Protein–RNA interactions for Protein: Q96PN7

TRERF1, Transcriptional-regulating factor 1, humanhuman

Predictions only

Length 1,200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRERF1Q96PN7 MIR7154-201ENST00000620673 73 ntBASIC4.99□□□□□ -1.61
TRERF1Q96PN7 AC090617.7-201ENST00000623952 126 ntBASIC4.99□□□□□ -1.61
TRERF1Q96PN7 AC107027.3-201ENST00000565095 3473 ntBASIC4.99□□□□□ -1.61
TRERF1Q96PN7 AL451142.2-201ENST00000429076 2090 ntBASIC4.99□□□□□ -1.61
TRERF1Q96PN7 PANK1-202ENST00000322191 2513 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
TRERF1Q96PN7 GBE1-205ENST00000489715 2513 ntAPPRIS ALT2 TSL 2 BASIC4.99□□□□□ -1.61
TRERF1Q96PN7 ZNF480-202ENST00000335090 2722 ntTSL 3 BASIC4.99□□□□□ -1.61
TRERF1Q96PN7 OR2L3-202ENST00000641161 2830 ntAPPRIS P1 BASIC4.99□□□□□ -1.61
TRERF1Q96PN7 USP29-202ENST00000598197 3284 ntAPPRIS P1 BASIC4.99□□□□□ -1.61
TRERF1Q96PN7 LINC01247-201ENST00000448901 4209 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
TRERF1Q96PN7 DDX4-204ENST00000505374 2884 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
TRERF1Q96PN7 GTDC1-202ENST00000344850 2607 ntAPPRIS P1 TSL 5 BASIC4.98□□□□□ -1.61
TRERF1Q96PN7 MAPK10-286ENST00000641208 8747 ntBASIC4.98□□□□□ -1.61
TRERF1Q96PN7 ZZZ3-202ENST00000370801 4328 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
TRERF1Q96PN7 ZNF510-201ENST00000223428 5154 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
TRERF1Q96PN7 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC4.98□□□□□ -1.61
TRERF1Q96PN7 RNU6-1155P-201ENST00000363554 107 ntBASIC4.98□□□□□ -1.61
TRERF1Q96PN7 RNA5SP175-201ENST00000364275 119 ntBASIC4.98□□□□□ -1.61
TRERF1Q96PN7 MIR93-201ENST00000385024 80 ntBASIC4.98□□□□□ -1.61
TRERF1Q96PN7 MIR569-201ENST00000385228 96 ntBASIC4.98□□□□□ -1.61
TRERF1Q96PN7 AL022722.2-201ENST00000402519 180 ntBASIC4.98□□□□□ -1.61
TRERF1Q96PN7 AC118345.1-201ENST00000411785 366 ntTSL 3 BASIC4.98□□□□□ -1.61
TRERF1Q96PN7 ITCH-IT1-201ENST00000418598 208 ntTSL 3 BASIC4.98□□□□□ -1.61
TRERF1Q96PN7 SAGE2P-201ENST00000420011 2126 ntBASIC4.98□□□□□ -1.61
TRERF1Q96PN7 AL157831.1-201ENST00000426134 473 ntBASIC4.98□□□□□ -1.61
TRERF1Q96PN7 SNORA27.4-201ENST00000516650 95 ntBASIC4.98□□□□□ -1.61
TRERF1Q96PN7 RNU7-110P-201ENST00000516891 62 ntBASIC4.98□□□□□ -1.61
TRERF1Q96PN7 RNU6-1315P-201ENST00000517187 99 ntBASIC4.98□□□□□ -1.61
TRERF1Q96PN7 AC100871.2-201ENST00000522005 327 ntTSL 3 BASIC4.98□□□□□ -1.61
TRERF1Q96PN7 ATP5F1P5-201ENST00000526403 760 ntBASIC4.98□□□□□ -1.61
TRERF1Q96PN7 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC4.98□□□□□ -1.61
TRERF1Q96PN7 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC4.98□□□□□ -1.61
