Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 AC026464.5-201ENST00000562497 722 ntBASIC3.7□□□□□ -1.82
NUP88Q99567 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC3.7□□□□□ -1.82
NUP88Q99567 MIR5692C1-201ENST00000585309 91 ntBASIC3.7□□□□□ -1.82
NUP88Q99567 OR1M4P-201ENST00000589199 287 ntBASIC3.7□□□□□ -1.82
NUP88Q99567 AC135507.2-201ENST00000612443 309 ntBASIC3.7□□□□□ -1.82
NUP88Q99567 AC004852.3-201ENST00000614131 326 ntBASIC3.7□□□□□ -1.82
NUP88Q99567 AC104260.1-201ENST00000616660 539 ntBASIC3.7□□□□□ -1.82
NUP88Q99567 AC022306.2-201ENST00000617563 647 ntBASIC3.7□□□□□ -1.82
NUP88Q99567 XIST_intron.1-201ENST00000619444 68 ntBASIC3.7□□□□□ -1.82
NUP88Q99567 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC3.7□□□□□ -1.82
NUP88Q99567 AC233263.6-201ENST00000631132 1963 ntBASIC3.7□□□□□ -1.82
NUP88Q99567 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
NUP88Q99567 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC3.7□□□□□ -1.82
NUP88Q99567 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
NUP88Q99567 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC3.7□□□□□ -1.82
NUP88Q99567 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
NUP88Q99567 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
NUP88Q99567 AC138393.1-203ENST00000327086 343 ntBASIC3.69□□□□□ -1.82
NUP88Q99567 U3.12-201ENST00000364498 214 ntBASIC3.69□□□□□ -1.82
NUP88Q99567 RNU6-384P-201ENST00000364900 104 ntBASIC3.69□□□□□ -1.82
NUP88Q99567 RNU6-898P-201ENST00000365627 104 ntBASIC3.69□□□□□ -1.82
NUP88Q99567 SNORA7.4-201ENST00000384249 137 ntBASIC3.69□□□□□ -1.82
NUP88Q99567 MTND3P8-201ENST00000412909 339 ntBASIC3.69□□□□□ -1.82
NUP88Q99567 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC3.69□□□□□ -1.82
NUP88Q99567 AL109947.1-201ENST00000423747 382 ntTSL 2 BASIC3.69□□□□□ -1.82
NUP88Q99567 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC3.69□□□□□ -1.82
NUP88Q99567 AL359771.1-201ENST00000441809 379 ntTSL 5 BASIC3.69□□□□□ -1.82
NUP88Q99567 AC093019.1-201ENST00000443135 252 ntBASIC3.69□□□□□ -1.82
NUP88Q99567 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC3.69□□□□□ -1.82
NUP88Q99567 AP002884.2-201ENST00000471647 395 ntBASIC3.69□□□□□ -1.82
NUP88Q99567 AC091951.2-201ENST00000500762 203 ntBASIC3.69□□□□□ -1.82
NUP88Q99567 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC3.69□□□□□ -1.82
NUP88Q99567 RNU6-1332P-201ENST00000516666 104 ntBASIC3.69□□□□□ -1.82
NUP88Q99567 RNU7-30P-201ENST00000516835 62 ntBASIC3.69□□□□□ -1.82
NUP88Q99567 SNORA25.17-201ENST00000517184 124 ntBASIC3.69□□□□□ -1.82
NUP88Q99567 AC087854.1-201ENST00000519706 414 ntBASIC3.69□□□□□ -1.82
NUP88Q99567 AC025423.5-201ENST00000550230 219 ntBASIC3.69□□□□□ -1.82
NUP88Q99567 EIF4BP1-201ENST00000554881 351 ntBASIC3.69□□□□□ -1.82
NUP88Q99567 MIR5047-201ENST00000579212 100 ntBASIC3.69□□□□□ -1.82
NUP88Q99567 MIR4742-201ENST00000581069 85 ntBASIC3.69□□□□□ -1.82
NUP88Q99567 AC243960.4-201ENST00000600532 288 ntBASIC3.69□□□□□ -1.82
NUP88Q99567 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC3.69□□□□□ -1.82
NUP88Q99567 uc_338.5-201ENST00000611839 155 ntBASIC3.69□□□□□ -1.82
NUP88Q99567 MIR3199-2-201ENST00000636243 86 ntBASIC3.69□□□□□ -1.82
NUP88Q99567 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC3.69□□□□□ -1.82
NUP88Q99567 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC3.69□□□□□ -1.82
NUP88Q99567 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC3.68□□□□□ -1.82
NUP88Q99567 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC3.68□□□□□ -1.82
NUP88Q99567 GSTA3-201ENST00000211122 902 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
