Protein–RNA interactions for Protein: Q9Y239

NOD1, Nucleotide-binding oligomerization domain-containing protein 1, humanhuman

Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NOD1Q9Y239 FGD4-213ENST00000546442 3503 ntTSL 5 BASIC4.87□□□□□ -1.63
NOD1Q9Y239 RNF38-201ENST00000259605 5012 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
NOD1Q9Y239 AP5M1-201ENST00000261558 11737 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
NOD1Q9Y239 PIKFYVE-201ENST00000264380 9901 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
NOD1Q9Y239 CTNNA3-203ENST00000433211 10675 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
NOD1Q9Y239 GABRA2-211ENST00000514090 3401 ntAPPRIS P1 TSL 5 BASIC4.86□□□□□ -1.63
NOD1Q9Y239 SNORD56.1-201ENST00000362913 68 ntBASIC4.86□□□□□ -1.63
NOD1Q9Y239 RNU6-682P-201ENST00000363843 106 ntBASIC4.86□□□□□ -1.63
NOD1Q9Y239 RNU1-140P-201ENST00000365040 165 ntBASIC4.86□□□□□ -1.63
NOD1Q9Y239 Y_RNA.319-201ENST00000365138 92 ntBASIC4.86□□□□□ -1.63
NOD1Q9Y239 RNY4P28-201ENST00000365281 93 ntBASIC4.86□□□□□ -1.63
NOD1Q9Y239 RNU1-73P-201ENST00000383971 164 ntBASIC4.86□□□□□ -1.63
NOD1Q9Y239 PPIAP31-201ENST00000405422 495 ntBASIC4.86□□□□□ -1.63
NOD1Q9Y239 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC4.86□□□□□ -1.63
NOD1Q9Y239 WARS2P1-201ENST00000429678 537 ntBASIC4.86□□□□□ -1.63
NOD1Q9Y239 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC4.86□□□□□ -1.63
NOD1Q9Y239 NDUFB4P6-201ENST00000436819 366 ntBASIC4.86□□□□□ -1.63
NOD1Q9Y239 RPL37P4-201ENST00000448908 268 ntBASIC4.86□□□□□ -1.63
NOD1Q9Y239 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC4.86□□□□□ -1.63
NOD1Q9Y239 AC073901.1-201ENST00000462471 408 ntBASIC4.86□□□□□ -1.63
NOD1Q9Y239 AC078918.1-201ENST00000498515 228 ntBASIC4.86□□□□□ -1.63
NOD1Q9Y239 AC020593.1-201ENST00000507399 299 ntBASIC4.86□□□□□ -1.63
NOD1Q9Y239 RN7SKP49-201ENST00000516675 260 ntBASIC4.86□□□□□ -1.63
NOD1Q9Y239 AK6P2-201ENST00000549020 471 ntBASIC4.86□□□□□ -1.63
NOD1Q9Y239 AC027288.2-201ENST00000553028 243 ntBASIC4.86□□□□□ -1.63
NOD1Q9Y239 MIR5695-201ENST00000579717 85 ntBASIC4.86□□□□□ -1.63
NOD1Q9Y239 SNORA43.4-201ENST00000629559 138 ntBASIC4.86□□□□□ -1.63
NOD1Q9Y239 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC4.86□□□□□ -1.63
NOD1Q9Y239 KCNJ16-211ENST00000615244 4190 ntAPPRIS P1 TSL 4 BASIC4.86□□□□□ -1.63
NOD1Q9Y239 MUC7-201ENST00000304887 2443 ntAPPRIS P2 TSL 1 (best) BASIC4.86□□□□□ -1.63
NOD1Q9Y239 FMO2-201ENST00000209929 3851 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
NOD1Q9Y239 AKAP4-201ENST00000358526 2881 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
NOD1Q9Y239 ELF2-203ENST00000379550 3278 ntTSL 5 BASIC4.85□□□□□ -1.63
NOD1Q9Y239 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
NOD1Q9Y239 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC4.85□□□□□ -1.63
NOD1Q9Y239 RASSF6-204ENST00000395777 2735 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
NOD1Q9Y239 FAM107B-229ENST00000622567 3510 ntAPPRIS P1 TSL 2 BASIC4.85□□□□□ -1.63
NOD1Q9Y239 RNU1-108P-201ENST00000362556 161 ntBASIC4.85□□□□□ -1.63
NOD1Q9Y239 RNU5B-2P-201ENST00000363036 113 ntBASIC4.85□□□□□ -1.63
NOD1Q9Y239 RN7SKP280-201ENST00000364196 304 ntBASIC4.85□□□□□ -1.63
NOD1Q9Y239 Y_RNA.292-201ENST00000364904 97 ntBASIC4.85□□□□□ -1.63
NOD1Q9Y239 RGS4-201ENST00000367906 930 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
NOD1Q9Y239 MIR10B-201ENST00000385011 110 ntBASIC4.85□□□□□ -1.63
NOD1Q9Y239 MIR23A-201ENST00000385245 73 ntBASIC4.85□□□□□ -1.63
NOD1Q9Y239 MTHFD2P2-201ENST00000407725 247 ntBASIC4.85□□□□□ -1.63
NOD1Q9Y239 RPL23AP95-201ENST00000426806 265 ntBASIC4.85□□□□□ -1.63
NOD1Q9Y239 AL121872.1-202ENST00000435867 308 ntTSL 5 BASIC4.85□□□□□ -1.63
NOD1Q9Y239 COX6CP14-201ENST00000469580 174 ntBASIC4.85□□□□□ -1.63
NOD1Q9Y239 LINC02149-201ENST00000511443 558 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
