Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 LINC01533-202ENST00000588694 632 ntTSL 2 BASIC5.06□□□□□ -1.6
LIMD1Q9UGP4 LINC00904-201ENST00000604453 471 ntTSL 2 BASIC5.06□□□□□ -1.6
LIMD1Q9UGP4 MIR6716-201ENST00000613413 80 ntBASIC5.06□□□□□ -1.6
LIMD1Q9UGP4 PLCB4-204ENST00000378501 5833 ntAPPRIS P4 TSL 5 BASIC5.06□□□□□ -1.6
LIMD1Q9UGP4 CD80-201ENST00000264246 2725 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
LIMD1Q9UGP4 TET2-203ENST00000380013 9679 ntAPPRIS P2 TSL 5 BASIC5.06□□□□□ -1.6
LIMD1Q9UGP4 EPHA7-202ENST00000369303 6588 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
LIMD1Q9UGP4 FAM107B-229ENST00000622567 3510 ntAPPRIS P1 TSL 2 BASIC5.06□□□□□ -1.6
LIMD1Q9UGP4 SLC10A7-203ENST00000432059 3747 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
LIMD1Q9UGP4 EEF1A1-210ENST00000610520 3447 ntTSL 5 BASIC5.06□□□□□ -1.6
LIMD1Q9UGP4 FAM46D-202ENST00000538312 3106 ntAPPRIS P1 TSL 2 BASIC5.06□□□□□ -1.6
LIMD1Q9UGP4 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC5.05□□□□□ -1.6
LIMD1Q9UGP4 RGS5-212ENST00000618415 5812 ntTSL 4 BASIC5.05□□□□□ -1.6
LIMD1Q9UGP4 PCDH15-209ENST00000395433 6942 ntTSL 5 BASIC5.05□□□□□ -1.6
LIMD1Q9UGP4 MYO3A-203ENST00000376302 2723 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
LIMD1Q9UGP4 ANKRD30BP1-201ENST00000451052 2186 ntBASIC5.05□□□□□ -1.6
LIMD1Q9UGP4 PSD3-201ENST00000286485 6665 ntAPPRIS P3 TSL 1 (best) BASIC5.05□□□□□ -1.6
LIMD1Q9UGP4 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
LIMD1Q9UGP4 Y_RNA.23-201ENST00000362496 106 ntBASIC5.05□□□□□ -1.6
LIMD1Q9UGP4 RNU1-62P-201ENST00000362599 164 ntBASIC5.05□□□□□ -1.6
LIMD1Q9UGP4 RN7SKP280-201ENST00000364196 304 ntBASIC5.05□□□□□ -1.6
LIMD1Q9UGP4 Y_RNA.357-201ENST00000365487 109 ntBASIC5.05□□□□□ -1.6
LIMD1Q9UGP4 Y_RNA.400-201ENST00000383963 111 ntBASIC5.05□□□□□ -1.6
LIMD1Q9UGP4 RNU6-622P-201ENST00000384272 103 ntBASIC5.05□□□□□ -1.6
LIMD1Q9UGP4 Y_RNA.497-201ENST00000384447 98 ntBASIC5.05□□□□□ -1.6
LIMD1Q9UGP4 RNU2-54P-201ENST00000410299 190 ntBASIC5.05□□□□□ -1.6
LIMD1Q9UGP4 RNU5E-9P-201ENST00000411164 104 ntBASIC5.05□□□□□ -1.6
LIMD1Q9UGP4 AF064858.2-201ENST00000440714 292 ntTSL 3 BASIC5.05□□□□□ -1.6
LIMD1Q9UGP4 SCARNA22-201ENST00000503991 125 ntBASIC5.05□□□□□ -1.6
LIMD1Q9UGP4 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC5.05□□□□□ -1.6
LIMD1Q9UGP4 TBCA-207ENST00000520039 157 ntTSL 3 BASIC5.05□□□□□ -1.6
LIMD1Q9UGP4 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC5.05□□□□□ -1.6
LIMD1Q9UGP4 AC021739.1-201ENST00000559631 174 ntBASIC5.05□□□□□ -1.6
