Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 SCARNA17.2-201ENST00000516334 143 ntBASIC3.35□□□□□ -1.87
NEK3P51956 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC3.35□□□□□ -1.87
NEK3P51956 AC012493.2-201ENST00000595083 291 ntBASIC3.35□□□□□ -1.87
NEK3P51956 AL162713.1-201ENST00000604480 262 ntBASIC3.35□□□□□ -1.87
NEK3P51956 AC073657.2-201ENST00000605661 303 ntBASIC3.35□□□□□ -1.87
NEK3P51956 SCARNA17.4-201ENST00000614296 143 ntBASIC3.35□□□□□ -1.87
NEK3P51956 RDM1-219ENST00000615378 542 ntTSL 3 BASIC3.35□□□□□ -1.87
NEK3P51956 MIR7112-201ENST00000616126 65 ntBASIC3.35□□□□□ -1.87
NEK3P51956 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC3.35□□□□□ -1.87
NEK3P51956 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC3.35□□□□□ -1.87
NEK3P51956 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC3.35□□□□□ -1.87
NEK3P51956 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC3.35□□□□□ -1.87
NEK3P51956 MIR7157-201ENST00000635801 60 ntBASIC3.35□□□□□ -1.87
NEK3P51956 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC3.35□□□□□ -1.87
NEK3P51956 AC026241.1-201ENST00000517873 2142 ntBASIC3.34□□□□□ -1.87
NEK3P51956 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
NEK3P51956 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
NEK3P51956 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC3.34□□□□□ -1.87
NEK3P51956 Y_RNA.167-201ENST00000363735 109 ntBASIC3.34□□□□□ -1.87
NEK3P51956 Y_RNA.530-201ENST00000384587 101 ntBASIC3.34□□□□□ -1.87
NEK3P51956 PIGP-205ENST00000399103 656 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
NEK3P51956 RN7SKP220-201ENST00000410611 288 ntBASIC3.34□□□□□ -1.87
NEK3P51956 SNORD56-201ENST00000413522 71 ntBASIC3.34□□□□□ -1.87
NEK3P51956 AL513477.1-202ENST00000417061 214 ntBASIC3.34□□□□□ -1.87
NEK3P51956 AC009161.1-201ENST00000417306 376 ntBASIC3.34□□□□□ -1.87
NEK3P51956 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC3.34□□□□□ -1.87
NEK3P51956 AC026355.1-201ENST00000423466 587 ntTSL 5 BASIC3.34□□□□□ -1.87
NEK3P51956 AL353705.1-201ENST00000433468 480 ntBASIC3.34□□□□□ -1.87
NEK3P51956 AC004383.1-201ENST00000438135 289 ntBASIC3.34□□□□□ -1.87
NEK3P51956 AC006028.1-201ENST00000438379 402 ntBASIC3.34□□□□□ -1.87
NEK3P51956 AC009969.1-201ENST00000438726 172 ntBASIC3.34□□□□□ -1.87
NEK3P51956 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
NEK3P51956 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC3.34□□□□□ -1.87
NEK3P51956 RPL23AP45-201ENST00000476406 468 ntBASIC3.34□□□□□ -1.87
NEK3P51956 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC3.34□□□□□ -1.87
NEK3P51956 MTCYBP40-201ENST00000509390 1135 ntBASIC3.34□□□□□ -1.87
NEK3P51956 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC3.34□□□□□ -1.87
NEK3P51956 SNORA74D-201ENST00000516404 141 ntBASIC3.34□□□□□ -1.87
NEK3P51956 AC013799.1-201ENST00000531157 348 ntTSL 2 BASIC3.34□□□□□ -1.87
NEK3P51956 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC3.34□□□□□ -1.87
NEK3P51956 MIR5680-201ENST00000577577 84 ntBASIC3.34□□□□□ -1.87
NEK3P51956 VN1R107P-201ENST00000601784 209 ntBASIC3.34□□□□□ -1.87
NEK3P51956 AL137843.1-201ENST00000605078 385 ntBASIC3.34□□□□□ -1.87
NEK3P51956 ATP1B3P1-201ENST00000605365 821 ntBASIC3.34□□□□□ -1.87
NEK3P51956 AC004832.5-201ENST00000608677 401 ntBASIC3.34□□□□□ -1.87
NEK3P51956 AC090617.7-201ENST00000623952 126 ntBASIC3.34□□□□□ -1.87
NEK3P51956 MIR3662-201ENST00000637030 95 ntBASIC3.34□□□□□ -1.87
NEK3P51956 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC3.34□□□□□ -1.87
NEK3P51956 AL355596.1-201ENST00000565399 3996 ntBASIC3.34□□□□□ -1.87
