Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 AC020661.2-201ENST00000560114 134 ntBASIC3.03□□□□□ -1.92
SOX2P48431 TTN-AS1-212ENST00000582847 1036 ntTSL 5 BASIC3.03□□□□□ -1.92
SOX2P48431 BNIP3P22-201ENST00000593399 556 ntBASIC3.03□□□□□ -1.92
SOX2P48431 AL136164.4-201ENST00000625013 2135 ntBASIC3.03□□□□□ -1.92
SOX2P48431 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC3.03□□□□□ -1.92
SOX2P48431 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
SOX2P48431 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC3.03□□□□□ -1.92
SOX2P48431 EFTUD1P2-201ENST00000514817 1603 ntBASIC3.03□□□□□ -1.92
SOX2P48431 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC3.03□□□□□ -1.92
SOX2P48431 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
SOX2P48431 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC3.03□□□□□ -1.92
SOX2P48431 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.03□□□□□ -1.93
SOX2P48431 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC3.03□□□□□ -1.93
SOX2P48431 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC3.02□□□□□ -1.93
SOX2P48431 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
SOX2P48431 PAPOLA-202ENST00000392990 2588 ntTSL 5 BASIC3.02□□□□□ -1.93
SOX2P48431 Y_RNA.2-201ENST00000362330 96 ntBASIC3.02□□□□□ -1.93
SOX2P48431 Y_RNA.326-201ENST00000365176 113 ntBASIC3.02□□□□□ -1.93
SOX2P48431 RNU6-898P-201ENST00000365627 104 ntBASIC3.02□□□□□ -1.93
SOX2P48431 Y_RNA.404-201ENST00000383978 102 ntBASIC3.02□□□□□ -1.93
SOX2P48431 Y_RNA.445-201ENST00000384168 102 ntBASIC3.02□□□□□ -1.93
SOX2P48431 MIR559-201ENST00000385188 96 ntBASIC3.02□□□□□ -1.93
SOX2P48431 EIF4EBP2P3-201ENST00000403144 334 ntBASIC3.02□□□□□ -1.93
SOX2P48431 AC126124.2-201ENST00000413542 321 ntBASIC3.02□□□□□ -1.93
SOX2P48431 AC093578.1-201ENST00000415219 368 ntBASIC3.02□□□□□ -1.93
SOX2P48431 AC017079.2-201ENST00000416102 485 ntBASIC3.02□□□□□ -1.93
SOX2P48431 AL117339.3-201ENST00000418733 162 ntBASIC3.02□□□□□ -1.93
SOX2P48431 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC3.02□□□□□ -1.93
SOX2P48431 USMG5P1-201ENST00000425964 177 ntBASIC3.02□□□□□ -1.93
SOX2P48431 AP000907.1-201ENST00000428428 510 ntBASIC3.02□□□□□ -1.93
SOX2P48431 C21orf91-OT1-202ENST00000430815 717 ntTSL 5 BASIC3.02□□□□□ -1.93
SOX2P48431 AL162384.1-201ENST00000437881 499 ntTSL 2 BASIC3.02□□□□□ -1.93
SOX2P48431 RPS29P7-201ENST00000439662 171 ntBASIC3.02□□□□□ -1.93
SOX2P48431 TPT1P12-201ENST00000448968 492 ntBASIC3.02□□□□□ -1.93
SOX2P48431 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC3.02□□□□□ -1.93
SOX2P48431 AC006026.2-201ENST00000457376 180 ntBASIC3.02□□□□□ -1.93
SOX2P48431 Y_RNA.631-201ENST00000459607 101 ntBASIC3.02□□□□□ -1.93
SOX2P48431 AC008571.1-201ENST00000467232 300 ntBASIC3.02□□□□□ -1.93
SOX2P48431 RPS27AP10-201ENST00000496103 208 ntBASIC3.02□□□□□ -1.93
SOX2P48431 AK3P2-201ENST00000507976 429 ntBASIC3.02□□□□□ -1.93
SOX2P48431 AC010265.1-201ENST00000513509 211 ntBASIC3.02□□□□□ -1.93
SOX2P48431 AC026402.1-201ENST00000513642 170 ntBASIC3.02□□□□□ -1.93
SOX2P48431 RNU6-377P-201ENST00000515965 102 ntBASIC3.02□□□□□ -1.93
SOX2P48431 RNU6-307P-201ENST00000516743 106 ntBASIC3.02□□□□□ -1.93
SOX2P48431 AP004607.1-201ENST00000524456 203 ntBASIC3.02□□□□□ -1.93
SOX2P48431 MIR4697-201ENST00000582977 78 ntBASIC3.02□□□□□ -1.93
SOX2P48431 AC011494.1-201ENST00000596454 237 ntBASIC3.02□□□□□ -1.93
SOX2P48431 AC009314.1-201ENST00000603871 304 ntBASIC3.02□□□□□ -1.93
SOX2P48431 MTND4LP5-201ENST00000605152 292 ntBASIC3.02□□□□□ -1.93
SOX2P48431 AC004852.3-201ENST00000614131 326 ntBASIC3.02□□□□□ -1.93
