Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 AC064871.1-202ENST00000413954 382 ntTSL 5 BASIC1.89□□□□□ -2.11
RFX3P48380 AC011233.1-201ENST00000422812 283 ntBASIC1.89□□□□□ -2.11
RFX3P48380 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC1.89□□□□□ -2.11
RFX3P48380 RPL23AP30-201ENST00000432419 501 ntBASIC1.89□□□□□ -2.11
RFX3P48380 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC1.89□□□□□ -2.11
RFX3P48380 AL161788.1-201ENST00000441805 169 ntBASIC1.89□□□□□ -2.11
RFX3P48380 USP9YP8-201ENST00000441913 500 ntBASIC1.89□□□□□ -2.11
RFX3P48380 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC1.89□□□□□ -2.11
RFX3P48380 USP9YP12-201ENST00000450481 570 ntBASIC1.89□□□□□ -2.11
RFX3P48380 SNRPFP4-201ENST00000456366 242 ntBASIC1.89□□□□□ -2.11
RFX3P48380 PLSCR5-AS1-201ENST00000473817 450 ntTSL 3 BASIC1.89□□□□□ -2.11
RFX3P48380 AC107032.1-201ENST00000485945 480 ntBASIC1.89□□□□□ -2.11
RFX3P48380 AC022493.1-201ENST00000492984 337 ntBASIC1.89□□□□□ -2.11
RFX3P48380 CKS1BP2-201ENST00000497342 240 ntBASIC1.89□□□□□ -2.11
RFX3P48380 AC010587.1-201ENST00000505809 469 ntBASIC1.89□□□□□ -2.11
RFX3P48380 SNORA4.4-201ENST00000515921 135 ntBASIC1.89□□□□□ -2.11
RFX3P48380 RNU5B-3P-201ENST00000516601 115 ntBASIC1.89□□□□□ -2.11
RFX3P48380 AC025524.2-207ENST00000520097 506 ntTSL 3 BASIC1.89□□□□□ -2.11
RFX3P48380 AC107953.1-201ENST00000522216 297 ntBASIC1.89□□□□□ -2.11
RFX3P48380 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC1.89□□□□□ -2.11
RFX3P48380 AHI1-212ENST00000528103 441 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
RFX3P48380 CCDC7-208ENST00000537047 657 ntAPPRIS ALT2 TSL 1 (best) BASIC1.89□□□□□ -2.11
RFX3P48380 CCDC7-209ENST00000539197 581 ntAPPRIS ALT2 TSL 1 (best) BASIC1.89□□□□□ -2.11
RFX3P48380 AC136188.1-201ENST00000546770 342 ntTSL 3 BASIC1.89□□□□□ -2.11
RFX3P48380 AC123905.1-201ENST00000552098 541 ntTSL 4 BASIC1.89□□□□□ -2.11
RFX3P48380 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC1.89□□□□□ -2.11
RFX3P48380 AL035425.2-201ENST00000563887 563 ntAPPRIS P1 TSL 4 BASIC1.89□□□□□ -2.11
RFX3P48380 MIR4448-201ENST00000584360 86 ntBASIC1.89□□□□□ -2.11
RFX3P48380 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC1.89□□□□□ -2.11
RFX3P48380 AL158827.2-201ENST00000602494 330 ntBASIC1.89□□□□□ -2.11
RFX3P48380 AL022154.1-201ENST00000604698 785 ntBASIC1.89□□□□□ -2.11
RFX3P48380 NDUFA8P1-201ENST00000605525 367 ntBASIC1.89□□□□□ -2.11
RFX3P48380 MIR15A-201ENST00000607334 83 ntBASIC1.89□□□□□ -2.11
RFX3P48380 C3orf49-203ENST00000616659 876 ntAPPRIS ALT2 TSL 5 BASIC1.89□□□□□ -2.11
RFX3P48380 USP12-203ENST00000620323 349 ntTSL 3 BASIC1.89□□□□□ -2.11
RFX3P48380 DUXAP9-208ENST00000622815 614 ntBASIC1.89□□□□□ -2.11
RFX3P48380 AC017037.3-201ENST00000625016 472 ntBASIC1.89□□□□□ -2.11
RFX3P48380 AC012593.1-211ENST00000625996 799 ntTSL 5 BASIC1.89□□□□□ -2.11
RFX3P48380 AL691447.3-201ENST00000635020 330 ntBASIC1.89□□□□□ -2.11
RFX3P48380 ATM-228ENST00000639240 498 ntTSL 5 BASIC1.89□□□□□ -2.11
RFX3P48380 ATM-230ENST00000640388 578 ntTSL 5 BASIC1.89□□□□□ -2.11
RFX3P48380 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC1.89□□□□□ -2.11
RFX3P48380 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC1.89□□□□□ -2.11
RFX3P48380 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC1.88□□□□□ -2.11
RFX3P48380 KLRF1-202ENST00000354855 838 ntTSL 1 (best) BASIC1.88□□□□□ -2.11
RFX3P48380 AL591034.2-201ENST00000402839 359 ntBASIC1.88□□□□□ -2.11
RFX3P48380 MTCYBP36-201ENST00000404146 440 ntBASIC1.88□□□□□ -2.11
RFX3P48380 RNU2-40P-201ENST00000410833 196 ntBASIC1.88□□□□□ -2.11
RFX3P48380 AL139156.1-201ENST00000412785 841 ntBASIC1.88□□□□□ -2.11
RFX3P48380 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC1.88□□□□□ -2.11
