Protein–RNA interactions for Protein: P34896

SHMT1, Serine hydroxymethyltransferase, cytosolic, humanhuman

Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1P34896 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC3.04□□□□□ -1.92
SHMT1P34896 AC108206.1-201ENST00000570186 4159 ntBASIC3.04□□□□□ -1.92
SHMT1P34896 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
SHMT1P34896 RNU6-884P-201ENST00000363889 107 ntBASIC3.04□□□□□ -1.92
SHMT1P34896 RNU6-715P-201ENST00000365204 103 ntBASIC3.04□□□□□ -1.92
SHMT1P34896 U8.9-201ENST00000365667 134 ntBASIC3.04□□□□□ -1.92
SHMT1P34896 RNU6-434P-201ENST00000384376 107 ntBASIC3.04□□□□□ -1.92
SHMT1P34896 RNU6-393P-201ENST00000384475 107 ntBASIC3.04□□□□□ -1.92
SHMT1P34896 RNU6-1127P-201ENST00000384580 107 ntBASIC3.04□□□□□ -1.92
SHMT1P34896 MIR518C-201ENST00000384822 101 ntBASIC3.04□□□□□ -1.92
SHMT1P34896 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC3.04□□□□□ -1.92
SHMT1P34896 AL590004.2-201ENST00000404787 371 ntBASIC3.04□□□□□ -1.92
SHMT1P34896 RNA5SP118-201ENST00000410385 109 ntBASIC3.04□□□□□ -1.92
SHMT1P34896 RNA5SP344-201ENST00000411081 104 ntBASIC3.04□□□□□ -1.92
SHMT1P34896 RNU6-373P-201ENST00000411247 98 ntBASIC3.04□□□□□ -1.92
SHMT1P34896 OR9R1P-201ENST00000412200 877 ntBASIC3.04□□□□□ -1.92
SHMT1P34896 RPL21P90-201ENST00000415692 466 ntBASIC3.04□□□□□ -1.92
SHMT1P34896 RPL7P10-201ENST00000417407 739 ntBASIC3.04□□□□□ -1.92
SHMT1P34896 ARL5AP1-201ENST00000418991 388 ntBASIC3.04□□□□□ -1.92
SHMT1P34896 AC104332.2-201ENST00000429959 156 ntBASIC3.04□□□□□ -1.92
SHMT1P34896 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC3.04□□□□□ -1.92
SHMT1P34896 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC3.04□□□□□ -1.92
SHMT1P34896 EEF1B2P7-201ENST00000451177 676 ntBASIC3.04□□□□□ -1.92
SHMT1P34896 MTND3P16-201ENST00000452205 344 ntBASIC3.04□□□□□ -1.92
SHMT1P34896 AL024497.2-201ENST00000457081 317 ntTSL 3 BASIC3.04□□□□□ -1.92
SHMT1P34896 AC092798.1-201ENST00000458542 409 ntBASIC3.04□□□□□ -1.92
SHMT1P34896 snoU13.28-201ENST00000459235 104 ntBASIC3.04□□□□□ -1.92
SHMT1P34896 RPL31P58-201ENST00000469001 379 ntBASIC3.04□□□□□ -1.92
SHMT1P34896 AC103975.1-201ENST00000482506 483 ntBASIC3.04□□□□□ -1.92
SHMT1P34896 AC139453.3-201ENST00000493276 369 ntBASIC3.04□□□□□ -1.92
SHMT1P34896 LINC01333-201ENST00000508083 724 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
SHMT1P34896 NAF1-205ENST00000509434 385 ntTSL 3 BASIC3.04□□□□□ -1.92
SHMT1P34896 IL7-206ENST00000520269 456 ntTSL 3 BASIC3.04□□□□□ -1.92
SHMT1P34896 RPL7P20-201ENST00000520308 745 ntBASIC3.04□□□□□ -1.92
SHMT1P34896 AP000867.2-201ENST00000532468 320 ntBASIC3.04□□□□□ -1.92
SHMT1P34896 AC091544.4-201ENST00000555268 342 ntBASIC3.04□□□□□ -1.92
SHMT1P34896 PCLAF-207ENST00000559519 749 ntTSL 2 BASIC3.04□□□□□ -1.92
SHMT1P34896 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
SHMT1P34896 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC3.04□□□□□ -1.92
SHMT1P34896 AP003122.6-201ENST00000623831 495 ntBASIC3.04□□□□□ -1.92
SHMT1P34896 MIR3662-201ENST00000637030 95 ntBASIC3.04□□□□□ -1.92
SHMT1P34896 AC024614.3-201ENST00000637860 256 ntBASIC3.04□□□□□ -1.92
SHMT1P34896 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC3.04□□□□□ -1.92
SHMT1P34896 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC3.04□□□□□ -1.92
SHMT1P34896 OR4G1P-203ENST00000641984 1631 ntBASIC3.04□□□□□ -1.92
SHMT1P34896 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
SHMT1P34896 RNU4-66P-201ENST00000365199 138 ntBASIC3.03□□□□□ -1.92
SHMT1P34896 RNU6-38P-201ENST00000384085 107 ntBASIC3.03□□□□□ -1.92
SHMT1P34896 RNU6-45P-201ENST00000384471 107 ntBASIC3.03□□□□□ -1.92