TRERF1Q96PN7 VN1R85P-201ENST00000601587 426 ntBASIC4.98□□□□□ -1.61
TRERF1Q96PN7 AL160290.3-201ENST00000604869 165 ntBASIC4.98□□□□□ -1.61
TRERF1Q96PN7 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC4.98□□□□□ -1.61
TRERF1Q96PN7 MIR8059-201ENST00000620427 81 ntBASIC4.98□□□□□ -1.61
TRERF1Q96PN7 RNA5SP196-201ENST00000625967 102 ntBASIC4.98□□□□□ -1.61
TRERF1Q96PN7 PCBP1-AS1-307ENST00000627050 912 ntTSL 5 BASIC4.98□□□□□ -1.61
TRERF1Q96PN7 CAPZA2-215ENST00000639546 129 ntTSL 5 BASIC4.98□□□□□ -1.61
TRERF1Q96PN7 ATG12-208ENST00000509910 4333 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
TRERF1Q96PN7 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC4.98□□□□□ -1.61
TRERF1Q96PN7 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC4.98□□□□□ -1.61
TRERF1Q96PN7 SLAIN2-205ENST00000512093 4219 ntTSL 5 BASIC4.98□□□□□ -1.61
TRERF1Q96PN7 STK31-205ENST00000433467 3085 ntTSL 2 BASIC4.98□□□□□ -1.61
TRERF1Q96PN7 SLC26A7-209ENST00000617078 5094 ntTSL 5 BASIC4.97□□□□□ -1.61
TRERF1Q96PN7 NCAPGP1-201ENST00000505112 1814 ntBASIC4.97□□□□□ -1.61
TRERF1Q96PN7 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC4.97□□□□□ -1.61
TRERF1Q96PN7 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC4.97□□□□□ -1.61
TRERF1Q96PN7 YWHAZ-211ENST00000457309 3007 ntAPPRIS P1 TSL 2 BASIC4.97□□□□□ -1.61
TRERF1Q96PN7 MAP3K19-203ENST00000375845 4369 ntAPPRIS P3 TSL 1 (best) BASIC4.97□□□□□ -1.61
TRERF1Q96PN7 TARID-205ENST00000607033 2960 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
TRERF1Q96PN7 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC4.97□□□□□ -1.61
TRERF1Q96PN7 RNU6-428P-201ENST00000362942 107 ntBASIC4.97□□□□□ -1.61
TRERF1Q96PN7 Y_RNA.218-201ENST00000364218 104 ntBASIC4.97□□□□□ -1.61
TRERF1Q96PN7 BPY2-202ENST00000382585 321 ntAPPRIS P5 TSL 1 (best) BASIC4.97□□□□□ -1.61
TRERF1Q96PN7 RNU1-13P-201ENST00000384499 162 ntBASIC4.97□□□□□ -1.61
TRERF1Q96PN7 RNU6-21P-201ENST00000384710 107 ntBASIC4.97□□□□□ -1.61
TRERF1Q96PN7 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC4.97□□□□□ -1.61
TRERF1Q96PN7 IFNA11P-201ENST00000446352 526 ntBASIC4.97□□□□□ -1.61
TRERF1Q96PN7 AL392086.1-201ENST00000457632 299 ntTSL 3 BASIC4.97□□□□□ -1.61
TRERF1Q96PN7 AK3P2-201ENST00000507976 429 ntBASIC4.97□□□□□ -1.61
TRERF1Q96PN7 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC4.97□□□□□ -1.61
TRERF1Q96PN7 APOOP4-201ENST00000513530 597 ntBASIC4.97□□□□□ -1.61
TRERF1Q96PN7 RNU6-1095P-201ENST00000516148 108 ntBASIC4.97□□□□□ -1.61
TRERF1Q96PN7 RNA5SP471-201ENST00000516971 106 ntBASIC4.97□□□□□ -1.61
TRERF1Q96PN7 RN7SKP272-201ENST00000516988 232 ntBASIC4.97□□□□□ -1.61
TRERF1Q96PN7 SNORA31.22-201ENST00000517204 135 ntBASIC4.97□□□□□ -1.61
