Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 AL391987.6-201ENST00000305671 199 ntBASIC3.58□□□□□ -1.84
CCDC140Q96MF4 AC126755.2-208ENST00000327792 462 ntBASIC3.58□□□□□ -1.84
CCDC140Q96MF4 AC138969.1-213ENST00000331436 462 ntBASIC3.58□□□□□ -1.84
CCDC140Q96MF4 Y_RNA.16-201ENST00000362421 102 ntBASIC3.58□□□□□ -1.84
CCDC140Q96MF4 MIR3074-201ENST00000384885 81 ntBASIC3.58□□□□□ -1.84
CCDC140Q96MF4 U3.19-201ENST00000390893 196 ntBASIC3.58□□□□□ -1.84
CCDC140Q96MF4 RNU6-750P-201ENST00000390946 107 ntBASIC3.58□□□□□ -1.84
CCDC140Q96MF4 MIR921-201ENST00000401133 56 ntBASIC3.58□□□□□ -1.84
CCDC140Q96MF4 Z98745.1-201ENST00000402553 494 ntBASIC3.58□□□□□ -1.84
CCDC140Q96MF4 STON1-GTF2A1L-204ENST00000405008 3821 ntAPPRIS P1 TSL 5 BASIC3.58□□□□□ -1.84
CCDC140Q96MF4 RNU6-1077P-201ENST00000410506 102 ntBASIC3.58□□□□□ -1.84
CCDC140Q96MF4 Z98949.2-201ENST00000440996 144 ntBASIC3.58□□□□□ -1.84
CCDC140Q96MF4 LINC01150-201ENST00000455671 315 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
CCDC140Q96MF4 RPS29P22-201ENST00000472363 168 ntBASIC3.58□□□□□ -1.84
CCDC140Q96MF4 ATP6V1G1P6-201ENST00000504007 334 ntBASIC3.58□□□□□ -1.84
CCDC140Q96MF4 SNORA31.21-201ENST00000517180 77 ntBASIC3.58□□□□□ -1.84
CCDC140Q96MF4 IGKV1-32-201ENST00000519290 311 ntBASIC3.58□□□□□ -1.84
CCDC140Q96MF4 AC009446.1-202ENST00000521131 473 ntTSL 3 BASIC3.58□□□□□ -1.84
CCDC140Q96MF4 AC115990.1-201ENST00000526957 301 ntBASIC3.58□□□□□ -1.84
CCDC140Q96MF4 AC025281.1-201ENST00000567026 265 ntBASIC3.58□□□□□ -1.84
CCDC140Q96MF4 AC010900.2-201ENST00000604508 210 ntBASIC3.58□□□□□ -1.84
CCDC140Q96MF4 AL137843.1-201ENST00000605078 385 ntBASIC3.58□□□□□ -1.84
CCDC140Q96MF4 MESTIT1_1.1-201ENST00000618871 140 ntBASIC3.58□□□□□ -1.84
CCDC140Q96MF4 U3.53-201ENST00000628922 216 ntBASIC3.58□□□□□ -1.84
CCDC140Q96MF4 Clostridiales-1.2-201ENST00000636724 160 ntBASIC3.58□□□□□ -1.84
CCDC140Q96MF4 STAG2-204ENST00000371157 5991 ntAPPRIS P3 TSL 1 (best) BASIC3.58□□□□□ -1.84
CCDC140Q96MF4 AL133243.3-201ENST00000617415 3004 ntBASIC3.58□□□□□ -1.84
CCDC140Q96MF4 ENPP2-202ENST00000259486 3233 ntAPPRIS P3 TSL 1 (best) BASIC3.58□□□□□ -1.84
CCDC140Q96MF4 ZNF266-203ENST00000588933 3293 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
CCDC140Q96MF4 MRPL50-201ENST00000374865 3332 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
CCDC140Q96MF4 OSBPL6-201ENST00000190611 10513 ntAPPRIS P3 TSL 1 (best) BASIC3.58□□□□□ -1.84
CCDC140Q96MF4 HSPA8P1-201ENST00000425843 1833 ntBASIC3.58□□□□□ -1.84
CCDC140Q96MF4 POLR2B-203ENST00000431623 3666 ntTSL 2 BASIC3.58□□□□□ -1.84
CCDC140Q96MF4 ZNF415-201ENST00000243643 2270 ntAPPRIS P3 TSL 1 (best) BASIC3.58□□□□□ -1.84
