Protein–RNA interactions for Protein: Q00056

HOXA4, Homeobox protein Hox-A4, humanhuman

Predicted RBP Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4Q00056 AL133162.1-201ENST00000463228 453 ntBASIC3.13□□□□□ -1.91
HOXA4Q00056 BTF3L4P4-201ENST00000506381 449 ntBASIC3.13□□□□□ -1.91
HOXA4Q00056 AC020593.1-201ENST00000507399 299 ntBASIC3.13□□□□□ -1.91
HOXA4Q00056 RNU6-377P-201ENST00000515965 102 ntBASIC3.13□□□□□ -1.91
HOXA4Q00056 RNU1-103P-201ENST00000516502 125 ntBASIC3.13□□□□□ -1.91
HOXA4Q00056 RNU6-1183P-201ENST00000517054 60 ntBASIC3.13□□□□□ -1.91
HOXA4Q00056 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC3.13□□□□□ -1.91
HOXA4Q00056 AP005902.1-201ENST00000521358 186 ntBASIC3.13□□□□□ -1.91
HOXA4Q00056 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC3.13□□□□□ -1.91
HOXA4Q00056 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC3.13□□□□□ -1.91
HOXA4Q00056 SRGNP1-201ENST00000603392 451 ntBASIC3.13□□□□□ -1.91
HOXA4Q00056 RNU1-30P-201ENST00000606575 163 ntBASIC3.13□□□□□ -1.91
HOXA4Q00056 AC004852.3-201ENST00000614131 326 ntBASIC3.13□□□□□ -1.91
HOXA4Q00056 AC087588.2-201ENST00000617667 426 ntBASIC3.13□□□□□ -1.91
HOXA4Q00056 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC3.13□□□□□ -1.91
HOXA4Q00056 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC3.13□□□□□ -1.91
HOXA4Q00056 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC3.13□□□□□ -1.91
HOXA4Q00056 MTUS1-228ENST00000544260 3650 ntTSL 2 BASIC3.13□□□□□ -1.91
HOXA4Q00056 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
HOXA4Q00056 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC3.12□□□□□ -1.91
HOXA4Q00056 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
HOXA4Q00056 CCNH-206ENST00000508855 2391 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
HOXA4Q00056 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC3.12□□□□□ -1.91
HOXA4Q00056 SEL1L2-202ENST00000378072 1892 ntTSL 2 BASIC3.12□□□□□ -1.91
HOXA4Q00056 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
HOXA4Q00056 Y_RNA.389-201ENST00000383924 113 ntBASIC3.12□□□□□ -1.91
HOXA4Q00056 RNU6-72P-201ENST00000384285 79 ntBASIC3.12□□□□□ -1.91
HOXA4Q00056 RN7SKP202-201ENST00000410439 330 ntBASIC3.12□□□□□ -1.91
HOXA4Q00056 RAB9AP3-201ENST00000412737 573 ntBASIC3.12□□□□□ -1.91
HOXA4Q00056 RAC1P3-201ENST00000416129 580 ntBASIC3.12□□□□□ -1.91
HOXA4Q00056 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC3.12□□□□□ -1.91
HOXA4Q00056 MTND3P9-201ENST00000429526 346 ntBASIC3.12□□□□□ -1.91
HOXA4Q00056 AL445488.1-202ENST00000430623 545 ntTSL 3 BASIC3.12□□□□□ -1.91
HOXA4Q00056 CEP57L1P1-201ENST00000430943 1201 ntBASIC3.12□□□□□ -1.91
HOXA4Q00056 MTCYBP9-201ENST00000431021 303 ntBASIC3.12□□□□□ -1.91
HOXA4Q00056 RPS6P12-201ENST00000432491 726 ntBASIC3.12□□□□□ -1.91
HOXA4Q00056 RAB9AP1-201ENST00000449393 573 ntBASIC3.12□□□□□ -1.91
HOXA4Q00056 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
HOXA4Q00056 UBE2CP3-201ENST00000502715 450 ntBASIC3.12□□□□□ -1.91
HOXA4Q00056 ENSA-210ENST00000503241 574 ntTSL 3 BASIC3.12□□□□□ -1.91
HOXA4Q00056 MTCO2P24-201ENST00000515611 426 ntBASIC3.12□□□□□ -1.91
HOXA4Q00056 RNA5SP143-201ENST00000516936 115 ntBASIC3.12□□□□□ -1.91
HOXA4Q00056 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC3.12□□□□□ -1.91
HOXA4Q00056 AC109479.2-201ENST00000517842 174 ntBASIC3.12□□□□□ -1.91
HOXA4Q00056 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC3.12□□□□□ -1.91
HOXA4Q00056 GNAI2P1-201ENST00000541815 315 ntBASIC3.12□□□□□ -1.91
HOXA4Q00056 H3F3AP1-201ENST00000559984 334 ntBASIC3.12□□□□□ -1.91
HOXA4Q00056 UBE2Q2P8-201ENST00000560644 102 ntBASIC3.12□□□□□ -1.91
HOXA4Q00056 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC3.12□□□□□ -1.91
HOXA4Q00056 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC3.12□□□□□ -1.91
