Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 AL391704.1-202ENST00000453889 874 ntTSL 3 BASIC0.2□□□□□ -2.38
PRKDCP78527 SNORA31.6-201ENST00000516241 130 ntBASIC0.2□□□□□ -2.38
PRKDCP78527 LINC02235-201ENST00000534675 466 ntTSL 5 BASIC0.2□□□□□ -2.38
PRKDCP78527 AC004492.1-201ENST00000607036 742 ntBASIC0.2□□□□□ -2.38
PRKDCP78527 AC092953.2-201ENST00000608000 699 ntBASIC0.2□□□□□ -2.38
PRKDCP78527 AL359314.1-201ENST00000616913 261 ntBASIC0.2□□□□□ -2.38
PRKDCP78527 AC017037.3-201ENST00000625016 472 ntBASIC0.2□□□□□ -2.38
PRKDCP78527 RNU6-1243P-201ENST00000364028 107 ntBASIC0.2□□□□□ -2.38
PRKDCP78527 HMGB1P17-201ENST00000403495 628 ntBASIC0.2□□□□□ -2.38
PRKDCP78527 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC0.2□□□□□ -2.38
PRKDCP78527 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC0.2□□□□□ -2.38
PRKDCP78527 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC0.2□□□□□ -2.38
PRKDCP78527 OR8K4P-201ENST00000534608 872 ntBASIC0.2□□□□□ -2.38
PRKDCP78527 NIFKP6-201ENST00000598115 845 ntBASIC0.2□□□□□ -2.38
PRKDCP78527 AC010894.2-203ENST00000606406 499 ntTSL 3 BASIC0.2□□□□□ -2.38
PRKDCP78527 AC068057.2-201ENST00000624047 895 ntBASIC0.2□□□□□ -2.38
PRKDCP78527 RNU6-217P-201ENST00000384164 104 ntBASIC0.19□□□□□ -2.38
PRKDCP78527 MIR604-201ENST00000384880 94 ntBASIC0.19□□□□□ -2.38
PRKDCP78527 RNU6-360P-201ENST00000390944 104 ntBASIC0.19□□□□□ -2.38
PRKDCP78527 C1DP1-201ENST00000426049 402 ntBASIC0.19□□□□□ -2.38
PRKDCP78527 MYCBP2-AS2-201ENST00000428716 428 ntTSL 5 BASIC0.19□□□□□ -2.38
PRKDCP78527 LINC01724-201ENST00000430519 621 ntTSL 3 BASIC0.19□□□□□ -2.38
PRKDCP78527 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC0.19□□□□□ -2.38
PRKDCP78527 LINC01078-201ENST00000434832 387 ntTSL 5 BASIC0.19□□□□□ -2.38
PRKDCP78527 AC013476.1-201ENST00000446709 537 ntTSL 4 BASIC0.19□□□□□ -2.38
PRKDCP78527 SNORA14.1-201ENST00000516113 141 ntBASIC0.19□□□□□ -2.38
PRKDCP78527 SCARNA15.2-201ENST00000516409 127 ntBASIC0.19□□□□□ -2.38
PRKDCP78527 MIR4667-201ENST00000578933 66 ntBASIC0.19□□□□□ -2.38
PRKDCP78527 AP000403.1-201ENST00000603349 851 ntBASIC0.19□□□□□ -2.38
PRKDCP78527 AC013470.4-201ENST00000619978 986 ntBASIC0.19□□□□□ -2.38
PRKDCP78527 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC0.19□□□□□ -2.38
PRKDCP78527 ANKRD30BP1-201ENST00000451052 2186 ntBASIC0.19□□□□□ -2.38
PRKDCP78527 AL035410.1-201ENST00000427409 427 ntBASIC0.19□□□□□ -2.38
PRKDCP78527 AC093027.1-201ENST00000546698 429 ntBASIC0.19□□□□□ -2.38
PRKDCP78527 AC091132.5-204ENST00000586348 630 ntTSL 3 BASIC0.19□□□□□ -2.38
PRKDCP78527 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC0.19□□□□□ -2.38
PRKDCP78527 U4atac.1-201ENST00000618345 95 ntBASIC0.19□□□□□ -2.38
PRKDCP78527 SENP7-204ENST00000394085 1483 ntTSL 1 (best) BASIC0.19□□□□□ -2.38
PRKDCP78527 RNU6-414P-201ENST00000363705 104 ntBASIC0.19□□□□□ -2.38
PRKDCP78527 RNU6-26P-201ENST00000383985 107 ntBASIC0.19□□□□□ -2.38
PRKDCP78527 Y_RNA.453-201ENST00000384223 109 ntBASIC0.19□□□□□ -2.38
PRKDCP78527 MIR153-2-201ENST00000385225 87 ntBASIC0.19□□□□□ -2.38
PRKDCP78527 MIR1290-201ENST00000408735 78 ntBASIC0.19□□□□□ -2.38
PRKDCP78527 SPATA17-AS1-201ENST00000415765 420 ntTSL 5 BASIC0.19□□□□□ -2.38
PRKDCP78527 GNGT1-203ENST00000429473 538 ntAPPRIS P1 TSL 1 (best) BASIC0.19□□□□□ -2.38
PRKDCP78527 DYNLT3P2-201ENST00000442517 295 ntBASIC0.19□□□□□ -2.38
PRKDCP78527 AC018693.1-201ENST00000442829 550 ntTSL 4 BASIC0.19□□□□□ -2.38
PRKDCP78527 RNU6-775P-201ENST00000459318 96 ntBASIC0.19□□□□□ -2.38
PRKDCP78527 RNA5SP165-201ENST00000517142 115 ntBASIC0.19□□□□□ -2.38
PRKDCP78527 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC0.19□□□□□ -2.38