LIMD1Q9UGP4 AC007224.1-201ENST00000564410 144 ntBASIC5.05□□□□□ -1.6
LIMD1Q9UGP4 CYP4A27P-201ENST00000567218 190 ntBASIC5.05□□□□□ -1.6
LIMD1Q9UGP4 MIR3939-201ENST00000582614 106 ntBASIC5.05□□□□□ -1.6
LIMD1Q9UGP4 AC005255.1-201ENST00000593748 216 ntBASIC5.05□□□□□ -1.6
LIMD1Q9UGP4 GMFG-202ENST00000594700 397 ntTSL 2 BASIC5.05□□□□□ -1.6
LIMD1Q9UGP4 SNRPGP20-201ENST00000604477 205 ntBASIC5.05□□□□□ -1.6
LIMD1Q9UGP4 INPP4B-201ENST00000262992 3741 ntAPPRIS P1 TSL 5 BASIC5.05□□□□□ -1.6
LIMD1Q9UGP4 FRYL-209ENST00000506685 1940 ntTSL 5 BASIC5.05□□□□□ -1.6
LIMD1Q9UGP4 MRPL35-202ENST00000337109 3727 ntAPPRIS P4 TSL 1 (best) BASIC5.05□□□□□ -1.6
LIMD1Q9UGP4 LIX1-201ENST00000274382 4026 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
LIMD1Q9UGP4 SCN2A-201ENST00000283256 8660 ntAPPRIS P5 TSL 1 (best) BASIC5.04□□□□□ -1.6
LIMD1Q9UGP4 MAP2-202ENST00000360351 9711 ntAPPRIS P2 TSL 5 BASIC5.04□□□□□ -1.6
LIMD1Q9UGP4 SLC1A3-202ENST00000381918 3652 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
LIMD1Q9UGP4 RPS6KA6-204ENST00000620340 8169 ntTSL 5 BASIC5.04□□□□□ -1.6
LIMD1Q9UGP4 Y_RNA.101-201ENST00000363154 102 ntBASIC5.04□□□□□ -1.6
LIMD1Q9UGP4 RNU6-22P-201ENST00000384355 107 ntBASIC5.04□□□□□ -1.6
LIMD1Q9UGP4 Y_RNA.488-201ENST00000384403 102 ntBASIC5.04□□□□□ -1.6
LIMD1Q9UGP4 RNU6-959P-201ENST00000384671 107 ntBASIC5.04□□□□□ -1.6
LIMD1Q9UGP4 SNORA57.1-201ENST00000391227 145 ntBASIC5.04□□□□□ -1.6
LIMD1Q9UGP4 U3.30-201ENST00000391308 210 ntBASIC5.04□□□□□ -1.6
LIMD1Q9UGP4 RNA5SP475-201ENST00000410568 110 ntBASIC5.04□□□□□ -1.6
LIMD1Q9UGP4 GNG5P5-201ENST00000420444 220 ntBASIC5.04□□□□□ -1.6
LIMD1Q9UGP4 AC109327.1-201ENST00000471666 403 ntBASIC5.04□□□□□ -1.6
LIMD1Q9UGP4 AC022795.1-201ENST00000473808 480 ntBASIC5.04□□□□□ -1.6
LIMD1Q9UGP4 RPL30P12-201ENST00000474666 353 ntBASIC5.04□□□□□ -1.6
LIMD1Q9UGP4 HMGB3P3-201ENST00000510526 400 ntBASIC5.04□□□□□ -1.6
LIMD1Q9UGP4 RNU6-581P-201ENST00000516214 105 ntBASIC5.04□□□□□ -1.6
LIMD1Q9UGP4 RGS5-208ENST00000530507 851 ntAPPRIS ALT1 TSL 3 BASIC5.04□□□□□ -1.6
LIMD1Q9UGP4 AC107958.3-201ENST00000553410 431 ntTSL 3 BASIC5.04□□□□□ -1.6
LIMD1Q9UGP4 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC5.04□□□□□ -1.6
LIMD1Q9UGP4 AC009127.3-201ENST00000570531 403 ntBASIC5.04□□□□□ -1.6
LIMD1Q9UGP4 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC5.04□□□□□ -1.6
LIMD1Q9UGP4 AC022726.1-201ENST00000587475 207 ntBASIC5.04□□□□□ -1.6
LIMD1Q9UGP4 AC006380.1-201ENST00000603598 186 ntBASIC5.04□□□□□ -1.6
LIMD1Q9UGP4 MIR6839-201ENST00000620425 113 ntBASIC5.04□□□□□ -1.6
