Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
COL6A1P12109 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC4.07□□□□□ -1.76
COL6A1P12109 MIR15A-201ENST00000607334 83 ntBASIC4.07□□□□□ -1.76
COL6A1P12109 MPP6-209ENST00000625307 126 ntTSL 5 BASIC4.07□□□□□ -1.76
COL6A1P12109 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
COL6A1P12109 MAPK10-373ENST00000641983 6772 ntBASIC4.07□□□□□ -1.76
COL6A1P12109 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
COL6A1P12109 IBTK-209ENST00000510291 4109 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
COL6A1P12109 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC4.07□□□□□ -1.76
COL6A1P12109 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC4.07□□□□□ -1.76
COL6A1P12109 TMEM67-202ENST00000409623 3255 ntTSL 2 BASIC4.06□□□□□ -1.76
COL6A1P12109 IPO8P1-201ENST00000455509 3109 ntBASIC4.06□□□□□ -1.76
COL6A1P12109 FGD4-211ENST00000531134 2924 ntTSL 2 BASIC4.06□□□□□ -1.76
COL6A1P12109 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC4.06□□□□□ -1.76
COL6A1P12109 RNU4-35P-201ENST00000362588 141 ntBASIC4.06□□□□□ -1.76
COL6A1P12109 MIR517A-201ENST00000385001 87 ntBASIC4.06□□□□□ -1.76
COL6A1P12109 U3.19-201ENST00000390893 196 ntBASIC4.06□□□□□ -1.76
COL6A1P12109 U3.42-201ENST00000408746 214 ntBASIC4.06□□□□□ -1.76
COL6A1P12109 RPL21P90-201ENST00000415692 466 ntBASIC4.06□□□□□ -1.76
COL6A1P12109 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC4.06□□□□□ -1.76
COL6A1P12109 MTATP6P4-201ENST00000427725 675 ntBASIC4.06□□□□□ -1.76
COL6A1P12109 AC084357.1-201ENST00000473404 255 ntBASIC4.06□□□□□ -1.76
COL6A1P12109 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC4.06□□□□□ -1.76
COL6A1P12109 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC4.06□□□□□ -1.76
COL6A1P12109 UBE3AP2-201ENST00000429033 2259 ntBASIC4.06□□□□□ -1.76
COL6A1P12109 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC4.06□□□□□ -1.76
COL6A1P12109 PLCL1-203ENST00000437704 5979 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
COL6A1P12109 SEC23A-202ENST00000537403 4215 ntTSL 2 BASIC4.06□□□□□ -1.76
COL6A1P12109 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
COL6A1P12109 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC4.05□□□□□ -1.76
COL6A1P12109 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC4.05□□□□□ -1.76
COL6A1P12109 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC4.05□□□□□ -1.76
COL6A1P12109 PPIP5K2-215ENST00000613674 4933 ntAPPRIS ALT2 TSL 2 BASIC4.05□□□□□ -1.76
COL6A1P12109 EBAG9-210ENST00000620557 2186 ntAPPRIS P1 TSL 3 BASIC4.05□□□□□ -1.76
COL6A1P12109 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
COL6A1P12109 AC138393.1-203ENST00000327086 343 ntBASIC4.05□□□□□ -1.76
COL6A1P12109 Y_RNA.380-201ENST00000365663 111 ntBASIC4.05□□□□□ -1.76
COL6A1P12109 RNU6-1329P-201ENST00000365664 107 ntBASIC4.05□□□□□ -1.76
COL6A1P12109 RNU6-76P-201ENST00000384060 104 ntBASIC4.05□□□□□ -1.76
COL6A1P12109 MT-TR-201ENST00000387439 65 ntBASIC4.05□□□□□ -1.76
COL6A1P12109 RNA5SP424-201ENST00000390988 115 ntBASIC4.05□□□□□ -1.76
COL6A1P12109 RNA5SP104-201ENST00000410989 118 ntBASIC4.05□□□□□ -1.76
COL6A1P12109 LINC00279-201ENST00000413486 473 ntTSL 3 BASIC4.05□□□□□ -1.76
COL6A1P12109 AC243428.1-201ENST00000421099 264 ntBASIC4.05□□□□□ -1.76
COL6A1P12109 USP9YP16-201ENST00000430287 407 ntBASIC4.05□□□□□ -1.76
COL6A1P12109 AC087650.1-201ENST00000431445 468 ntBASIC4.05□□□□□ -1.76
COL6A1P12109 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC4.05□□□□□ -1.76
COL6A1P12109 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC4.05□□□□□ -1.76
COL6A1P12109 USP9YP23-201ENST00000455085 407 ntBASIC4.05□□□□□ -1.76
COL6A1P12109 RNU7-187P-201ENST00000458985 68 ntBASIC4.05□□□□□ -1.76