NEK3P51956 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC3.33□□□□□ -1.88
NEK3P51956 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC3.33□□□□□ -1.88
NEK3P51956 GABRG2-221ENST00000639683 3600 ntTSL 5 BASIC3.33□□□□□ -1.88
NEK3P51956 RNU6-37P-201ENST00000362692 107 ntBASIC3.33□□□□□ -1.88
NEK3P51956 RNU6-11P-201ENST00000364234 107 ntBASIC3.33□□□□□ -1.88
NEK3P51956 RNU6-7-201ENST00000364784 107 ntBASIC3.33□□□□□ -1.88
NEK3P51956 RNU6-8-201ENST00000365467 107 ntBASIC3.33□□□□□ -1.88
NEK3P51956 RNU6-25P-201ENST00000383873 107 ntBASIC3.33□□□□□ -1.88
NEK3P51956 RNU6-1-201ENST00000383898 107 ntBASIC3.33□□□□□ -1.88
NEK3P51956 RNU6-48P-201ENST00000384161 107 ntBASIC3.33□□□□□ -1.88
NEK3P51956 RNU6-36P-201ENST00000384172 107 ntBASIC3.33□□□□□ -1.88
NEK3P51956 RNU6-4P-201ENST00000384205 107 ntBASIC3.33□□□□□ -1.88
NEK3P51956 RNU6-5P-201ENST00000384238 107 ntBASIC3.33□□□□□ -1.88
NEK3P51956 RNU6-3P-201ENST00000384314 107 ntBASIC3.33□□□□□ -1.88
NEK3P51956 RNU6-16P-201ENST00000384385 107 ntBASIC3.33□□□□□ -1.88
NEK3P51956 RNU6-15P-201ENST00000384534 107 ntBASIC3.33□□□□□ -1.88
NEK3P51956 RNU6-2-201ENST00000384627 107 ntBASIC3.33□□□□□ -1.88
NEK3P51956 RNU6-29P-201ENST00000384637 107 ntBASIC3.33□□□□□ -1.88
NEK3P51956 RNU6-9-201ENST00000384776 107 ntBASIC3.33□□□□□ -1.88
NEK3P51956 RNU6-33P-201ENST00000384793 107 ntBASIC3.33□□□□□ -1.88
NEK3P51956 RNU6ATAC10P-201ENST00000408635 111 ntBASIC3.33□□□□□ -1.88
NEK3P51956 RNA5SP390-201ENST00000410191 113 ntBASIC3.33□□□□□ -1.88
NEK3P51956 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC3.33□□□□□ -1.88
NEK3P51956 USP9YP20-201ENST00000419224 558 ntBASIC3.33□□□□□ -1.88
NEK3P51956 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC3.33□□□□□ -1.88
NEK3P51956 AL109947.1-201ENST00000423747 382 ntTSL 2 BASIC3.33□□□□□ -1.88
NEK3P51956 TTTY8-202ENST00000426035 518 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
NEK3P51956 AC013470.1-201ENST00000453438 462 ntBASIC3.33□□□□□ -1.88
NEK3P51956 TTTY8B-202ENST00000455570 518 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
NEK3P51956 AC133134.1-201ENST00000466800 359 ntBASIC3.33□□□□□ -1.88
NEK3P51956 AC018437.1-201ENST00000492214 406 ntBASIC3.33□□□□□ -1.88
NEK3P51956 RNU6-1038P-201ENST00000516516 104 ntBASIC3.33□□□□□ -1.88
NEK3P51956 RN7SKP282-201ENST00000516824 299 ntBASIC3.33□□□□□ -1.88
NEK3P51956 RN7SKP57-201ENST00000517248 293 ntBASIC3.33□□□□□ -1.88
NEK3P51956 AC245166.1-201ENST00000521012 253 ntBASIC3.33□□□□□ -1.88
NEK3P51956 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC3.33□□□□□ -1.88
NEK3P51956 AC010186.2-204ENST00000537668 439 ntBASIC3.33□□□□□ -1.88
NEK3P51956 POC1B-211ENST00000549504 581 ntTSL 5 BASIC3.33□□□□□ -1.88
NEK3P51956 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC3.33□□□□□ -1.88
NEK3P51956 OR1M4P-201ENST00000589199 287 ntBASIC3.33□□□□□ -1.88
NEK3P51956 AP000907.4-201ENST00000604143 237 ntBASIC3.33□□□□□ -1.88
NEK3P51956 RNU6-6P-201ENST00000606623 107 ntBASIC3.33□□□□□ -1.88
NEK3P51956 AC091953.5-201ENST00000622919 233 ntBASIC3.33□□□□□ -1.88
NEK3P51956 MIR7515-201ENST00000637837 67 ntBASIC3.33□□□□□ -1.88
NEK3P51956 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
NEK3P51956 U3.6-201ENST00000363622 211 ntBASIC3.32□□□□□ -1.88
NEK3P51956 SNORD116-20-201ENST00000384529 92 ntBASIC3.32□□□□□ -1.88
NEK3P51956 RNU6-1106P-201ENST00000390845 107 ntBASIC3.32□□□□□ -1.88
NEK3P51956 AL357075.1-201ENST00000404107 726 ntBASIC3.32□□□□□ -1.88
NEK3P51956 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC3.32□□□□□ -1.88
NEK3P51956 NDUFA5P4-201ENST00000436704 385 ntBASIC3.32□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 118.6 ms