SOX2P48431 ZYXP1-201ENST00000617638 118 ntBASIC3.02□□□□□ -1.93
SOX2P48431 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC3.02□□□□□ -1.93
SOX2P48431 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC3.02□□□□□ -1.93
SOX2P48431 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
SOX2P48431 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
SOX2P48431 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
SOX2P48431 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC3.02□□□□□ -1.93
SOX2P48431 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
SOX2P48431 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC3.01□□□□□ -1.93
SOX2P48431 RPL9P7-201ENST00000330965 580 ntBASIC3.01□□□□□ -1.93
SOX2P48431 SNORD9-201ENST00000362566 104 ntBASIC3.01□□□□□ -1.93
SOX2P48431 RNU6-1059P-201ENST00000363752 98 ntBASIC3.01□□□□□ -1.93
SOX2P48431 Y_RNA.395-201ENST00000383945 109 ntBASIC3.01□□□□□ -1.93
SOX2P48431 RNU6-890P-201ENST00000384121 107 ntBASIC3.01□□□□□ -1.93
SOX2P48431 RNU6-474P-201ENST00000384243 107 ntBASIC3.01□□□□□ -1.93
SOX2P48431 SNORA75.6-201ENST00000391318 127 ntBASIC3.01□□□□□ -1.93
SOX2P48431 AL513475.1-201ENST00000406602 315 ntBASIC3.01□□□□□ -1.93
SOX2P48431 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
SOX2P48431 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC3.01□□□□□ -1.93
SOX2P48431 RSL24D1P6-201ENST00000426934 401 ntBASIC3.01□□□□□ -1.93
SOX2P48431 AL133396.1-201ENST00000432048 687 ntBASIC3.01□□□□□ -1.93
SOX2P48431 AL513043.1-201ENST00000439124 535 ntBASIC3.01□□□□□ -1.93
SOX2P48431 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC3.01□□□□□ -1.93
SOX2P48431 AC098831.1-201ENST00000440661 216 ntBASIC3.01□□□□□ -1.93
SOX2P48431 FTH1P25-201ENST00000447665 469 ntBASIC3.01□□□□□ -1.93
SOX2P48431 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC3.01□□□□□ -1.93
SOX2P48431 snoU13.28-201ENST00000459235 104 ntBASIC3.01□□□□□ -1.93
SOX2P48431 U8.21-201ENST00000459536 136 ntBASIC3.01□□□□□ -1.93
SOX2P48431 FTH1P2-201ENST00000466086 412 ntBASIC3.01□□□□□ -1.93
SOX2P48431 RPL9P9-202ENST00000466501 579 ntBASIC3.01□□□□□ -1.93
SOX2P48431 LINC00491-204ENST00000513815 582 ntTSL 4 BASIC3.01□□□□□ -1.93
SOX2P48431 ACA59.1-201ENST00000515966 143 ntBASIC3.01□□□□□ -1.93
SOX2P48431 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC3.01□□□□□ -1.93
SOX2P48431 AC103996.1-201ENST00000555468 102 ntBASIC3.01□□□□□ -1.93
SOX2P48431 AL391261.3-201ENST00000557194 520 ntBASIC3.01□□□□□ -1.93
SOX2P48431 RN7SL703P-201ENST00000578485 302 ntBASIC3.01□□□□□ -1.93
SOX2P48431 MIR4286-201ENST00000580651 93 ntBASIC3.01□□□□□ -1.93
SOX2P48431 MIR3171-201ENST00000584270 74 ntBASIC3.01□□□□□ -1.93
SOX2P48431 AC005899.2-201ENST00000584353 90 ntBASIC3.01□□□□□ -1.93
SOX2P48431 AC018889.1-201ENST00000605372 397 ntBASIC3.01□□□□□ -1.93
SOX2P48431 STARD13-AS-221ENST00000608197 604 ntTSL 5 BASIC3.01□□□□□ -1.93
SOX2P48431 AC068831.7-201ENST00000616954 363 ntBASIC3.01□□□□□ -1.93
SOX2P48431 AC092608.2-201ENST00000624427 218 ntBASIC3.01□□□□□ -1.93
SOX2P48431 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC3.01□□□□□ -1.93
SOX2P48431 AC058791.1-201ENST00000608412 3198 ntBASIC3.01□□□□□ -1.93
SOX2P48431 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC3.01□□□□□ -1.93
SOX2P48431 AC032011.1-201ENST00000611703 1549 ntBASIC3□□□□□ -1.93
SOX2P48431 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC3□□□□□ -1.93
SOX2P48431 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC3□□□□□ -1.93
SOX2P48431 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC3□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 100.2 ms