NOD1Q9Y239 SNORD116-28-201ENST00000516123 91 ntBASIC4.85□□□□□ -1.63
NOD1Q9Y239 Y_RNA.683-201ENST00000516508 93 ntBASIC4.85□□□□□ -1.63
NOD1Q9Y239 RNU6-861P-201ENST00000516745 106 ntBASIC4.85□□□□□ -1.63
NOD1Q9Y239 AC023632.4-201ENST00000517783 191 ntBASIC4.85□□□□□ -1.63
NOD1Q9Y239 HSPE1P5-201ENST00000561489 272 ntBASIC4.85□□□□□ -1.63
NOD1Q9Y239 AC243829.5-201ENST00000578447 247 ntTSL 5 BASIC4.85□□□□□ -1.63
NOD1Q9Y239 AC091178.1-203ENST00000584586 279 ntBASIC4.85□□□□□ -1.63
NOD1Q9Y239 AL356157.2-201ENST00000605122 111 ntBASIC4.85□□□□□ -1.63
NOD1Q9Y239 AL589740.1-204ENST00000634677 630 ntTSL 4 BASIC4.85□□□□□ -1.63
NOD1Q9Y239 SRP72P2-201ENST00000344851 1979 ntBASIC4.85□□□□□ -1.63
NOD1Q9Y239 PRUNE2-208ENST00000443509 12356 ntAPPRIS ALT2 TSL 5 BASIC4.85□□□□□ -1.63
NOD1Q9Y239 RAB23-201ENST00000317483 2546 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
NOD1Q9Y239 RNF111-212ENST00000561186 4536 ntTSL 2 BASIC4.85□□□□□ -1.63
NOD1Q9Y239 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC4.85□□□□□ -1.63
NOD1Q9Y239 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
NOD1Q9Y239 PREPL-206ENST00000409936 5212 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
NOD1Q9Y239 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC4.84□□□□□ -1.63
NOD1Q9Y239 MIR372-201ENST00000362225 67 ntBASIC4.84□□□□□ -1.63
NOD1Q9Y239 SNORA25.1-201ENST00000362326 128 ntBASIC4.84□□□□□ -1.63
NOD1Q9Y239 Y_RNA.122-201ENST00000363331 96 ntBASIC4.84□□□□□ -1.63
NOD1Q9Y239 SNORA62.3-201ENST00000365110 153 ntBASIC4.84□□□□□ -1.63
NOD1Q9Y239 RNA5SP283-201ENST00000365604 119 ntBASIC4.84□□□□□ -1.63
NOD1Q9Y239 Y_RNA.506-201ENST00000384494 102 ntBASIC4.84□□□□□ -1.63
NOD1Q9Y239 RNU6-125P-201ENST00000384505 107 ntBASIC4.84□□□□□ -1.63
NOD1Q9Y239 MIR554-201ENST00000384874 96 ntBASIC4.84□□□□□ -1.63
NOD1Q9Y239 RN7SKP202-201ENST00000410439 330 ntBASIC4.84□□□□□ -1.63
NOD1Q9Y239 AC009237.10-201ENST00000414112 510 ntBASIC4.84□□□□□ -1.63
NOD1Q9Y239 COX6B1P7-201ENST00000430845 235 ntBASIC4.84□□□□□ -1.63
NOD1Q9Y239 LINC00375-201ENST00000433074 601 ntTSL 5 BASIC4.84□□□□□ -1.63
NOD1Q9Y239 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC4.84□□□□□ -1.63
NOD1Q9Y239 SNRPGP7-201ENST00000469016 106 ntBASIC4.84□□□□□ -1.63
NOD1Q9Y239 RPL26P26-201ENST00000480251 434 ntBASIC4.84□□□□□ -1.63
NOD1Q9Y239 AC113192.1-201ENST00000527270 321 ntTSL 3 BASIC4.84□□□□□ -1.63
NOD1Q9Y239 AC016256.1-201ENST00000547971 354 ntBASIC4.84□□□□□ -1.63
NOD1Q9Y239 UBL5P4-201ENST00000562584 236 ntBASIC4.84□□□□□ -1.63
NOD1Q9Y239 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC4.84□□□□□ -1.63
NOD1Q9Y239 MIR4423-201ENST00000580922 80 ntBASIC4.84□□□□□ -1.63
NOD1Q9Y239 AC011524.1-201ENST00000590167 240 ntTSL 3 BASIC4.84□□□□□ -1.63
NOD1Q9Y239 AC019159.1-201ENST00000605094 187 ntBASIC4.84□□□□□ -1.63
NOD1Q9Y239 C2orf91-203ENST00000615044 393 ntAPPRIS ALT2 TSL 5 BASIC4.84□□□□□ -1.63
NOD1Q9Y239 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC4.84□□□□□ -1.63
NOD1Q9Y239 FAM135A-210ENST00000505868 5173 ntTSL 5 BASIC4.84□□□□□ -1.63
NOD1Q9Y239 USP44-201ENST00000258499 4022 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.64
NOD1Q9Y239 NEGR1-201ENST00000306821 5577 ntTSL 1 (best) BASIC4.84□□□□□ -1.64
NOD1Q9Y239 LIMA1-214ENST00000552783 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC4.84□□□□□ -1.64
NOD1Q9Y239 AC004803.1-201ENST00000503602 3207 ntTSL 1 (best) BASIC4.84□□□□□ -1.64
NOD1Q9Y239 ZBBX-202ENST00000392764 2849 ntAPPRIS ALT2 TSL 1 (best) BASIC4.83□□□□□ -1.64
NOD1Q9Y239 NOL8P1-201ENST00000508336 3529 ntBASIC4.83□□□□□ -1.64
NOD1Q9Y239 RNF180-202ENST00000389100 4906 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
NOD1Q9Y239 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
NOD1Q9Y239 RNU6-600P-201ENST00000362524 99 ntBASIC4.83□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 102.2 ms