SHMT1P34896 SNORD70.1-201ENST00000391007 85 ntBASIC3.03□□□□□ -1.92
SHMT1P34896 PIGP-205ENST00000399103 656 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
SHMT1P34896 AL592114.1-201ENST00000403842 483 ntBASIC3.03□□□□□ -1.92
SHMT1P34896 HNRNPDLP1-201ENST00000412834 550 ntBASIC3.03□□□□□ -1.92
SHMT1P34896 RPL26P27-201ENST00000414397 437 ntBASIC3.03□□□□□ -1.92
SHMT1P34896 USP9YP20-201ENST00000419224 558 ntBASIC3.03□□□□□ -1.92
SHMT1P34896 AL137789.1-201ENST00000439443 682 ntTSL 3 BASIC3.03□□□□□ -1.92
SHMT1P34896 NFU1P2-201ENST00000448700 469 ntBASIC3.03□□□□□ -1.92
SHMT1P34896 MTATP6P7-201ENST00000453315 681 ntBASIC3.03□□□□□ -1.92
SHMT1P34896 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC3.03□□□□□ -1.92
SHMT1P34896 AL590639.1-201ENST00000456484 337 ntBASIC3.03□□□□□ -1.92
SHMT1P34896 RNU6-333P-201ENST00000459117 107 ntBASIC3.03□□□□□ -1.92
SHMT1P34896 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC3.03□□□□□ -1.92
SHMT1P34896 RPS29P25-201ENST00000481709 171 ntBASIC3.03□□□□□ -1.92
SHMT1P34896 MTCO3P9-201ENST00000506989 781 ntBASIC3.03□□□□□ -1.92
SHMT1P34896 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC3.03□□□□□ -1.92
SHMT1P34896 AC008716.1-201ENST00000511084 513 ntBASIC3.03□□□□□ -1.92
SHMT1P34896 RNU6-703P-201ENST00000516946 107 ntBASIC3.03□□□□□ -1.92
SHMT1P34896 AC009902.1-201ENST00000519351 183 ntBASIC3.03□□□□□ -1.92
SHMT1P34896 AC025755.1-201ENST00000521306 278 ntBASIC3.03□□□□□ -1.92
SHMT1P34896 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC3.03□□□□□ -1.92
SHMT1P34896 AC025030.2-201ENST00000552558 567 ntTSL 2 BASIC3.03□□□□□ -1.92
SHMT1P34896 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC3.03□□□□□ -1.92
SHMT1P34896 AC010525.2-201ENST00000590920 195 ntBASIC3.03□□□□□ -1.92
SHMT1P34896 AC090617.7-201ENST00000623952 126 ntBASIC3.03□□□□□ -1.92
SHMT1P34896 U2.21-201ENST00000637295 81 ntBASIC3.03□□□□□ -1.92
SHMT1P34896 AC233263.6-201ENST00000631132 1963 ntBASIC3.03□□□□□ -1.92
SHMT1P34896 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
SHMT1P34896 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC3.02□□□□□ -1.93
SHMT1P34896 AC004520.1-201ENST00000608362 1413 ntBASIC3.02□□□□□ -1.93
SHMT1P34896 MIR412-201ENST00000362142 91 ntBASIC3.02□□□□□ -1.93
SHMT1P34896 RNU1-73P-201ENST00000383971 164 ntBASIC3.02□□□□□ -1.93
SHMT1P34896 MIR578-201ENST00000384828 96 ntBASIC3.02□□□□□ -1.93
SHMT1P34896 MIR27B-201ENST00000385129 97 ntBASIC3.02□□□□□ -1.93
SHMT1P34896 CD3D-202ENST00000392884 476 ntTSL 2 BASIC3.02□□□□□ -1.93
SHMT1P34896 NDUFS5P4-201ENST00000412983 318 ntBASIC3.02□□□□□ -1.93
SHMT1P34896 AL109924.3-201ENST00000413324 393 ntTSL 2 BASIC3.02□□□□□ -1.93
SHMT1P34896 AL669831.1-202ENST00000428504 417 ntBASIC3.02□□□□□ -1.93
SHMT1P34896 GTF2IP13-201ENST00000438487 386 ntBASIC3.02□□□□□ -1.93
SHMT1P34896 RBMX2P4-201ENST00000441256 376 ntBASIC3.02□□□□□ -1.93
SHMT1P34896 RPS15AP27-201ENST00000449183 343 ntBASIC3.02□□□□□ -1.93
SHMT1P34896 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC3.02□□□□□ -1.93
SHMT1P34896 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC3.02□□□□□ -1.93
SHMT1P34896 RPL21P99-201ENST00000480369 423 ntBASIC3.02□□□□□ -1.93
SHMT1P34896 HMGB1P30-201ENST00000492455 606 ntBASIC3.02□□□□□ -1.93
SHMT1P34896 AC022493.1-201ENST00000492984 337 ntBASIC3.02□□□□□ -1.93
SHMT1P34896 AC026801.1-201ENST00000497178 464 ntBASIC3.02□□□□□ -1.93
SHMT1P34896 AC009901.1-201ENST00000506703 541 ntBASIC3.02□□□□□ -1.93
SHMT1P34896 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC3.02□□□□□ -1.93
SHMT1P34896 BNIP3P6-201ENST00000549284 499 ntBASIC3.02□□□□□ -1.93
SHMT1P34896 NACAP3-201ENST00000552100 481 ntBASIC3.02□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 113.3 ms