NUP88Q99567 RNA5SP383-201ENST00000362934 120 ntBASIC3.68□□□□□ -1.82
NUP88Q99567 RNU6-805P-201ENST00000365643 106 ntBASIC3.68□□□□□ -1.82
NUP88Q99567 SNORA54-201ENST00000384281 123 ntBASIC3.68□□□□□ -1.82
NUP88Q99567 RAP1BP3-201ENST00000407180 549 ntBASIC3.68□□□□□ -1.82
NUP88Q99567 RN7SKP32-201ENST00000410167 303 ntBASIC3.68□□□□□ -1.82
NUP88Q99567 MTCO3P46-201ENST00000425787 232 ntBASIC3.68□□□□□ -1.82
NUP88Q99567 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC3.68□□□□□ -1.82
NUP88Q99567 CST9LP2-201ENST00000437612 320 ntBASIC3.68□□□□□ -1.82
NUP88Q99567 HIGD1AP11-201ENST00000438361 280 ntBASIC3.68□□□□□ -1.82
NUP88Q99567 AC125238.1-201ENST00000448842 249 ntBASIC3.68□□□□□ -1.82
NUP88Q99567 AC233279.1-201ENST00000455300 423 ntBASIC3.68□□□□□ -1.82
NUP88Q99567 RNU7-138P-201ENST00000459479 64 ntBASIC3.68□□□□□ -1.82
NUP88Q99567 AC104472.2-201ENST00000469035 601 ntBASIC3.68□□□□□ -1.82
NUP88Q99567 RNU6-1069P-201ENST00000516612 133 ntBASIC3.68□□□□□ -1.82
NUP88Q99567 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC3.68□□□□□ -1.82
NUP88Q99567 CYCSP39-201ENST00000565821 309 ntBASIC3.68□□□□□ -1.82
NUP88Q99567 AC006386.2-201ENST00000624491 75 ntBASIC3.68□□□□□ -1.82
NUP88Q99567 AC012005.1-201ENST00000624575 75 ntBASIC3.68□□□□□ -1.82
NUP88Q99567 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
NUP88Q99567 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC3.68□□□□□ -1.82
NUP88Q99567 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC3.68□□□□□ -1.82
NUP88Q99567 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC3.68□□□□□ -1.82
NUP88Q99567 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
NUP88Q99567 AC091152.2-201ENST00000591628 2569 ntBASIC3.67□□□□□ -1.82
NUP88Q99567 AC110491.1-201ENST00000562191 2010 ntBASIC3.67□□□□□ -1.82
NUP88Q99567 RNU6-37P-201ENST00000362692 107 ntBASIC3.67□□□□□ -1.82
NUP88Q99567 RNU6-254P-201ENST00000363377 107 ntBASIC3.67□□□□□ -1.82
NUP88Q99567 SNORD56.3-201ENST00000363507 71 ntBASIC3.67□□□□□ -1.82
NUP88Q99567 RNU6-11P-201ENST00000364234 107 ntBASIC3.67□□□□□ -1.82
NUP88Q99567 RNU6-7-201ENST00000364784 107 ntBASIC3.67□□□□□ -1.82
NUP88Q99567 RNU6-8-201ENST00000365467 107 ntBASIC3.67□□□□□ -1.82
NUP88Q99567 RNU6-25P-201ENST00000383873 107 ntBASIC3.67□□□□□ -1.82
NUP88Q99567 RNU6-1-201ENST00000383898 107 ntBASIC3.67□□□□□ -1.82
NUP88Q99567 RNU6-48P-201ENST00000384161 107 ntBASIC3.67□□□□□ -1.82
NUP88Q99567 RNU6-36P-201ENST00000384172 107 ntBASIC3.67□□□□□ -1.82
NUP88Q99567 RNU6-4P-201ENST00000384205 107 ntBASIC3.67□□□□□ -1.82
NUP88Q99567 RNU6-5P-201ENST00000384238 107 ntBASIC3.67□□□□□ -1.82
NUP88Q99567 RNU6-3P-201ENST00000384314 107 ntBASIC3.67□□□□□ -1.82
NUP88Q99567 RNU6-16P-201ENST00000384385 107 ntBASIC3.67□□□□□ -1.82
NUP88Q99567 RNU6-15P-201ENST00000384534 107 ntBASIC3.67□□□□□ -1.82
NUP88Q99567 RNU6-2-201ENST00000384627 107 ntBASIC3.67□□□□□ -1.82
NUP88Q99567 RNU6-29P-201ENST00000384637 107 ntBASIC3.67□□□□□ -1.82
NUP88Q99567 RNU6-9-201ENST00000384776 107 ntBASIC3.67□□□□□ -1.82
NUP88Q99567 RNU6-33P-201ENST00000384793 107 ntBASIC3.67□□□□□ -1.82
NUP88Q99567 AC016831.2-201ENST00000417179 352 ntBASIC3.67□□□□□ -1.82
NUP88Q99567 AL136234.1-201ENST00000437080 349 ntTSL 2 BASIC3.67□□□□□ -1.82
NUP88Q99567 RNU7-66P-201ENST00000459469 62 ntBASIC3.67□□□□□ -1.82
NUP88Q99567 RNU6-329P-201ENST00000459618 107 ntBASIC3.67□□□□□ -1.82
NUP88Q99567 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC3.67□□□□□ -1.82
NUP88Q99567 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC3.67□□□□□ -1.82
NUP88Q99567 RNU6-875P-201ENST00000516488 106 ntBASIC3.67□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 156 ms