Protein–RNA interactions for Protein: Q9H4Z3

PCIF1, Phosphorylated CTD-interacting factor 1, humanhuman

Predictions only

Length 704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCIF1Q9H4Z3 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC3.83□□□□□ -1.8
PCIF1Q9H4Z3 BX276092.3-201ENST00000424182 230 ntBASIC3.83□□□□□ -1.8
PCIF1Q9H4Z3 HMGN2P31-201ENST00000432430 273 ntBASIC3.83□□□□□ -1.8
PCIF1Q9H4Z3 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
PCIF1Q9H4Z3 RNU6-1037P-201ENST00000459571 107 ntBASIC3.83□□□□□ -1.8
PCIF1Q9H4Z3 AC008571.1-201ENST00000467232 300 ntBASIC3.83□□□□□ -1.8
PCIF1Q9H4Z3 RPL21P129-201ENST00000491732 478 ntBASIC3.83□□□□□ -1.8
PCIF1Q9H4Z3 RNU1-103P-201ENST00000516502 125 ntBASIC3.83□□□□□ -1.8
PCIF1Q9H4Z3 RNU6-1183P-201ENST00000517054 60 ntBASIC3.83□□□□□ -1.8
PCIF1Q9H4Z3 RNU6-1137P-201ENST00000517073 99 ntBASIC3.83□□□□□ -1.8
PCIF1Q9H4Z3 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC3.83□□□□□ -1.8
PCIF1Q9H4Z3 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC3.83□□□□□ -1.8
PCIF1Q9H4Z3 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC3.83□□□□□ -1.8
PCIF1Q9H4Z3 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC3.83□□□□□ -1.8
PCIF1Q9H4Z3 AC083806.3-201ENST00000614016 455 ntBASIC3.83□□□□□ -1.8
PCIF1Q9H4Z3 UBE2E2-207ENST00000628311 267 ntTSL 5 BASIC3.83□□□□□ -1.8
PCIF1Q9H4Z3 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC3.83□□□□□ -1.8
PCIF1Q9H4Z3 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC3.83□□□□□ -1.8
PCIF1Q9H4Z3 MCF2-203ENST00000370576 3688 ntAPPRIS P3 TSL 1 (best) BASIC3.83□□□□□ -1.8
PCIF1Q9H4Z3 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC3.82□□□□□ -1.8
PCIF1Q9H4Z3 GPRC6A-202ENST00000368549 2622 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
PCIF1Q9H4Z3 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC3.82□□□□□ -1.8
PCIF1Q9H4Z3 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
PCIF1Q9H4Z3 HSPA8P1-201ENST00000425843 1833 ntBASIC3.82□□□□□ -1.8
PCIF1Q9H4Z3 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC3.82□□□□□ -1.8
PCIF1Q9H4Z3 RNU6-490P-201ENST00000362985 107 ntBASIC3.82□□□□□ -1.8
PCIF1Q9H4Z3 RNU6-72P-201ENST00000384285 79 ntBASIC3.82□□□□□ -1.8
PCIF1Q9H4Z3 RNU6-933P-201ENST00000384424 107 ntBASIC3.82□□□□□ -1.8
PCIF1Q9H4Z3 RNU6-658P-201ENST00000384606 106 ntBASIC3.82□□□□□ -1.8
PCIF1Q9H4Z3 SNORA41-201ENST00000384675 132 ntBASIC3.82□□□□□ -1.8
PCIF1Q9H4Z3 RNU2-37P-201ENST00000410695 177 ntBASIC3.82□□□□□ -1.8
PCIF1Q9H4Z3 AC002075.2-201ENST00000425207 252 ntBASIC3.82□□□□□ -1.8
PCIF1Q9H4Z3 CYCSP4-201ENST00000429682 331 ntBASIC3.82□□□□□ -1.8
PCIF1Q9H4Z3 RPS15AP10-201ENST00000432472 382 ntBASIC3.82□□□□□ -1.8
PCIF1Q9H4Z3 AL160004.2-201ENST00000432935 350 ntBASIC3.82□□□□□ -1.8
PCIF1Q9H4Z3 RPL23AP50-201ENST00000434149 455 ntBASIC3.82□□□□□ -1.8
PCIF1Q9H4Z3 RPS29P31-201ENST00000446147 164 ntBASIC3.82□□□□□ -1.8
PCIF1Q9H4Z3 HMGN2P13-201ENST00000476476 274 ntBASIC3.82□□□□□ -1.8
PCIF1Q9H4Z3 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC3.82□□□□□ -1.8
PCIF1Q9H4Z3 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC3.82□□□□□ -1.8
PCIF1Q9H4Z3 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC3.82□□□□□ -1.8
PCIF1Q9H4Z3 RNU6-1046P-201ENST00000516538 107 ntBASIC3.82□□□□□ -1.8
PCIF1Q9H4Z3 RNU6-307P-201ENST00000516743 106 ntBASIC3.82□□□□□ -1.8
PCIF1Q9H4Z3 CLEC7A-212ENST00000533022 625 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
PCIF1Q9H4Z3 AC009137.1-201ENST00000562790 260 ntTSL 3 BASIC3.82□□□□□ -1.8
PCIF1Q9H4Z3 MIR4782-201ENST00000577987 79 ntBASIC3.82□□□□□ -1.8
PCIF1Q9H4Z3 AC005899.2-201ENST00000584353 90 ntBASIC3.82□□□□□ -1.8
PCIF1Q9H4Z3 AC008737.2-201ENST00000599446 118 ntBASIC3.82□□□□□ -1.8
PCIF1Q9H4Z3 AL355598.1-201ENST00000604169 202 ntBASIC3.82□□□□□ -1.8
PCIF1Q9H4Z3 AP001836.1-201ENST00000604675 523 ntBASIC3.82□□□□□ -1.8