COL6A1P12109 AC025518.1-201ENST00000479856 347 ntBASIC4.05□□□□□ -1.76
COL6A1P12109 RN7SL283P-201ENST00000489055 303 ntBASIC4.05□□□□□ -1.76
COL6A1P12109 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC4.05□□□□□ -1.76
COL6A1P12109 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC4.05□□□□□ -1.76
COL6A1P12109 AC109446.1-201ENST00000566172 220 ntBASIC4.05□□□□□ -1.76
COL6A1P12109 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC4.05□□□□□ -1.76
COL6A1P12109 AL355297.3-201ENST00000604082 446 ntBASIC4.05□□□□□ -1.76
COL6A1P12109 NUTF2P8-201ENST00000604593 363 ntBASIC4.05□□□□□ -1.76
COL6A1P12109 ELOCP5-201ENST00000604924 333 ntBASIC4.05□□□□□ -1.76
COL6A1P12109 AC018889.1-201ENST00000605372 397 ntBASIC4.05□□□□□ -1.76
COL6A1P12109 AL138825.1-201ENST00000618587 192 ntBASIC4.05□□□□□ -1.76
COL6A1P12109 AL606534.2-204ENST00000635008 178 ntBASIC4.05□□□□□ -1.76
COL6A1P12109 AP000553.6-201ENST00000641242 118 ntBASIC4.05□□□□□ -1.76
COL6A1P12109 GLIPR1-201ENST00000266659 5877 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
COL6A1P12109 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
COL6A1P12109 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
COL6A1P12109 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC4.04□□□□□ -1.76
COL6A1P12109 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
COL6A1P12109 AL356274.2-201ENST00000624379 3752 ntBASIC4.04□□□□□ -1.76
COL6A1P12109 UTRN-204ENST00000367545 12339 ntAPPRIS P1 TSL 5 BASIC4.04□□□□□ -1.76
COL6A1P12109 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC4.04□□□□□ -1.76
COL6A1P12109 RNU6-1059P-201ENST00000363752 98 ntBASIC4.04□□□□□ -1.76
COL6A1P12109 SNORD74.4-201ENST00000364129 80 ntBASIC4.04□□□□□ -1.76
COL6A1P12109 RNU6-371P-201ENST00000364283 108 ntBASIC4.04□□□□□ -1.76
COL6A1P12109 RNU6-1303P-201ENST00000364841 107 ntBASIC4.04□□□□□ -1.76
COL6A1P12109 SNORA63.7-201ENST00000365579 123 ntBASIC4.04□□□□□ -1.76
COL6A1P12109 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
COL6A1P12109 RPS15AP6-201ENST00000420703 385 ntBASIC4.04□□□□□ -1.76
COL6A1P12109 AC011816.1-201ENST00000441346 546 ntBASIC4.04□□□□□ -1.76
COL6A1P12109 PCMTD1P1-201ENST00000455560 355 ntBASIC4.04□□□□□ -1.76
COL6A1P12109 S100A11P2-201ENST00000467589 312 ntBASIC4.04□□□□□ -1.76
COL6A1P12109 RPS15AP34-201ENST00000487776 387 ntBASIC4.04□□□□□ -1.76
COL6A1P12109 AC018437.1-201ENST00000492214 406 ntBASIC4.04□□□□□ -1.76
COL6A1P12109 SNORA31.1-201ENST00000515993 133 ntBASIC4.04□□□□□ -1.76
COL6A1P12109 RNU6-120P-201ENST00000516077 103 ntBASIC4.04□□□□□ -1.76
COL6A1P12109 SNORA31.5-201ENST00000516190 133 ntBASIC4.04□□□□□ -1.76
COL6A1P12109 AC022616.4-201ENST00000522985 181 ntBASIC4.04□□□□□ -1.76
COL6A1P12109 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC4.04□□□□□ -1.76
COL6A1P12109 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC4.04□□□□□ -1.76
COL6A1P12109 HSBP1P1-201ENST00000555205 166 ntBASIC4.04□□□□□ -1.76
COL6A1P12109 IGKV2OR2-8-201ENST00000558710 300 ntBASIC4.04□□□□□ -1.76
COL6A1P12109 AC090877.1-201ENST00000561418 344 ntBASIC4.04□□□□□ -1.76
COL6A1P12109 SUB1P3-201ENST00000564581 315 ntBASIC4.04□□□□□ -1.76
COL6A1P12109 MIR548AC-201ENST00000585049 88 ntBASIC4.04□□□□□ -1.76
COL6A1P12109 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC4.04□□□□□ -1.76
COL6A1P12109 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC4.04□□□□□ -1.76
COL6A1P12109 RNU6-85P-201ENST00000605989 107 ntBASIC4.04□□□□□ -1.76
COL6A1P12109 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC4.04□□□□□ -1.76
COL6A1P12109 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
COL6A1P12109 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC4.04□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 104 ms