Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 AC139453.3-201ENST00000493276 369 ntBASIC3.38□□□□□ -1.87
VSX1Q9NZR4 PTP4A1P4-201ENST00000512479 322 ntBASIC3.38□□□□□ -1.87
VSX1Q9NZR4 RNA5SP208-201ENST00000516156 78 ntBASIC3.38□□□□□ -1.87
VSX1Q9NZR4 LINC02277-201ENST00000553386 453 ntTSL 2 BASIC3.38□□□□□ -1.87
VSX1Q9NZR4 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC3.38□□□□□ -1.87
VSX1Q9NZR4 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC3.38□□□□□ -1.87
VSX1Q9NZR4 SNORA51-201ENST00000606420 132 ntBASIC3.38□□□□□ -1.87
VSX1Q9NZR4 AC006157.1-201ENST00000611750 366 ntBASIC3.38□□□□□ -1.87
VSX1Q9NZR4 AL110115.1-201ENST00000614396 364 ntBASIC3.38□□□□□ -1.87
VSX1Q9NZR4 RNA5SP196-201ENST00000625967 102 ntBASIC3.38□□□□□ -1.87
VSX1Q9NZR4 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC3.38□□□□□ -1.87
VSX1Q9NZR4 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC3.38□□□□□ -1.87
VSX1Q9NZR4 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
VSX1Q9NZR4 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC3.38□□□□□ -1.87
VSX1Q9NZR4 AC007656.2-201ENST00000624902 4547 ntBASIC3.38□□□□□ -1.87
VSX1Q9NZR4 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC3.38□□□□□ -1.87
VSX1Q9NZR4 ZNF807-201ENST00000328088 1707 ntBASIC3.38□□□□□ -1.87
VSX1Q9NZR4 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
VSX1Q9NZR4 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC3.38□□□□□ -1.87
VSX1Q9NZR4 MFSD8-236ENST00000641509 4050 ntBASIC3.38□□□□□ -1.87
VSX1Q9NZR4 CPXCR1-202ENST00000373111 1577 ntAPPRIS P1 TSL 2 BASIC3.38□□□□□ -1.87
VSX1Q9NZR4 AC110597.3-202ENST00000583493 3289 ntTSL 5 BASIC3.38□□□□□ -1.87
VSX1Q9NZR4 LINC00648-202ENST00000555985 2885 ntTSL 2 BASIC3.37□□□□□ -1.87
VSX1Q9NZR4 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
VSX1Q9NZR4 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
VSX1Q9NZR4 FTLP6-201ENST00000355274 422 ntBASIC3.37□□□□□ -1.87
VSX1Q9NZR4 Y_RNA.39-201ENST00000362620 98 ntBASIC3.37□□□□□ -1.87
VSX1Q9NZR4 RNU5E-7P-201ENST00000365290 117 ntBASIC3.37□□□□□ -1.87
VSX1Q9NZR4 RNA5SP283-201ENST00000365604 119 ntBASIC3.37□□□□□ -1.87
VSX1Q9NZR4 RNU6-213P-201ENST00000384051 104 ntBASIC3.37□□□□□ -1.87
VSX1Q9NZR4 RNY1P14-201ENST00000384426 108 ntBASIC3.37□□□□□ -1.87
VSX1Q9NZR4 RNU1-13P-201ENST00000384499 162 ntBASIC3.37□□□□□ -1.87
VSX1Q9NZR4 SNORA1.3-201ENST00000384676 136 ntBASIC3.37□□□□□ -1.87
VSX1Q9NZR4 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC3.37□□□□□ -1.87
VSX1Q9NZR4 U3.37-201ENST00000408528 213 ntBASIC3.37□□□□□ -1.87
VSX1Q9NZR4 AC096664.2-201ENST00000411843 406 ntBASIC3.37□□□□□ -1.87
VSX1Q9NZR4 NDUFS5P4-201ENST00000412983 318 ntBASIC3.37□□□□□ -1.87
VSX1Q9NZR4 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC3.37□□□□□ -1.87
VSX1Q9NZR4 HMGN2P30-201ENST00000423237 256 ntBASIC3.37□□□□□ -1.87
VSX1Q9NZR4 AL358176.2-201ENST00000425769 204 ntBASIC3.37□□□□□ -1.87
VSX1Q9NZR4 AC093151.1-201ENST00000427711 313 ntBASIC3.37□□□□□ -1.87
VSX1Q9NZR4 SNRPEP4-201ENST00000435815 279 ntBASIC3.37□□□□□ -1.87
VSX1Q9NZR4 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC3.37□□□□□ -1.87
VSX1Q9NZR4 AL162384.1-201ENST00000437881 499 ntTSL 2 BASIC3.37□□□□□ -1.87
VSX1Q9NZR4 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC3.37□□□□□ -1.87
VSX1Q9NZR4 DCLRE1CP1-201ENST00000454630 470 ntBASIC3.37□□□□□ -1.87
VSX1Q9NZR4 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC3.37□□□□□ -1.87
VSX1Q9NZR4 FTH1P2-201ENST00000466086 412 ntBASIC3.37□□□□□ -1.87
VSX1Q9NZR4 RN7SKP83-201ENST00000516512 178 ntBASIC3.37□□□□□ -1.87
VSX1Q9NZR4 RNU7-4P-201ENST00000516961 62 ntBASIC3.37□□□□□ -1.87
