Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 HLFP1-201ENST00000402375 499 ntBASIC4.2□□□□□ -1.74
HIF3AQ9Y2N7 AL357075.1-201ENST00000404107 726 ntBASIC4.2□□□□□ -1.74
HIF3AQ9Y2N7 RN7SKP267-201ENST00000410381 285 ntBASIC4.2□□□□□ -1.74
HIF3AQ9Y2N7 EIF1AXP1-201ENST00000419267 435 ntBASIC4.2□□□□□ -1.74
HIF3AQ9Y2N7 RPS4XP22-201ENST00000480755 780 ntBASIC4.2□□□□□ -1.74
HIF3AQ9Y2N7 AC025741.1-201ENST00000506100 544 ntTSL 4 BASIC4.2□□□□□ -1.74
HIF3AQ9Y2N7 RNU6-1073P-201ENST00000517182 106 ntBASIC4.2□□□□□ -1.74
HIF3AQ9Y2N7 AC002428.2-201ENST00000522973 414 ntTSL 3 BASIC4.2□□□□□ -1.74
HIF3AQ9Y2N7 AC091564.3-201ENST00000527398 429 ntTSL 3 BASIC4.2□□□□□ -1.74
HIF3AQ9Y2N7 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC4.2□□□□□ -1.74
HIF3AQ9Y2N7 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC4.2□□□□□ -1.74
HIF3AQ9Y2N7 AL132712.2-201ENST00000556653 127 ntTSL 3 BASIC4.2□□□□□ -1.74
HIF3AQ9Y2N7 LINC00933-203ENST00000559812 219 ntBASIC4.2□□□□□ -1.74
HIF3AQ9Y2N7 AC105129.1-201ENST00000560250 297 ntBASIC4.2□□□□□ -1.74
HIF3AQ9Y2N7 ATP5J2P6-201ENST00000565203 266 ntBASIC4.2□□□□□ -1.74
HIF3AQ9Y2N7 MIR3145-201ENST00000580727 82 ntBASIC4.2□□□□□ -1.74
HIF3AQ9Y2N7 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC4.2□□□□□ -1.74
HIF3AQ9Y2N7 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC4.2□□□□□ -1.74
HIF3AQ9Y2N7 AC023043.4-201ENST00000612081 449 ntBASIC4.2□□□□□ -1.74
HIF3AQ9Y2N7 C7orf77-201ENST00000616258 548 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
HIF3AQ9Y2N7 Clostridiales-1.2-201ENST00000636724 160 ntBASIC4.2□□□□□ -1.74
HIF3AQ9Y2N7 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC4.2□□□□□ -1.74
HIF3AQ9Y2N7 OR56A3-205ENST00000641905 4595 ntAPPRIS P1 BASIC4.2□□□□□ -1.74
HIF3AQ9Y2N7 ANK3-202ENST00000355288 3811 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
HIF3AQ9Y2N7 STON1-GTF2A1L-204ENST00000405008 3821 ntAPPRIS P1 TSL 5 BASIC4.2□□□□□ -1.74
HIF3AQ9Y2N7 AL672167.1-203ENST00000641299 2975 ntBASIC4.2□□□□□ -1.74
HIF3AQ9Y2N7 AKT3-201ENST00000263826 7081 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
HIF3AQ9Y2N7 ETV1-205ENST00000405192 4402 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
HIF3AQ9Y2N7 POLR2B-203ENST00000431623 3666 ntTSL 2 BASIC4.19□□□□□ -1.74
HIF3AQ9Y2N7 AK9-201ENST00000285397 2566 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
HIF3AQ9Y2N7 MEI4-201ENST00000602452 4800 ntAPPRIS P1 TSL 5 BASIC4.19□□□□□ -1.74
HIF3AQ9Y2N7 R3HCC1L-201ENST00000298999 3379 ntAPPRIS P1 TSL 5 BASIC4.19□□□□□ -1.74