LIMD1Q9UGP4 AC092628.2-201ENST00000622492 339 ntBASIC5.04□□□□□ -1.6
LIMD1Q9UGP4 AC091932.3-201ENST00000624223 323 ntBASIC5.04□□□□□ -1.6
LIMD1Q9UGP4 AC011944.2-201ENST00000624440 683 ntBASIC5.04□□□□□ -1.6
LIMD1Q9UGP4 CCDC25-212ENST00000640944 261 ntTSL 5 BASIC5.04□□□□□ -1.6
LIMD1Q9UGP4 CFAP47-203ENST00000378653 9943 ntAPPRIS P2 TSL 5 BASIC5.04□□□□□ -1.6
LIMD1Q9UGP4 ZNF28-204ENST00000457749 4556 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
LIMD1Q9UGP4 ZNF117-201ENST00000282869 9080 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
LIMD1Q9UGP4 IREB2-201ENST00000258886 6354 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
LIMD1Q9UGP4 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC5.04□□□□□ -1.6
LIMD1Q9UGP4 CENPI-201ENST00000372926 2375 ntAPPRIS ALT2 TSL 5 BASIC5.04□□□□□ -1.6
LIMD1Q9UGP4 GPATCH2L-214ENST00000621494 12396 ntAPPRIS P1 TSL 2 BASIC5.04□□□□□ -1.6
LIMD1Q9UGP4 KLHL4-202ENST00000373119 5818 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
LIMD1Q9UGP4 MFN1-201ENST00000263969 2754 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
LIMD1Q9UGP4 Y_RNA.238-201ENST00000364441 102 ntBASIC5.03□□□□□ -1.6
LIMD1Q9UGP4 RNA5SP167-201ENST00000365461 116 ntBASIC5.03□□□□□ -1.6
LIMD1Q9UGP4 RNU4-17P-201ENST00000365598 141 ntBASIC5.03□□□□□ -1.6
LIMD1Q9UGP4 MIR23B-201ENST00000384832 97 ntBASIC5.03□□□□□ -1.6
LIMD1Q9UGP4 AC099548.1-201ENST00000421443 426 ntBASIC5.03□□□□□ -1.6
LIMD1Q9UGP4 BTF3P11-201ENST00000426582 477 ntBASIC5.03□□□□□ -1.6
LIMD1Q9UGP4 AC011276.1-201ENST00000469688 323 ntBASIC5.03□□□□□ -1.6
LIMD1Q9UGP4 AC023424.1-201ENST00000496058 459 ntBASIC5.03□□□□□ -1.6
LIMD1Q9UGP4 RNU6-313P-201ENST00000516317 112 ntBASIC5.03□□□□□ -1.6
LIMD1Q9UGP4 AC133555.2-201ENST00000550213 292 ntBASIC5.03□□□□□ -1.6
LIMD1Q9UGP4 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC5.03□□□□□ -1.6
LIMD1Q9UGP4 RPL7P50-201ENST00000600588 727 ntBASIC5.03□□□□□ -1.6
LIMD1Q9UGP4 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC5.03□□□□□ -1.6
LIMD1Q9UGP4 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC5.03□□□□□ -1.6
LIMD1Q9UGP4 AC091895.1-201ENST00000624494 256 ntBASIC5.03□□□□□ -1.6
LIMD1Q9UGP4 MIR3674-201ENST00000636576 68 ntBASIC5.03□□□□□ -1.6
LIMD1Q9UGP4 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC5.03□□□□□ -1.6
LIMD1Q9UGP4 APAF1-209ENST00000550527 6581 ntAPPRIS ALT1 TSL 1 (best) BASIC5.03□□□□□ -1.6
LIMD1Q9UGP4 WDR5B-201ENST00000330689 3720 ntAPPRIS P1 BASIC5.03□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 130.3 ms