VSX1Q9NZR4 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC3.37□□□□□ -1.87
VSX1Q9NZR4 OR8R1P-201ENST00000543943 764 ntBASIC3.37□□□□□ -1.87
VSX1Q9NZR4 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC3.37□□□□□ -1.87
VSX1Q9NZR4 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC3.37□□□□□ -1.87
VSX1Q9NZR4 AC120057.2-201ENST00000571520 271 ntBASIC3.37□□□□□ -1.87
VSX1Q9NZR4 MIR4680-201ENST00000580906 66 ntBASIC3.37□□□□□ -1.87
VSX1Q9NZR4 SNORA62.6-201ENST00000606322 83 ntBASIC3.37□□□□□ -1.87
VSX1Q9NZR4 U4.7-201ENST00000638126 106 ntBASIC3.37□□□□□ -1.87
VSX1Q9NZR4 CYSLTR2-201ENST00000282018 4672 ntAPPRIS P1 BASIC3.37□□□□□ -1.87
VSX1Q9NZR4 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
VSX1Q9NZR4 AL079305.1-201ENST00000623159 3008 ntBASIC3.36□□□□□ -1.87
VSX1Q9NZR4 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC3.36□□□□□ -1.87
VSX1Q9NZR4 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
VSX1Q9NZR4 ZNF99-202ENST00000596209 7817 ntTSL 5 BASIC3.36□□□□□ -1.87
VSX1Q9NZR4 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC3.36□□□□□ -1.87
VSX1Q9NZR4 Y_RNA.144-201ENST00000363521 113 ntBASIC3.36□□□□□ -1.87
VSX1Q9NZR4 RNU6-1059P-201ENST00000363752 98 ntBASIC3.36□□□□□ -1.87
VSX1Q9NZR4 RNU6-827P-201ENST00000365553 106 ntBASIC3.36□□□□□ -1.87
VSX1Q9NZR4 RNU6-72P-201ENST00000384285 79 ntBASIC3.36□□□□□ -1.87
VSX1Q9NZR4 Y_RNA.473-201ENST00000384333 102 ntBASIC3.36□□□□□ -1.87
VSX1Q9NZR4 RNU6-463P-201ENST00000384340 107 ntBASIC3.36□□□□□ -1.87
VSX1Q9NZR4 SNORA48.8-201ENST00000391324 134 ntBASIC3.36□□□□□ -1.87
VSX1Q9NZR4 RPL21P17-201ENST00000397467 475 ntBASIC3.36□□□□□ -1.87
VSX1Q9NZR4 AC243428.1-201ENST00000421099 264 ntBASIC3.36□□□□□ -1.87
VSX1Q9NZR4 TAB3-AS1-201ENST00000428263 245 ntTSL 5 BASIC3.36□□□□□ -1.87
VSX1Q9NZR4 HIGD1AP2-201ENST00000446367 280 ntBASIC3.36□□□□□ -1.87
VSX1Q9NZR4 NUTF2P7-201ENST00000453086 375 ntBASIC3.36□□□□□ -1.87
VSX1Q9NZR4 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC3.36□□□□□ -1.87
VSX1Q9NZR4 AC128713.1-201ENST00000471495 306 ntBASIC3.36□□□□□ -1.87
VSX1Q9NZR4 AP002884.2-201ENST00000471647 395 ntBASIC3.36□□□□□ -1.87
VSX1Q9NZR4 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC3.36□□□□□ -1.87
VSX1Q9NZR4 AK3P2-201ENST00000507976 429 ntBASIC3.36□□□□□ -1.87
VSX1Q9NZR4 AP005902.1-201ENST00000521358 186 ntBASIC3.36□□□□□ -1.87
VSX1Q9NZR4 AP004607.1-201ENST00000524456 203 ntBASIC3.36□□□□□ -1.87
VSX1Q9NZR4 AC011602.1-201ENST00000546484 331 ntBASIC3.36□□□□□ -1.87
VSX1Q9NZR4 PARP1P2-201ENST00000556806 195 ntBASIC3.36□□□□□ -1.87
VSX1Q9NZR4 TMEM212-205ENST00000619900 585 ntAPPRIS P1 TSL 3 BASIC3.36□□□□□ -1.87
VSX1Q9NZR4 U2.21-201ENST00000637295 81 ntBASIC3.36□□□□□ -1.87
VSX1Q9NZR4 MFN1-201ENST00000263969 2754 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
VSX1Q9NZR4 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC3.36□□□□□ -1.87
VSX1Q9NZR4 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC3.36□□□□□ -1.87
VSX1Q9NZR4 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC3.36□□□□□ -1.87
VSX1Q9NZR4 MTND5P7-201ENST00000413558 1798 ntBASIC3.35□□□□□ -1.87
VSX1Q9NZR4 TLR10-206ENST00000508334 2616 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
VSX1Q9NZR4 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC3.35□□□□□ -1.87
VSX1Q9NZR4 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC3.35□□□□□ -1.87
VSX1Q9NZR4 AC005592.1-201ENST00000566527 1640 ntBASIC3.35□□□□□ -1.87
VSX1Q9NZR4 SPRR2C-201ENST00000290702 219 ntBASIC3.35□□□□□ -1.87
VSX1Q9NZR4 Y_RNA.133-201ENST00000363428 110 ntBASIC3.35□□□□□ -1.87
VSX1Q9NZR4 RNU6-1035P-201ENST00000384477 107 ntBASIC3.35□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 95.1 ms