HIF3AQ9Y2N7 ZNF534-204ENST00000433050 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC4.19□□□□□ -1.74
HIF3AQ9Y2N7 EEF1A1-211ENST00000615060 3508 ntTSL 5 BASIC4.19□□□□□ -1.74
HIF3AQ9Y2N7 KANSL1L-209ENST00000457374 2264 ntTSL 2 BASIC4.19□□□□□ -1.74
HIF3AQ9Y2N7 MARK2P15-201ENST00000432204 2186 ntBASIC4.19□□□□□ -1.74
HIF3AQ9Y2N7 MCF2-203ENST00000370576 3688 ntAPPRIS P3 TSL 1 (best) BASIC4.19□□□□□ -1.74
HIF3AQ9Y2N7 RNU6-653P-201ENST00000363074 106 ntBASIC4.19□□□□□ -1.74
HIF3AQ9Y2N7 Y_RNA.217-201ENST00000364214 105 ntBASIC4.19□□□□□ -1.74
HIF3AQ9Y2N7 Y_RNA.261-201ENST00000364631 102 ntBASIC4.19□□□□□ -1.74
HIF3AQ9Y2N7 Y_RNA.319-201ENST00000365138 92 ntBASIC4.19□□□□□ -1.74
HIF3AQ9Y2N7 RNA5SP113-201ENST00000410486 84 ntBASIC4.19□□□□□ -1.74
HIF3AQ9Y2N7 COX6B1P1-201ENST00000415962 213 ntBASIC4.19□□□□□ -1.74
HIF3AQ9Y2N7 TRAPPC2P4-201ENST00000421750 331 ntBASIC4.19□□□□□ -1.74
HIF3AQ9Y2N7 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC4.19□□□□□ -1.74
HIF3AQ9Y2N7 AL732292.1-201ENST00000426692 226 ntBASIC4.19□□□□□ -1.74
HIF3AQ9Y2N7 AL512844.2-201ENST00000433990 593 ntBASIC4.19□□□□□ -1.74
HIF3AQ9Y2N7 AL772161.1-201ENST00000439130 476 ntBASIC4.19□□□□□ -1.74
HIF3AQ9Y2N7 Y_RNA.641-201ENST00000459414 105 ntBASIC4.19□□□□□ -1.74
HIF3AQ9Y2N7 RN7SL826P-201ENST00000479724 288 ntBASIC4.19□□□□□ -1.74
HIF3AQ9Y2N7 SRI-210ENST00000490437 570 ntTSL 2 BASIC4.19□□□□□ -1.74
HIF3AQ9Y2N7 UBE2CP3-201ENST00000502715 450 ntBASIC4.19□□□□□ -1.74
HIF3AQ9Y2N7 SNORA40.9-201ENST00000515895 93 ntBASIC4.19□□□□□ -1.74
HIF3AQ9Y2N7 RNU6-1183P-201ENST00000517054 60 ntBASIC4.19□□□□□ -1.74
HIF3AQ9Y2N7 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC4.19□□□□□ -1.74
HIF3AQ9Y2N7 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC4.19□□□□□ -1.74
HIF3AQ9Y2N7 AL391261.3-201ENST00000557194 520 ntBASIC4.19□□□□□ -1.74
HIF3AQ9Y2N7 AC005176.2-201ENST00000596933 147 ntBASIC4.19□□□□□ -1.74
HIF3AQ9Y2N7 BPIFA4P-203ENST00000603168 689 ntBASIC4.19□□□□□ -1.74
HIF3AQ9Y2N7 LGALS13-204ENST00000621475 494 ntAPPRIS ALT2 TSL 5 BASIC4.19□□□□□ -1.74
HIF3AQ9Y2N7 SCN1A-210ENST00000635776 10107 ntTSL 5 BASIC4.19□□□□□ -1.74
HIF3AQ9Y2N7 HIPK3-204ENST00000525975 3668 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
HIF3AQ9Y2N7 ZNF204P-201ENST00000416749 2397 ntBASIC4.19□□□□□ -1.74
HIF3AQ9Y2N7 CHL1-216ENST00000620033 7311 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
HIF3AQ9Y2N7 SLC38A2-209ENST00000551374 2802 ntTSL 2 BASIC4.18□□□□□ -1.74