TRERF1Q96PN7 AC008694.2-201ENST00000517591 306 ntBASIC4.97□□□□□ -1.61
TRERF1Q96PN7 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
TRERF1Q96PN7 AL161713.1-201ENST00000555538 145 ntBASIC4.97□□□□□ -1.61
TRERF1Q96PN7 MIR4423-201ENST00000580922 80 ntBASIC4.97□□□□□ -1.61
TRERF1Q96PN7 AL359881.1-201ENST00000602916 267 ntBASIC4.97□□□□□ -1.61
TRERF1Q96PN7 BPY2B-204ENST00000615850 321 ntAPPRIS P5 TSL 1 (best) BASIC4.97□□□□□ -1.61
TRERF1Q96PN7 BPY2C-204ENST00000618574 321 ntAPPRIS P5 TSL 1 (best) BASIC4.97□□□□□ -1.61
TRERF1Q96PN7 AC096751.1-201ENST00000515178 2202 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
TRERF1Q96PN7 KCNT2-206ENST00000609185 3622 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
TRERF1Q96PN7 ADGRG4-201ENST00000370652 9820 ntAPPRIS P2 TSL 5 BASIC4.97□□□□□ -1.61
TRERF1Q96PN7 OTOGL-202ENST00000458043 8083 ntAPPRIS P5 TSL 5 BASIC4.97□□□□□ -1.61
TRERF1Q96PN7 ENPP2-202ENST00000259486 3233 ntAPPRIS P3 TSL 1 (best) BASIC4.97□□□□□ -1.61
TRERF1Q96PN7 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC4.96□□□□□ -1.61
TRERF1Q96PN7 AKAP6-201ENST00000280979 15006 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
TRERF1Q96PN7 KCNJ6-201ENST00000609713 19645 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
TRERF1Q96PN7 DST-201ENST00000244364 16742 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
TRERF1Q96PN7 UBE2L2-201ENST00000254302 429 ntBASIC4.96□□□□□ -1.62
TRERF1Q96PN7 RNU6-512P-201ENST00000364438 103 ntBASIC4.96□□□□□ -1.62
TRERF1Q96PN7 AL357075.1-201ENST00000404107 726 ntBASIC4.96□□□□□ -1.62
TRERF1Q96PN7 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC4.96□□□□□ -1.62
TRERF1Q96PN7 LINC00279-201ENST00000413486 473 ntTSL 3 BASIC4.96□□□□□ -1.62
TRERF1Q96PN7 MRPS10P1-201ENST00000448483 130 ntBASIC4.96□□□□□ -1.62
TRERF1Q96PN7 AC007395.1-201ENST00000451333 677 ntBASIC4.96□□□□□ -1.62
TRERF1Q96PN7 LINC01753-201ENST00000458145 631 ntTSL 3 BASIC4.96□□□□□ -1.62
TRERF1Q96PN7 RNU6-1333P-201ENST00000516162 93 ntBASIC4.96□□□□□ -1.62
TRERF1Q96PN7 RNA5SP519-201ENST00000516480 119 ntBASIC4.96□□□□□ -1.62
TRERF1Q96PN7 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC4.96□□□□□ -1.62
TRERF1Q96PN7 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC4.96□□□□□ -1.62
TRERF1Q96PN7 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC4.96□□□□□ -1.62
TRERF1Q96PN7 AC112693.2-201ENST00000556538 232 ntBASIC4.96□□□□□ -1.62
TRERF1Q96PN7 AL157871.3-201ENST00000557231 293 ntBASIC4.96□□□□□ -1.62
TRERF1Q96PN7 MIR1273C-201ENST00000578669 77 ntBASIC4.96□□□□□ -1.62
TRERF1Q96PN7 MIR4458-201ENST00000578872 75 ntBASIC4.96□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 100.2 ms