Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 AC004875.1-201ENST00000432702 378 ntTSL 3 BASIC5.2□□□□□ -1.58
COL9A1P20849 RPL39P40-201ENST00000445481 146 ntBASIC5.2□□□□□ -1.58
COL9A1P20849 AL138767.2-201ENST00000446794 168 ntTSL 3 BASIC5.2□□□□□ -1.58
COL9A1P20849 AC000111.2-201ENST00000448200 210 ntBASIC5.2□□□□□ -1.58
COL9A1P20849 AL592431.1-201ENST00000451090 317 ntTSL 3 BASIC5.2□□□□□ -1.58
COL9A1P20849 ENPP7P9-201ENST00000514456 627 ntBASIC5.2□□□□□ -1.58
COL9A1P20849 SNORA31.8-201ENST00000516327 108 ntBASIC5.2□□□□□ -1.58
COL9A1P20849 Y_RNA.690-201ENST00000516603 95 ntBASIC5.2□□□□□ -1.58
COL9A1P20849 AL160236.1-201ENST00000556317 195 ntBASIC5.2□□□□□ -1.58
COL9A1P20849 MIR3923-201ENST00000579521 83 ntBASIC5.2□□□□□ -1.58
COL9A1P20849 AC007179.3-201ENST00000604976 235 ntBASIC5.2□□□□□ -1.58
COL9A1P20849 MIR548AY-201ENST00000617669 107 ntBASIC5.2□□□□□ -1.58
COL9A1P20849 BX005214.3-202ENST00000619809 325 ntBASIC5.2□□□□□ -1.58
COL9A1P20849 U6.115-201ENST00000636045 103 ntBASIC5.2□□□□□ -1.58
COL9A1P20849 SNORD98-201ENST00000636377 67 ntBASIC5.2□□□□□ -1.58
COL9A1P20849 MSTN-201ENST00000260950 2822 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
COL9A1P20849 AC104793.1-201ENST00000508189 2840 ntTSL 2 BASIC5.2□□□□□ -1.58
COL9A1P20849 MIR99AHG-219ENST00000619222 3476 ntTSL 2 BASIC5.2□□□□□ -1.58
COL9A1P20849 ARHGEF12-213ENST00000532993 8753 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
COL9A1P20849 LRRC53-201ENST00000294635 3859 ntAPPRIS P1 TSL 5 BASIC5.2□□□□□ -1.58
COL9A1P20849 DNAJC9-AS1-204ENST00000440197 2865 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
COL9A1P20849 ZNF224-201ENST00000336976 3980 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
COL9A1P20849 CDH9-201ENST00000231021 3079 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
COL9A1P20849 ADAM7-201ENST00000175238 3367 ntAPPRIS P2 TSL 1 (best) BASIC5.19□□□□□ -1.58
COL9A1P20849 SGO2-201ENST00000357799 4214 ntAPPRIS P2 TSL 1 (best) BASIC5.19□□□□□ -1.58
COL9A1P20849 MAPK10-304ENST00000641341 3984 ntBASIC5.19□□□□□ -1.58
COL9A1P20849 PRKAA1-204ENST00000397128 5088 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
COL9A1P20849 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
COL9A1P20849 ZNF93-201ENST00000343769 2648 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
COL9A1P20849 OR2AT4-203ENST00000641541 8795 ntAPPRIS P1 BASIC5.19□□□□□ -1.58
COL9A1P20849 NRCAM-210ENST00000425651 3915 ntAPPRIS ALT2 TSL 1 (best) BASIC5.19□□□□□ -1.58
COL9A1P20849 R3HCC1L-201ENST00000298999 3379 ntAPPRIS P1 TSL 5 BASIC5.19□□□□□ -1.58
COL9A1P20849 ENKUR-201ENST00000331161 3382 ntAPPRIS P2 TSL 1 (best) BASIC5.19□□□□□ -1.58
COL9A1P20849 AC002543.1-201ENST00000299783 1954 ntBASIC5.19□□□□□ -1.58
COL9A1P20849 DOCK9-207ENST00000442173 7643 ntAPPRIS ALT2 TSL 5 BASIC5.19□□□□□ -1.58
COL9A1P20849 RIC3-202ENST00000335425 5223 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
COL9A1P20849 SNORA70.9-201ENST00000384370 135 ntBASIC5.19□□□□□ -1.58
COL9A1P20849 EI24P2-201ENST00000397776 1076 ntBASIC5.19□□□□□ -1.58
COL9A1P20849 SNORA36B-201ENST00000410438 131 ntBASIC5.19□□□□□ -1.58
COL9A1P20849 RNU2-55P-201ENST00000411146 174 ntBASIC5.19□□□□□ -1.58
COL9A1P20849 AL158837.1-201ENST00000417644 452 ntTSL 2 BASIC5.19□□□□□ -1.58
COL9A1P20849 BX510359.2-201ENST00000417920 305 ntBASIC5.19□□□□□ -1.58
COL9A1P20849 AC099548.1-201ENST00000421443 426 ntBASIC5.19□□□□□ -1.58
COL9A1P20849 RPS29P2-201ENST00000479278 136 ntBASIC5.19□□□□□ -1.58
COL9A1P20849 RNU6-762P-201ENST00000517107 102 ntBASIC5.19□□□□□ -1.58
COL9A1P20849 AC018630.3-201ENST00000542637 96 ntBASIC5.19□□□□□ -1.58
COL9A1P20849 MTND6P33-201ENST00000571794 183 ntBASIC5.19□□□□□ -1.58
COL9A1P20849 AP005432.2-201ENST00000608162 586 ntBASIC5.19□□□□□ -1.58
COL9A1P20849 MCM9-209ENST00000619706 4822 ntAPPRIS P1 TSL 5 BASIC5.19□□□□□ -1.58
COL9A1P20849 STK3-216ENST00000523601 3107 ntTSL 2 BASIC5.19□□□□□ -1.58
COL9A1P20849 ALG10B-201ENST00000308742 10253 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
