Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 C18orf54-202ENST00000382911 4056 ntTSL 5 BASIC2.7□□□□□ -1.98
HOXA1P49639 CUL1P1-201ENST00000509510 2425 ntBASIC2.7□□□□□ -1.98
HOXA1P49639 AC090740.1-201ENST00000623193 2262 ntBASIC2.7□□□□□ -1.98
HOXA1P49639 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC2.7□□□□□ -1.98
HOXA1P49639 Y_RNA.67-201ENST00000362870 100 ntBASIC2.7□□□□□ -1.98
HOXA1P49639 RNA5SP197-201ENST00000363357 119 ntBASIC2.7□□□□□ -1.98
HOXA1P49639 SNORD56.5-201ENST00000364281 72 ntBASIC2.7□□□□□ -1.98
HOXA1P49639 Z98749.2-208ENST00000381646 500 ntBASIC2.7□□□□□ -1.98
HOXA1P49639 Y_RNA.474-201ENST00000384341 102 ntBASIC2.7□□□□□ -1.98
HOXA1P49639 RNU6-1035P-201ENST00000384477 107 ntBASIC2.7□□□□□ -1.98
HOXA1P49639 RPL21P17-201ENST00000397467 475 ntBASIC2.7□□□□□ -1.98
HOXA1P49639 AL356967.1-201ENST00000406305 431 ntBASIC2.7□□□□□ -1.98
HOXA1P49639 RNU6-1077P-201ENST00000410506 102 ntBASIC2.7□□□□□ -1.98
HOXA1P49639 Y_RNA.623-201ENST00000411128 95 ntBASIC2.7□□□□□ -1.98
HOXA1P49639 AC016831.2-201ENST00000417179 352 ntBASIC2.7□□□□□ -1.98
HOXA1P49639 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC2.7□□□□□ -1.98
HOXA1P49639 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC2.7□□□□□ -1.98
HOXA1P49639 AC233279.1-201ENST00000455300 423 ntBASIC2.7□□□□□ -1.98
HOXA1P49639 snoU13.28-201ENST00000459235 104 ntBASIC2.7□□□□□ -1.98
HOXA1P49639 RPL21P10-201ENST00000463521 490 ntBASIC2.7□□□□□ -1.98
HOXA1P49639 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC2.7□□□□□ -1.98
HOXA1P49639 AP005597.4-201ENST00000526762 229 ntBASIC2.7□□□□□ -1.98
HOXA1P49639 AP005639.2-201ENST00000527592 928 ntBASIC2.7□□□□□ -1.98
HOXA1P49639 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC2.7□□□□□ -1.98
HOXA1P49639 AC013799.1-201ENST00000531157 348 ntTSL 2 BASIC2.7□□□□□ -1.98
HOXA1P49639 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC2.7□□□□□ -1.98
HOXA1P49639 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC2.7□□□□□ -1.98
HOXA1P49639 AC093515.1-201ENST00000567103 445 ntTSL 5 BASIC2.7□□□□□ -1.98
HOXA1P49639 AC138761.3-201ENST00000579993 334 ntBASIC2.7□□□□□ -1.98
HOXA1P49639 APOOP1-201ENST00000604695 592 ntBASIC2.7□□□□□ -1.98
HOXA1P49639 AC087045.1-201ENST00000605856 382 ntBASIC2.7□□□□□ -1.98
HOXA1P49639 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
HOXA1P49639 AL138726.1-201ENST00000614873 333 ntBASIC2.7□□□□□ -1.98
HOXA1P49639 AC009233.1-201ENST00000616477 371 ntBASIC2.7□□□□□ -1.98
HOXA1P49639 AC068831.7-201ENST00000616954 363 ntBASIC2.7□□□□□ -1.98
HOXA1P49639 AL731566.2-201ENST00000618971 317 ntBASIC2.7□□□□□ -1.98
HOXA1P49639 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC2.7□□□□□ -1.98
HOXA1P49639 U2.21-201ENST00000637295 81 ntBASIC2.7□□□□□ -1.98
HOXA1P49639 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC2.7□□□□□ -1.98
HOXA1P49639 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC2.7□□□□□ -1.98
HOXA1P49639 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC2.7□□□□□ -1.98
HOXA1P49639 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC2.69□□□□□ -1.98
