Protein–RNA interactions for Protein: P03905

MT-ND4, NADH-ubiquinone oxidoreductase chain 4, humanhuman

Predictions only

Length 459 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MT-ND4P03905 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC1.62□□□□□ -2.15
MT-ND4P03905 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.61□□□□□ -2.15
MT-ND4P03905 AC138393.1-203ENST00000327086 343 ntBASIC1.61□□□□□ -2.15
MT-ND4P03905 RNU6-39P-201ENST00000384344 107 ntBASIC1.61□□□□□ -2.15
MT-ND4P03905 RNU6ATAC38P-201ENST00000408119 126 ntBASIC1.61□□□□□ -2.15
MT-ND4P03905 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC1.61□□□□□ -2.15
MT-ND4P03905 AC064871.1-202ENST00000413954 382 ntTSL 5 BASIC1.61□□□□□ -2.15
MT-ND4P03905 AC114491.1-201ENST00000416095 246 ntBASIC1.61□□□□□ -2.15
MT-ND4P03905 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC1.61□□□□□ -2.15
MT-ND4P03905 AC009518.2-201ENST00000418056 731 ntBASIC1.61□□□□□ -2.15
MT-ND4P03905 GS1-594A7.3-201ENST00000421585 574 ntTSL 2 BASIC1.61□□□□□ -2.15
MT-ND4P03905 AL160275.3-201ENST00000423876 471 ntBASIC1.61□□□□□ -2.15
MT-ND4P03905 AL139415.2-201ENST00000431968 163 ntBASIC1.61□□□□□ -2.15
MT-ND4P03905 TRBV25OR9-2-201ENST00000438417 374 ntBASIC1.61□□□□□ -2.15
MT-ND4P03905 AL161788.1-201ENST00000441805 169 ntBASIC1.61□□□□□ -2.15
MT-ND4P03905 EPS15P1-201ENST00000448836 336 ntBASIC1.61□□□□□ -2.15
MT-ND4P03905 CSN1S2AP-201ENST00000451783 779 ntTSL 1 (best) BASIC1.61□□□□□ -2.15
MT-ND4P03905 AL160287.1-201ENST00000455612 432 ntTSL 3 BASIC1.61□□□□□ -2.15
MT-ND4P03905 snoU109.1-201ENST00000459339 135 ntBASIC1.61□□□□□ -2.15
MT-ND4P03905 CKS1BP2-201ENST00000497342 240 ntBASIC1.61□□□□□ -2.15
MT-ND4P03905 AP002075.1-201ENST00000505091 603 ntTSL 3 BASIC1.61□□□□□ -2.15
MT-ND4P03905 AC117522.2-201ENST00000510049 657 ntBASIC1.61□□□□□ -2.15
MT-ND4P03905 AC008549.1-201ENST00000512900 643 ntBASIC1.61□□□□□ -2.15
MT-ND4P03905 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC1.61□□□□□ -2.15
MT-ND4P03905 CCDC7-208ENST00000537047 657 ntAPPRIS ALT2 TSL 1 (best) BASIC1.61□□□□□ -2.15
MT-ND4P03905 CCDC7-209ENST00000539197 581 ntAPPRIS ALT2 TSL 1 (best) BASIC1.61□□□□□ -2.15
MT-ND4P03905 AC133480.1-201ENST00000547563 381 ntTSL 3 BASIC1.61□□□□□ -2.15
MT-ND4P03905 MIR3126-201ENST00000577443 74 ntBASIC1.61□□□□□ -2.15
MT-ND4P03905 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC1.61□□□□□ -2.15
MT-ND4P03905 NDUFA8P1-201ENST00000605525 367 ntBASIC1.61□□□□□ -2.15
MT-ND4P03905 AC087045.1-201ENST00000605856 382 ntBASIC1.61□□□□□ -2.15