RFX3P48380 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC1.88□□□□□ -2.11
RFX3P48380 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC1.88□□□□□ -2.11
RFX3P48380 FABP5P13-201ENST00000452144 328 ntBASIC1.88□□□□□ -2.11
RFX3P48380 AL358075.2-201ENST00000452785 339 ntTSL 2 BASIC1.88□□□□□ -2.11
RFX3P48380 ZNF114P1-201ENST00000453500 292 ntBASIC1.88□□□□□ -2.11
RFX3P48380 CYP2C59P-201ENST00000457790 269 ntBASIC1.88□□□□□ -2.11
RFX3P48380 AC117503.1-201ENST00000472241 394 ntBASIC1.88□□□□□ -2.11
RFX3P48380 AC092436.1-201ENST00000506450 503 ntBASIC1.88□□□□□ -2.11
RFX3P48380 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC1.88□□□□□ -2.11
RFX3P48380 APELA-204ENST00000515275 551 ntAPPRIS P1 TSL 3 BASIC1.88□□□□□ -2.11
RFX3P48380 Y_RNA.689-201ENST00000516589 107 ntBASIC1.88□□□□□ -2.11
RFX3P48380 OR5AQ1P-201ENST00000527596 927 ntBASIC1.88□□□□□ -2.11
RFX3P48380 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC1.88□□□□□ -2.11
RFX3P48380 AC135279.1-201ENST00000543493 504 ntBASIC1.88□□□□□ -2.11
RFX3P48380 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC1.88□□□□□ -2.11
RFX3P48380 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC1.88□□□□□ -2.11
RFX3P48380 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC1.88□□□□□ -2.11
RFX3P48380 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC1.88□□□□□ -2.11
RFX3P48380 AC007229.1-201ENST00000590455 412 ntBASIC1.88□□□□□ -2.11
RFX3P48380 SNRPGP19-201ENST00000603826 189 ntBASIC1.88□□□□□ -2.11
RFX3P48380 AC112191.3-201ENST00000604371 277 ntBASIC1.88□□□□□ -2.11
RFX3P48380 AC018638.7-201ENST00000605836 1114 ntBASIC1.88□□□□□ -2.11
RFX3P48380 AC087045.1-201ENST00000605856 382 ntBASIC1.88□□□□□ -2.11
RFX3P48380 AC079248.2-201ENST00000623779 326 ntBASIC1.88□□□□□ -2.11
RFX3P48380 AC110994.2-201ENST00000635481 492 ntBASIC1.88□□□□□ -2.11
RFX3P48380 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC1.88□□□□□ -2.11
RFX3P48380 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC1.88□□□□□ -2.11
RFX3P48380 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC1.87□□□□□ -2.11
RFX3P48380 AC138393.1-203ENST00000327086 343 ntBASIC1.87□□□□□ -2.11
RFX3P48380 SNORA75B-201ENST00000384053 137 ntBASIC1.87□□□□□ -2.11
RFX3P48380 RNU6-1032P-201ENST00000384100 107 ntBASIC1.87□□□□□ -2.11
RFX3P48380 HMGN2P39-201ENST00000398005 273 ntBASIC1.87□□□□□ -2.11
RFX3P48380 SUMO2P12-201ENST00000405924 140 ntBASIC1.87□□□□□ -2.11
RFX3P48380 Y_RNA.598-201ENST00000410480 95 ntBASIC1.87□□□□□ -2.11
RFX3P48380 TEX41-202ENST00000414256 604 ntTSL 5 BASIC1.87□□□□□ -2.11
RFX3P48380 LINC01717-201ENST00000415754 527 ntTSL 5 BASIC1.87□□□□□ -2.11
RFX3P48380 AL356583.2-201ENST00000426536 280 ntBASIC1.87□□□□□ -2.11
RFX3P48380 AL162734.1-201ENST00000432858 157 ntTSL 5 BASIC1.87□□□□□ -2.11
RFX3P48380 AL359771.1-201ENST00000441809 379 ntTSL 5 BASIC1.87□□□□□ -2.11
RFX3P48380 FDX1P2-201ENST00000450769 375 ntBASIC1.87□□□□□ -2.11
RFX3P48380 AC010976.1-211ENST00000454503 644 ntTSL 2 BASIC1.87□□□□□ -2.11
RFX3P48380 AC018868.1-201ENST00000491307 315 ntBASIC1.87□□□□□ -2.11
RFX3P48380 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC1.87□□□□□ -2.11
RFX3P48380 AC092436.2-201ENST00000515188 411 ntTSL 2 BASIC1.87□□□□□ -2.11
RFX3P48380 RNU6-237P-201ENST00000515985 71 ntBASIC1.87□□□□□ -2.11
RFX3P48380 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC1.87□□□□□ -2.11
RFX3P48380 FAM92A1P1-201ENST00000528023 890 ntBASIC1.87□□□□□ -2.11
RFX3P48380 AP003181.2-201ENST00000528941 181 ntBASIC1.87□□□□□ -2.11
RFX3P48380 AC107882.1-201ENST00000530837 477 ntTSL 3 BASIC1.87□□□□□ -2.11
RFX3P48380 ZNF321P-202ENST00000550843 495 ntBASIC1.87□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 109.4 ms