HOXA4Q00056 MIR4782-201ENST00000577987 79 ntBASIC3.12□□□□□ -1.91
HOXA4Q00056 AC113195.1-201ENST00000579952 141 ntBASIC3.12□□□□□ -1.91
HOXA4Q00056 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC3.12□□□□□ -1.91
HOXA4Q00056 AC006023.2-201ENST00000609916 167 ntBASIC3.12□□□□□ -1.91
HOXA4Q00056 AL110115.1-201ENST00000614396 364 ntBASIC3.12□□□□□ -1.91
HOXA4Q00056 HMGB1P24-202ENST00000615653 685 ntBASIC3.12□□□□□ -1.91
HOXA4Q00056 TEX41-280ENST00000629185 591 ntTSL 5 BASIC3.12□□□□□ -1.91
HOXA4Q00056 AL606534.2-204ENST00000635008 178 ntBASIC3.12□□□□□ -1.91
HOXA4Q00056 AC012442.3-202ENST00000636742 206 ntBASIC3.12□□□□□ -1.91
HOXA4Q00056 U2.21-201ENST00000637295 81 ntBASIC3.12□□□□□ -1.91
HOXA4Q00056 U4.7-201ENST00000638126 106 ntBASIC3.12□□□□□ -1.91
HOXA4Q00056 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC3.12□□□□□ -1.91
HOXA4Q00056 SLITRK5-201ENST00000325089 21103 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
HOXA4Q00056 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC3.11□□□□□ -1.91
HOXA4Q00056 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC3.11□□□□□ -1.91
HOXA4Q00056 MCF2-203ENST00000370576 3688 ntAPPRIS P3 TSL 1 (best) BASIC3.11□□□□□ -1.91
HOXA4Q00056 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC3.11□□□□□ -1.91
HOXA4Q00056 CLHC1-201ENST00000401408 2248 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
HOXA4Q00056 LBR-202ENST00000338179 3812 ntAPPRIS P1 TSL 5 BASIC3.11□□□□□ -1.91
HOXA4Q00056 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC3.11□□□□□ -1.91
HOXA4Q00056 Y_RNA.39-201ENST00000362620 98 ntBASIC3.11□□□□□ -1.91
HOXA4Q00056 Y_RNA.47-201ENST00000362697 108 ntBASIC3.11□□□□□ -1.91
HOXA4Q00056 RNU6-778P-201ENST00000363269 103 ntBASIC3.11□□□□□ -1.91
HOXA4Q00056 U3.6-201ENST00000363622 211 ntBASIC3.11□□□□□ -1.91
HOXA4Q00056 RNU5E-7P-201ENST00000365290 117 ntBASIC3.11□□□□□ -1.91
HOXA4Q00056 RNU1-89P-201ENST00000384592 164 ntBASIC3.11□□□□□ -1.91
HOXA4Q00056 RNU6-658P-201ENST00000384606 106 ntBASIC3.11□□□□□ -1.91
HOXA4Q00056 Y_RNA.577-201ENST00000384794 101 ntBASIC3.11□□□□□ -1.91
HOXA4Q00056 HLFP1-201ENST00000402375 499 ntBASIC3.11□□□□□ -1.91
HOXA4Q00056 AL591034.2-201ENST00000402839 359 ntBASIC3.11□□□□□ -1.91
HOXA4Q00056 RNA5SP239-201ENST00000410218 129 ntBASIC3.11□□□□□ -1.91
HOXA4Q00056 AC090617.2-201ENST00000433167 404 ntTSL 3 BASIC3.11□□□□□ -1.91
HOXA4Q00056 AC098831.1-201ENST00000440661 216 ntBASIC3.11□□□□□ -1.91
HOXA4Q00056 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC3.11□□□□□ -1.91
HOXA4Q00056 SNORA84-201ENST00000459229 133 ntBASIC3.11□□□□□ -1.91
HOXA4Q00056 U8.21-201ENST00000459536 136 ntBASIC3.11□□□□□ -1.91
HOXA4Q00056 CREM-226ENST00000469949 721 ntTSL 3 BASIC3.11□□□□□ -1.91
HOXA4Q00056 AC069360.1-201ENST00000503469 431 ntTSL 2 BASIC3.11□□□□□ -1.91
HOXA4Q00056 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC3.11□□□□□ -1.91
HOXA4Q00056 RNU6-612P-201ENST00000516909 102 ntBASIC3.11□□□□□ -1.91
HOXA4Q00056 AP000889.1-201ENST00000530968 660 ntBASIC3.11□□□□□ -1.91
HOXA4Q00056 MFAP5-205ENST00000535336 566 ntTSL 4 BASIC3.11□□□□□ -1.91
HOXA4Q00056 CACNA1C-IT2-201ENST00000541871 589 ntTSL 2 BASIC3.11□□□□□ -1.91
HOXA4Q00056 AC005476.1-201ENST00000554427 397 ntBASIC3.11□□□□□ -1.91
HOXA4Q00056 LINC00933-203ENST00000559812 219 ntBASIC3.11□□□□□ -1.91
HOXA4Q00056 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC3.11□□□□□ -1.91
HOXA4Q00056 ZNF192P1-203ENST00000565888 810 ntBASIC3.11□□□□□ -1.91
HOXA4Q00056 AL360157.1-201ENST00000565962 87 ntBASIC3.11□□□□□ -1.91
HOXA4Q00056 MIR1254-2-201ENST00000579553 63 ntBASIC3.11□□□□□ -1.91
HOXA4Q00056 AC005046.1-201ENST00000608515 625 ntBASIC3.11□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 252.7 ms