CCDC140Q96MF4 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC3.58□□□□□ -1.84
CCDC140Q96MF4 ZNF765-201ENST00000396408 4569 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
CCDC140Q96MF4 OFD1P6Y-202ENST00000451061 2724 ntBASIC3.57□□□□□ -1.84
CCDC140Q96MF4 POSTN-201ENST00000379742 3071 ntAPPRIS ALT2 TSL 1 (best) BASIC3.57□□□□□ -1.84
CCDC140Q96MF4 CEP192-203ENST00000506447 7960 ntAPPRIS P2 TSL 5 BASIC3.57□□□□□ -1.84
CCDC140Q96MF4 C1orf112-202ENST00000359326 4002 ntAPPRIS P3 TSL 1 (best) BASIC3.57□□□□□ -1.84
CCDC140Q96MF4 PSMA4-201ENST00000044462 4411 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
CCDC140Q96MF4 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC3.57□□□□□ -1.84
CCDC140Q96MF4 RNA5SP295-201ENST00000362655 121 ntBASIC3.57□□□□□ -1.84
CCDC140Q96MF4 SNORD114-19-201ENST00000363072 75 ntBASIC3.57□□□□□ -1.84
CCDC140Q96MF4 SNORA71.2-201ENST00000364941 134 ntBASIC3.57□□□□□ -1.84
CCDC140Q96MF4 Y_RNA.562-201ENST00000384695 113 ntBASIC3.57□□□□□ -1.84
CCDC140Q96MF4 SNORD96B-201ENST00000386148 79 ntBASIC3.57□□□□□ -1.84
CCDC140Q96MF4 ZBBX-202ENST00000392764 2849 ntAPPRIS ALT2 TSL 1 (best) BASIC3.57□□□□□ -1.84
CCDC140Q96MF4 ZNF204P-201ENST00000416749 2397 ntBASIC3.57□□□□□ -1.84
CCDC140Q96MF4 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC3.57□□□□□ -1.84
CCDC140Q96MF4 AC010095.1-201ENST00000443543 144 ntBASIC3.57□□□□□ -1.84
CCDC140Q96MF4 AL365271.1-201ENST00000448909 603 ntTSL 3 BASIC3.57□□□□□ -1.84
CCDC140Q96MF4 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC3.57□□□□□ -1.84
CCDC140Q96MF4 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC3.57□□□□□ -1.84
CCDC140Q96MF4 SCARNA10-201ENST00000459255 330 ntBASIC3.57□□□□□ -1.84
CCDC140Q96MF4 RPL12P20-201ENST00000475538 479 ntBASIC3.57□□□□□ -1.84
CCDC140Q96MF4 ADGRG7-202ENST00000475887 2035 ntTSL 2 BASIC3.57□□□□□ -1.84
CCDC140Q96MF4 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC3.57□□□□□ -1.84
CCDC140Q96MF4 SEC31A-237ENST00000513858 3687 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
CCDC140Q96MF4 RNU5F-2P-201ENST00000516066 82 ntBASIC3.57□□□□□ -1.84
CCDC140Q96MF4 RNU6-1023P-201ENST00000516137 106 ntBASIC3.57□□□□□ -1.84
CCDC140Q96MF4 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC3.57□□□□□ -1.84
CCDC140Q96MF4 RNF111-212ENST00000561186 4536 ntTSL 2 BASIC3.57□□□□□ -1.84
CCDC140Q96MF4 NUDT7-203ENST00000563839 316 ntTSL 3 BASIC3.57□□□□□ -1.84
CCDC140Q96MF4 HACD4-202ENST00000495827 8267 ntAPPRIS P1 TSL 2 BASIC3.57□□□□□ -1.84
CCDC140Q96MF4 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
CCDC140Q96MF4 ETV1-205ENST00000405192 4402 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