PRKDCP78527 C1DP5-201ENST00000525775 383 ntBASIC0.19□□□□□ -2.38
PRKDCP78527 DLEU1_2.1-201ENST00000617920 342 ntBASIC0.19□□□□□ -2.38
PRKDCP78527 U3.8-201ENST00000363675 217 ntBASIC0.19□□□□□ -2.38
PRKDCP78527 RNU6-30P-201ENST00000384561 107 ntBASIC0.19□□□□□ -2.38
PRKDCP78527 Y_RNA.552-201ENST00000384665 112 ntBASIC0.19□□□□□ -2.38
PRKDCP78527 MIR1303-201ENST00000408625 86 ntBASIC0.19□□□□□ -2.38
PRKDCP78527 AC009518.2-201ENST00000418056 731 ntBASIC0.19□□□□□ -2.38
PRKDCP78527 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC0.19□□□□□ -2.38
PRKDCP78527 LINC01802-201ENST00000438824 523 ntTSL 3 BASIC0.19□□□□□ -2.38
PRKDCP78527 AC027335.1-201ENST00000515377 543 ntTSL 4 BASIC0.19□□□□□ -2.38
PRKDCP78527 RNU6-91P-201ENST00000607774 107 ntBASIC0.19□□□□□ -2.38
PRKDCP78527 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC0.19□□□□□ -2.38
PRKDCP78527 TEX41-243ENST00000614173 190 ntTSL 5 BASIC0.19□□□□□ -2.38
PRKDCP78527 MIR8074-201ENST00000615081 81 ntBASIC0.19□□□□□ -2.38
PRKDCP78527 RNU6-1226P-201ENST00000384317 107 ntBASIC0.18□□□□□ -2.38
PRKDCP78527 snoU13.11-201ENST00000459219 104 ntBASIC0.18□□□□□ -2.38
PRKDCP78527 AP003973.1-201ENST00000604639 691 ntBASIC0.18□□□□□ -2.38
PRKDCP78527 AC083798.2-205ENST00000608015 575 ntTSL 5 BASIC0.18□□□□□ -2.38
PRKDCP78527 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC0.18□□□□□ -2.38
PRKDCP78527 RNU6-45P-201ENST00000384471 107 ntBASIC0.18□□□□□ -2.38
PRKDCP78527 RNU2-43P-201ENST00000410306 190 ntBASIC0.18□□□□□ -2.38
PRKDCP78527 MTND4LP10-201ENST00000435146 291 ntBASIC0.18□□□□□ -2.38
PRKDCP78527 UBE2V1P8-201ENST00000437166 265 ntBASIC0.18□□□□□ -2.38
PRKDCP78527 AC097499.1-201ENST00000444277 208 ntBASIC0.18□□□□□ -2.38
PRKDCP78527 MIR217HG-201ENST00000446139 900 ntTSL 5 BASIC0.18□□□□□ -2.38
PRKDCP78527 HMGN3P1-201ENST00000453847 193 ntBASIC0.18□□□□□ -2.38
PRKDCP78527 VPS26A-206ENST00000489794 928 ntTSL 3 BASIC0.18□□□□□ -2.38
PRKDCP78527 AP003122.4-201ENST00000530980 758 ntBASIC0.18□□□□□ -2.38
PRKDCP78527 AL590705.4-201ENST00000532209 134 ntBASIC0.18□□□□□ -2.38
PRKDCP78527 AC091814.1-201ENST00000545258 719 ntTSL 3 BASIC0.18□□□□□ -2.38
PRKDCP78527 AC016256.1-201ENST00000547971 354 ntBASIC0.18□□□□□ -2.38
PRKDCP78527 MIR4504-201ENST00000577413 92 ntBASIC0.18□□□□□ -2.38
PRKDCP78527 HMGN2P15-201ENST00000585707 270 ntBASIC0.18□□□□□ -2.38
PRKDCP78527 MIR198-201ENST00000637333 62 ntBASIC0.18□□□□□ -2.38
PRKDCP78527 ZNF639-206ENST00000484866 1730 ntAPPRIS P1 TSL 2 BASIC0.18□□□□□ -2.38
PRKDCP78527 MIR101-1-201ENST00000362265 75 ntBASIC0.18□□□□□ -2.38
PRKDCP78527 Y_RNA.255-201ENST00000364581 97 ntBASIC0.18□□□□□ -2.38
PRKDCP78527 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC0.18□□□□□ -2.38
PRKDCP78527 CYP2C59P-201ENST00000457790 269 ntBASIC0.18□□□□□ -2.38
PRKDCP78527 TOPORSLP1-202ENST00000469756 969 ntTSL 3 BASIC0.18□□□□□ -2.38
PRKDCP78527 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC0.18□□□□□ -2.38
PRKDCP78527 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC0.18□□□□□ -2.38
PRKDCP78527 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC0.18□□□□□ -2.38
PRKDCP78527 AC016925.2-201ENST00000605108 242 ntBASIC0.18□□□□□ -2.38
PRKDCP78527 AC018926.3-201ENST00000618841 406 ntBASIC0.18□□□□□ -2.38
PRKDCP78527 RNU6-338P-201ENST00000383888 105 ntBASIC0.17□□□□□ -2.38
PRKDCP78527 MT-TC-201ENST00000387405 66 ntBASIC0.17□□□□□ -2.38
PRKDCP78527 RNA5SP118-201ENST00000410385 109 ntBASIC0.17□□□□□ -2.38
PRKDCP78527 RPS29P8-201ENST00000445109 171 ntBASIC0.17□□□□□ -2.38
PRKDCP78527 Z82190.1-201ENST00000454534 490 ntBASIC0.17□□□□□ -2.38
Retrieved 100 of 98,524 protein–RNA pairs in 100.9 ms