PCIF1Q9H4Z3 AL161912.2-201ENST00000565707 3007 ntBASIC3.81□□□□□ -1.8
PCIF1Q9H4Z3 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC3.81□□□□□ -1.8
PCIF1Q9H4Z3 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC3.81□□□□□ -1.8
PCIF1Q9H4Z3 ZNF807-201ENST00000328088 1707 ntBASIC3.81□□□□□ -1.8
PCIF1Q9H4Z3 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC3.81□□□□□ -1.8
PCIF1Q9H4Z3 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
PCIF1Q9H4Z3 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC3.81□□□□□ -1.8
PCIF1Q9H4Z3 ADGRG2-206ENST00000360279 4702 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
PCIF1Q9H4Z3 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC3.81□□□□□ -1.8
PCIF1Q9H4Z3 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC3.81□□□□□ -1.8
PCIF1Q9H4Z3 RPL9P7-201ENST00000330965 580 ntBASIC3.81□□□□□ -1.8
PCIF1Q9H4Z3 RNU6-428P-201ENST00000362942 107 ntBASIC3.81□□□□□ -1.8
PCIF1Q9H4Z3 RNU6-596P-201ENST00000365395 98 ntBASIC3.81□□□□□ -1.8
PCIF1Q9H4Z3 RNY1P14-201ENST00000384426 108 ntBASIC3.81□□□□□ -1.8
PCIF1Q9H4Z3 MIR218-2-201ENST00000385006 110 ntBASIC3.81□□□□□ -1.8
PCIF1Q9H4Z3 RNU6-1106P-201ENST00000390845 107 ntBASIC3.81□□□□□ -1.8
PCIF1Q9H4Z3 SNORA48.7-201ENST00000391302 135 ntBASIC3.81□□□□□ -1.8
PCIF1Q9H4Z3 Z98941.1-201ENST00000407764 100 ntBASIC3.81□□□□□ -1.8
PCIF1Q9H4Z3 TMEM167AP1-201ENST00000423409 219 ntBASIC3.81□□□□□ -1.8
PCIF1Q9H4Z3 AC008267.5-201ENST00000424928 265 ntBASIC3.81□□□□□ -1.8
PCIF1Q9H4Z3 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC3.81□□□□□ -1.8
PCIF1Q9H4Z3 AL513043.1-201ENST00000439124 535 ntBASIC3.81□□□□□ -1.8
PCIF1Q9H4Z3 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC3.81□□□□□ -1.8
PCIF1Q9H4Z3 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC3.81□□□□□ -1.8
PCIF1Q9H4Z3 GSTA11P-201ENST00000452866 669 ntBASIC3.81□□□□□ -1.8
PCIF1Q9H4Z3 AC013470.1-201ENST00000453438 462 ntBASIC3.81□□□□□ -1.8
PCIF1Q9H4Z3 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC3.81□□□□□ -1.8
PCIF1Q9H4Z3 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC3.81□□□□□ -1.8
PCIF1Q9H4Z3 RPL9P9-202ENST00000466501 579 ntBASIC3.81□□□□□ -1.8
PCIF1Q9H4Z3 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC3.81□□□□□ -1.8
PCIF1Q9H4Z3 ACA59.1-201ENST00000515966 143 ntBASIC3.81□□□□□ -1.8
PCIF1Q9H4Z3 AC009623.2-201ENST00000522524 465 ntTSL 3 BASIC3.81□□□□□ -1.8
PCIF1Q9H4Z3 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC3.81□□□□□ -1.8
PCIF1Q9H4Z3 SYF2P1-201ENST00000550658 413 ntBASIC3.81□□□□□ -1.8
PCIF1Q9H4Z3 AL133383.1-201ENST00000569292 901 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
PCIF1Q9H4Z3 MIR4680-201ENST00000580906 66 ntBASIC3.81□□□□□ -1.8
PCIF1Q9H4Z3 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC3.81□□□□□ -1.8
PCIF1Q9H4Z3 AC136443.5-201ENST00000603741 370 ntBASIC3.81□□□□□ -1.8
PCIF1Q9H4Z3 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC3.81□□□□□ -1.8
PCIF1Q9H4Z3 SNORA51-201ENST00000606420 132 ntBASIC3.81□□□□□ -1.8
PCIF1Q9H4Z3 AC022149.2-201ENST00000621061 203 ntBASIC3.81□□□□□ -1.8
PCIF1Q9H4Z3 AC091925.1-201ENST00000623204 462 ntBASIC3.81□□□□□ -1.8
PCIF1Q9H4Z3 AC048347.1-201ENST00000624621 427 ntBASIC3.81□□□□□ -1.8
PCIF1Q9H4Z3 SLC16A10-201ENST00000368850 10051 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
PCIF1Q9H4Z3 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC3.81□□□□□ -1.8
PCIF1Q9H4Z3 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC3.81□□□□□ -1.8
PCIF1Q9H4Z3 KIAA1841-202ENST00000356719 2149 ntTSL 5 BASIC3.8□□□□□ -1.8
PCIF1Q9H4Z3 PSMA5-201ENST00000271308 3729 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
PCIF1Q9H4Z3 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
PCIF1Q9H4Z3 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC3.8□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 120.2 ms