CCDC140Q96MF4 CSPP1-203ENST00000519668 3715 ntAPPRIS ALT2 TSL 1 (best) BASIC3.57□□□□□ -1.84
CCDC140Q96MF4 RAG2-209ENST00000618712 2818 ntAPPRIS P1 TSL 4 BASIC3.57□□□□□ -1.84
CCDC140Q96MF4 OR8D1-202ENST00000641015 8286 ntAPPRIS P1 BASIC3.56□□□□□ -1.84
CCDC140Q96MF4 OR8D1-203ENST00000641897 8285 ntAPPRIS P1 BASIC3.56□□□□□ -1.84
CCDC140Q96MF4 EMSY-207ENST00000525919 4074 ntAPPRIS ALT1 TSL 1 (best) BASIC3.56□□□□□ -1.84
CCDC140Q96MF4 EIF4E3-202ENST00000389826 6083 ntTSL 5 BASIC3.56□□□□□ -1.84
CCDC140Q96MF4 DOCK7-219ENST00000635253 6423 ntAPPRIS ALT2 TSL 5 BASIC3.56□□□□□ -1.84
CCDC140Q96MF4 DDR2-202ENST00000367922 10160 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
CCDC140Q96MF4 Y_RNA.54-201ENST00000362766 105 ntBASIC3.56□□□□□ -1.84
CCDC140Q96MF4 RNU6-873P-201ENST00000363833 107 ntBASIC3.56□□□□□ -1.84
CCDC140Q96MF4 SNORA26.3-201ENST00000391119 136 ntBASIC3.56□□□□□ -1.84
CCDC140Q96MF4 MIR208B-201ENST00000401172 77 ntBASIC3.56□□□□□ -1.84
CCDC140Q96MF4 MIR298-201ENST00000401212 88 ntBASIC3.56□□□□□ -1.84
CCDC140Q96MF4 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC3.56□□□□□ -1.84
CCDC140Q96MF4 ARHGAP26-IT1-201ENST00000433186 388 ntTSL 3 BASIC3.56□□□□□ -1.84
CCDC140Q96MF4 HMGB1P37-201ENST00000439613 609 ntBASIC3.56□□□□□ -1.84
CCDC140Q96MF4 TTTY23B-202ENST00000451467 512 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
CCDC140Q96MF4 TTTY23-201ENST00000452889 512 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
CCDC140Q96MF4 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC3.56□□□□□ -1.84
CCDC140Q96MF4 CEACAMP4-201ENST00000457676 421 ntBASIC3.56□□□□□ -1.84
CCDC140Q96MF4 AP001324.2-201ENST00000461163 319 ntBASIC3.56□□□□□ -1.84
CCDC140Q96MF4 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC3.56□□□□□ -1.84
CCDC140Q96MF4 SNORA25.14-201ENST00000516481 132 ntBASIC3.56□□□□□ -1.84
CCDC140Q96MF4 RN7SKP49-201ENST00000516675 260 ntBASIC3.56□□□□□ -1.84
CCDC140Q96MF4 RNU6-567P-201ENST00000516746 107 ntBASIC3.56□□□□□ -1.84
CCDC140Q96MF4 AP000777.1-201ENST00000541495 355 ntTSL 3 BASIC3.56□□□□□ -1.84
CCDC140Q96MF4 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC3.56□□□□□ -1.84
CCDC140Q96MF4 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC3.56□□□□□ -1.84
CCDC140Q96MF4 AC144836.1-201ENST00000575911 340 ntTSL 2 BASIC3.56□□□□□ -1.84
CCDC140Q96MF4 MIR4270-201ENST00000581799 70 ntBASIC3.56□□□□□ -1.84
CCDC140Q96MF4 RN7SL690P-201ENST00000582087 240 ntBASIC3.56□□□□□ -1.84
CCDC140Q96MF4 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC3.56□□□□□ -1.84
CCDC140Q96MF4 AC243585.1-201ENST00000617867 607 ntTSL 3 BASIC3.56□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 112.2 ms