HIF3AQ9Y2N7 CENPE-202ENST00000380026 8241 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
HIF3AQ9Y2N7 AL360270.1-201ENST00000440689 2359 ntTSL 2 BASIC4.18□□□□□ -1.74
HIF3AQ9Y2N7 Z98749.2-208ENST00000381646 500 ntBASIC4.18□□□□□ -1.74
HIF3AQ9Y2N7 RNU6-211P-201ENST00000384047 107 ntBASIC4.18□□□□□ -1.74
HIF3AQ9Y2N7 SNORA29-201ENST00000384183 140 ntBASIC4.18□□□□□ -1.74
HIF3AQ9Y2N7 EIF4EBP2P3-201ENST00000403144 334 ntBASIC4.18□□□□□ -1.74
HIF3AQ9Y2N7 RNU6-257P-201ENST00000410238 98 ntBASIC4.18□□□□□ -1.74
HIF3AQ9Y2N7 RNU2-2P-201ENST00000410396 191 ntBASIC4.18□□□□□ -1.74
HIF3AQ9Y2N7 AL390729.2-201ENST00000416137 156 ntBASIC4.18□□□□□ -1.74
HIF3AQ9Y2N7 RPL7AP25-201ENST00000423357 805 ntBASIC4.18□□□□□ -1.74
HIF3AQ9Y2N7 AL354863.1-202ENST00000431695 494 ntTSL 5 BASIC4.18□□□□□ -1.74
HIF3AQ9Y2N7 SEPT7P4-201ENST00000437076 306 ntBASIC4.18□□□□□ -1.74
HIF3AQ9Y2N7 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC4.18□□□□□ -1.74
HIF3AQ9Y2N7 MTATP6P7-201ENST00000453315 681 ntBASIC4.18□□□□□ -1.74
HIF3AQ9Y2N7 SNRPGP7-201ENST00000469016 106 ntBASIC4.18□□□□□ -1.74
HIF3AQ9Y2N7 AC078817.1-201ENST00000492623 435 ntBASIC4.18□□□□□ -1.74
HIF3AQ9Y2N7 AC108022.1-201ENST00000493466 478 ntBASIC4.18□□□□□ -1.74
HIF3AQ9Y2N7 RPL36AP41-201ENST00000493820 306 ntBASIC4.18□□□□□ -1.74
HIF3AQ9Y2N7 RNA5SP446-201ENST00000515955 82 ntBASIC4.18□□□□□ -1.74
HIF3AQ9Y2N7 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC4.18□□□□□ -1.74
HIF3AQ9Y2N7 AP001880.2-201ENST00000538233 448 ntBASIC4.18□□□□□ -1.74
HIF3AQ9Y2N7 MFAP5-211ENST00000540087 492 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
HIF3AQ9Y2N7 AL110118.1-201ENST00000553543 400 ntBASIC4.18□□□□□ -1.74
HIF3AQ9Y2N7 RNU2-4P-201ENST00000606190 192 ntBASIC4.18□□□□□ -1.74
HIF3AQ9Y2N7 U2.15-201ENST00000611544 191 ntBASIC4.18□□□□□ -1.74
HIF3AQ9Y2N7 U2.16-201ENST00000613119 191 ntBASIC4.18□□□□□ -1.74
HIF3AQ9Y2N7 U2.12-201ENST00000613778 191 ntBASIC4.18□□□□□ -1.74
HIF3AQ9Y2N7 U2.9-201ENST00000615427 191 ntBASIC4.18□□□□□ -1.74
HIF3AQ9Y2N7 U2.11-201ENST00000616345 191 ntBASIC4.18□□□□□ -1.74
HIF3AQ9Y2N7 U2.2-201ENST00000616535 191 ntBASIC4.18□□□□□ -1.74
HIF3AQ9Y2N7 U2.3-201ENST00000617785 191 ntBASIC4.18□□□□□ -1.74
HIF3AQ9Y2N7 U2.19-201ENST00000618602 191 ntBASIC4.18□□□□□ -1.74
HIF3AQ9Y2N7 RNU2-1-201ENST00000618664 191 ntBASIC4.18□□□□□ -1.74
HIF3AQ9Y2N7 U2.6-201ENST00000619225 191 ntBASIC4.18□□□□□ -1.74
HIF3AQ9Y2N7 U2.5-201ENST00000619465 191 ntBASIC4.18□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 104.2 ms