COL9A1P20849 CPNE4-214ENST00000617767 3556 ntTSL 2 BASIC5.19□□□□□ -1.58
COL9A1P20849 ZNF83-202ENST00000536937 2726 ntAPPRIS P1 TSL 2 BASIC5.19□□□□□ -1.58
COL9A1P20849 RORB-201ENST00000376896 9551 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
COL9A1P20849 GPALPP1-201ENST00000357537 5368 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
COL9A1P20849 FASTKD1-205ENST00000453929 2791 ntTSL 2 BASIC5.19□□□□□ -1.58
COL9A1P20849 AL033384.1-202ENST00000431554 3104 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
COL9A1P20849 ZNF260-204ENST00000592282 5055 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
COL9A1P20849 AL356489.2-201ENST00000566968 3528 ntBASIC5.18□□□□□ -1.58
COL9A1P20849 SNX10-202ENST00000396376 2491 ntAPPRIS P2 TSL 1 (best) BASIC5.18□□□□□ -1.58
COL9A1P20849 ZNF347-201ENST00000334197 7960 ntAPPRIS P3 TSL 1 (best) BASIC5.18□□□□□ -1.58
COL9A1P20849 PPP1R9A-201ENST00000289495 3983 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
COL9A1P20849 POC1B-201ENST00000313546 3001 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
COL9A1P20849 RNU6-335P-201ENST00000364563 113 ntBASIC5.18□□□□□ -1.58
COL9A1P20849 RNU6-1336P-201ENST00000383886 109 ntBASIC5.18□□□□□ -1.58
COL9A1P20849 RNU6-1080P-201ENST00000383982 107 ntBASIC5.18□□□□□ -1.58
COL9A1P20849 MIR1278-201ENST00000408753 81 ntBASIC5.18□□□□□ -1.58
COL9A1P20849 RPEP3-201ENST00000425462 676 ntBASIC5.18□□□□□ -1.58
COL9A1P20849 AP000844.1-201ENST00000446631 577 ntTSL 3 BASIC5.18□□□□□ -1.58
COL9A1P20849 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC5.18□□□□□ -1.58
COL9A1P20849 RPS4XP2-201ENST00000458402 793 ntBASIC5.18□□□□□ -1.58
COL9A1P20849 RPL23AP94-201ENST00000512518 302 ntBASIC5.18□□□□□ -1.58
COL9A1P20849 RNU6-781P-201ENST00000516377 101 ntBASIC5.18□□□□□ -1.58
COL9A1P20849 RNU7-115P-201ENST00000516433 55 ntBASIC5.18□□□□□ -1.58
COL9A1P20849 RNA5SP43-201ENST00000516559 110 ntBASIC5.18□□□□□ -1.58
COL9A1P20849 RNU6-1282P-201ENST00000516735 96 ntBASIC5.18□□□□□ -1.58
COL9A1P20849 RGS5-208ENST00000530507 851 ntAPPRIS ALT1 TSL 3 BASIC5.18□□□□□ -1.58
COL9A1P20849 AC025281.1-201ENST00000567026 265 ntBASIC5.18□□□□□ -1.58
COL9A1P20849 MIR4458-201ENST00000578872 75 ntBASIC5.18□□□□□ -1.58
COL9A1P20849 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC5.18□□□□□ -1.58
COL9A1P20849 LINC00904-201ENST00000604453 471 ntTSL 2 BASIC5.18□□□□□ -1.58
COL9A1P20849 AL137843.1-201ENST00000605078 385 ntBASIC5.18□□□□□ -1.58
COL9A1P20849 AP001318.4-201ENST00000616637 121 ntBASIC5.18□□□□□ -1.58
COL9A1P20849 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC5.18□□□□□ -1.58
COL9A1P20849 FOXP1-IT1-201ENST00000498714 3539 ntTSL 2 BASIC5.18□□□□□ -1.58
COL9A1P20849 SYNCRIP-204ENST00000616122 6764 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
COL9A1P20849 ZBTB38-201ENST00000321464 3588 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
COL9A1P20849 C3orf58-202ENST00000441925 3260 ntTSL 2 BASIC5.18□□□□□ -1.58
COL9A1P20849 AC010300.1-201ENST00000600671 5134 ntBASIC5.18□□□□□ -1.58
COL9A1P20849 FP236241.1-201ENST00000623374 7632 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
COL9A1P20849 CU633967.1-211ENST00000624444 7628 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
COL9A1P20849 ABCA10-201ENST00000269081 6362 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
COL9A1P20849 MCF2L2-202ENST00000414362 3031 ntTSL 2 BASIC5.18□□□□□ -1.58
COL9A1P20849 LEPR-208ENST00000616738 5081 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
COL9A1P20849 SLC2A2-201ENST00000314251 3210 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
COL9A1P20849 TXK-201ENST00000264316 2914 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
COL9A1P20849 NAV3-201ENST00000397909 9821 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
COL9A1P20849 CDR1-201ENST00000370532 2467 ntAPPRIS P1 BASIC5.17□□□□□ -1.58
COL9A1P20849 AKAP6-212ENST00000557272 4601 ntTSL 5 BASIC5.17□□□□□ -1.58
COL9A1P20849 MECOM-209ENST00000472280 3593 ntTSL 5 BASIC5.17□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 105.4 ms