MT-ND4P03905 RNU6-87P-201ENST00000607561 108 ntBASIC1.61□□□□□ -2.15
MT-ND4P03905 RNU6-91P-201ENST00000607774 107 ntBASIC1.61□□□□□ -2.15
MT-ND4P03905 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC1.61□□□□□ -2.15
MT-ND4P03905 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC1.61□□□□□ -2.15
MT-ND4P03905 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC1.61□□□□□ -2.15
MT-ND4P03905 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC1.61□□□□□ -2.15
MT-ND4P03905 AC009487.4-201ENST00000624969 3585 ntBASIC1.6□□□□□ -2.15
MT-ND4P03905 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC1.6□□□□□ -2.15
MT-ND4P03905 MT-ND2-201ENST00000361453 1042 ntAPPRIS P1 BASIC1.6□□□□□ -2.15
MT-ND4P03905 RNU6-858P-201ENST00000362436 107 ntBASIC1.6□□□□□ -2.15
MT-ND4P03905 RNA5SP363-201ENST00000365072 115 ntBASIC1.6□□□□□ -2.15
MT-ND4P03905 RNU6-1032P-201ENST00000384100 107 ntBASIC1.6□□□□□ -2.15
MT-ND4P03905 MIR95-201ENST00000385072 81 ntBASIC1.6□□□□□ -2.15
MT-ND4P03905 AL591034.2-201ENST00000402839 359 ntBASIC1.6□□□□□ -2.15
MT-ND4P03905 RNU6-1140P-201ENST00000410517 106 ntBASIC1.6□□□□□ -2.15
MT-ND4P03905 Y_RNA.623-201ENST00000411128 95 ntBASIC1.6□□□□□ -2.15
MT-ND4P03905 RNA5SP508-201ENST00000411327 119 ntBASIC1.6□□□□□ -2.15
MT-ND4P03905 AC127391.1-201ENST00000411737 98 ntBASIC1.6□□□□□ -2.15
MT-ND4P03905 AL365338.1-201ENST00000422282 858 ntBASIC1.6□□□□□ -2.15
MT-ND4P03905 AL589986.2-201ENST00000429352 397 ntTSL 2 BASIC1.6□□□□□ -2.15
MT-ND4P03905 AC119618.1-201ENST00000434191 222 ntBASIC1.6□□□□□ -2.15
MT-ND4P03905 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC1.6□□□□□ -2.15
MT-ND4P03905 AC009238.1-201ENST00000442165 424 ntBASIC1.6□□□□□ -2.15
MT-ND4P03905 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC1.6□□□□□ -2.15
MT-ND4P03905 AC009237.6-201ENST00000446969 424 ntBASIC1.6□□□□□ -2.15
MT-ND4P03905 ZNF114P1-201ENST00000453500 292 ntBASIC1.6□□□□□ -2.15
MT-ND4P03905 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC1.6□□□□□ -2.15
MT-ND4P03905 PCDH9-AS4-201ENST00000456459 436 ntTSL 3 BASIC1.6□□□□□ -2.15
MT-ND4P03905 AC117503.1-201ENST00000472241 394 ntBASIC1.6□□□□□ -2.15
MT-ND4P03905 MED28P2-201ENST00000475771 317 ntBASIC1.6□□□□□ -2.15
MT-ND4P03905 AP000797.1-201ENST00000478870 387 ntBASIC1.6□□□□□ -2.15
MT-ND4P03905 AC112206.3-201ENST00000514578 389 ntBASIC1.6□□□□□ -2.15
MT-ND4P03905 APELA-204ENST00000515275 551 ntAPPRIS P1 TSL 3 BASIC1.6□□□□□ -2.15
MT-ND4P03905 AC093206.1-201ENST00000515364 497 ntTSL 3 BASIC1.6□□□□□ -2.15
MT-ND4P03905 AC090796.1-201ENST00000520370 567 ntTSL 4 BASIC1.6□□□□□ -2.15
MT-ND4P03905 AP005639.2-201ENST00000527592 928 ntBASIC1.6□□□□□ -2.15
MT-ND4P03905 OR5AL2P-201ENST00000532185 920 ntBASIC1.6□□□□□ -2.15
MT-ND4P03905 AC123905.1-201ENST00000552098 541 ntTSL 4 BASIC1.6□□□□□ -2.15
MT-ND4P03905 AC012404.2-201ENST00000558572 481 ntTSL 3 BASIC1.6□□□□□ -2.15
MT-ND4P03905 AC136619.2-201ENST00000563361 631 ntBASIC1.6□□□□□ -2.15
MT-ND4P03905 AC002400.1-201ENST00000569310 726 ntBASIC1.6□□□□□ -2.15
MT-ND4P03905 AC008741.1-201ENST00000569456 510 ntTSL 3 BASIC1.6□□□□□ -2.15
MT-ND4P03905 AL670729.3-201ENST00000602345 574 ntTSL 4 BASIC1.6□□□□□ -2.15
MT-ND4P03905 DEFB131E-202ENST00000602581 683 ntBASIC1.6□□□□□ -2.15
MT-ND4P03905 AL359999.1-201ENST00000604513 294 ntBASIC1.6□□□□□ -2.15
MT-ND4P03905 AL158032.1-201ENST00000605401 106 ntBASIC1.6□□□□□ -2.15
MT-ND4P03905 AC018638.7-201ENST00000605836 1114 ntBASIC1.6□□□□□ -2.15
MT-ND4P03905 AC138749.5-201ENST00000611461 208 ntBASIC1.6□□□□□ -2.15
MT-ND4P03905 AL359547.2-201ENST00000615810 418 ntBASIC1.6□□□□□ -2.15
MT-ND4P03905 AC116165.2-201ENST00000616705 206 ntBASIC1.6□□□□□ -2.15
MT-ND4P03905 AC092656.1-203ENST00000624134 423 ntBASIC1.6□□□□□ -2.15
MT-ND4P03905 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC1.6□□□□□ -2.15
MT-ND4P03905 RGS13-201ENST00000391995 1505 ntAPPRIS P1 TSL 1 (best) BASIC1.6□□□□□ -2.15
MT-ND4P03905 ATP8A2P3-201ENST00000426792 1536 ntBASIC1.6□□□□□ -2.15
MT-ND4P03905 ZNF355P-201ENST00000427301 3216 ntBASIC1.59□□□□□ -2.15
MT-ND4P03905 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.59□□□□□ -2.15
MT-ND4P03905 RBBP8P1-201ENST00000449447 1844 ntBASIC1.59□□□□□ -2.15
MT-ND4P03905 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC1.59□□□□□ -2.15
MT-ND4P03905 AC073343.1-201ENST00000328239 651 ntBASIC1.59□□□□□ -2.15
MT-ND4P03905 RNU5E-1-201ENST00000362477 120 ntBASIC1.59□□□□□ -2.15
MT-ND4P03905 RNU6-942P-201ENST00000363002 107 ntBASIC1.59□□□□□ -2.15
MT-ND4P03905 Y_RNA.111-201ENST00000363248 100 ntBASIC1.59□□□□□ -2.15
MT-ND4P03905 RNA5SP240-201ENST00000365355 128 ntBASIC1.59□□□□□ -2.15
MT-ND4P03905 AL356432.1-201ENST00000405809 419 ntBASIC1.59□□□□□ -2.15
MT-ND4P03905 SNORD56-201ENST00000413522 71 ntBASIC1.59□□□□□ -2.15
MT-ND4P03905 AC008267.5-201ENST00000424928 265 ntBASIC1.59□□□□□ -2.15
MT-ND4P03905 AL589872.1-201ENST00000426602 288 ntBASIC1.59□□□□□ -2.15
MT-ND4P03905 LINC00392-201ENST00000430033 557 ntTSL 3 BASIC1.59□□□□□ -2.15
MT-ND4P03905 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC1.59□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 100.9 ms