HOXA1P49639 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
HOXA1P49639 MIR412-201ENST00000362142 91 ntBASIC2.69□□□□□ -1.98
HOXA1P49639 RNU6-37P-201ENST00000362692 107 ntBASIC2.69□□□□□ -1.98
HOXA1P49639 RNU6-11P-201ENST00000364234 107 ntBASIC2.69□□□□□ -1.98
HOXA1P49639 RNU6-7-201ENST00000364784 107 ntBASIC2.69□□□□□ -1.98
HOXA1P49639 RNU6-8-201ENST00000365467 107 ntBASIC2.69□□□□□ -1.98
HOXA1P49639 RNU6-25P-201ENST00000383873 107 ntBASIC2.69□□□□□ -1.98
HOXA1P49639 RNU6-1-201ENST00000383898 107 ntBASIC2.69□□□□□ -1.98
HOXA1P49639 RNU6-48P-201ENST00000384161 107 ntBASIC2.69□□□□□ -1.98
HOXA1P49639 RNU6-36P-201ENST00000384172 107 ntBASIC2.69□□□□□ -1.98
HOXA1P49639 RNU6-4P-201ENST00000384205 107 ntBASIC2.69□□□□□ -1.98
HOXA1P49639 RNU6-5P-201ENST00000384238 107 ntBASIC2.69□□□□□ -1.98
HOXA1P49639 RNU6-3P-201ENST00000384314 107 ntBASIC2.69□□□□□ -1.98
HOXA1P49639 RNU6-16P-201ENST00000384385 107 ntBASIC2.69□□□□□ -1.98
HOXA1P49639 RNU6-15P-201ENST00000384534 107 ntBASIC2.69□□□□□ -1.98
HOXA1P49639 RNU6-2-201ENST00000384627 107 ntBASIC2.69□□□□□ -1.98
HOXA1P49639 RNU6-29P-201ENST00000384637 107 ntBASIC2.69□□□□□ -1.98
HOXA1P49639 U8.11-201ENST00000384699 133 ntBASIC2.69□□□□□ -1.98
HOXA1P49639 U8.12-201ENST00000384701 133 ntBASIC2.69□□□□□ -1.98
HOXA1P49639 RNU6-9-201ENST00000384776 107 ntBASIC2.69□□□□□ -1.98
HOXA1P49639 RNU6-33P-201ENST00000384793 107 ntBASIC2.69□□□□□ -1.98
HOXA1P49639 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
HOXA1P49639 AL356057.2-201ENST00000403318 432 ntBASIC2.69□□□□□ -1.98
HOXA1P49639 RNA5SP38-201ENST00000410750 119 ntBASIC2.69□□□□□ -1.98
HOXA1P49639 AL353729.1-201ENST00000425044 720 ntBASIC2.69□□□□□ -1.98
HOXA1P49639 RPL23AP58-201ENST00000440453 469 ntBASIC2.69□□□□□ -1.98
HOXA1P49639 RPL32P28-201ENST00000443577 397 ntBASIC2.69□□□□□ -1.98
HOXA1P49639 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC2.69□□□□□ -1.98
HOXA1P49639 UBBP3-201ENST00000445497 241 ntBASIC2.69□□□□□ -1.98
HOXA1P49639 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC2.69□□□□□ -1.98
HOXA1P49639 AL356859.1-201ENST00000449180 414 ntTSL 5 BASIC2.69□□□□□ -1.98
HOXA1P49639 AC115115.1-201ENST00000449927 248 ntBASIC2.69□□□□□ -1.98
HOXA1P49639 U8.18-201ENST00000459285 133 ntBASIC2.69□□□□□ -1.98
HOXA1P49639 RPL30P14-201ENST00000482744 348 ntBASIC2.69□□□□□ -1.98
HOXA1P49639 ABCA17P-206ENST00000512848 467 ntTSL 2 BASIC2.69□□□□□ -1.98
HOXA1P49639 LINC02545-201ENST00000525381 306 ntTSL 3 BASIC2.69□□□□□ -1.98
HOXA1P49639 AP000867.2-201ENST00000532468 320 ntBASIC2.69□□□□□ -1.98
HOXA1P49639 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC2.69□□□□□ -1.98
HOXA1P49639 CYCSP39-201ENST00000565821 309 ntBASIC2.69□□□□□ -1.98
HOXA1P49639 AMZ2P1-203ENST00000565833 850 ntBASIC2.69□□□□□ -1.98
HOXA1P49639 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC2.69□□□□□ -1.98
HOXA1P49639 MIR4790-201ENST00000577799 79 ntBASIC2.69□□□□□ -1.98
HOXA1P49639 POLR3GP2-201ENST00000588366 668 ntBASIC2.69□□□□□ -1.98
HOXA1P49639 RNU6-6P-201ENST00000606623 107 ntBASIC2.69□□□□□ -1.98
HOXA1P49639 AC135507.2-201ENST00000612443 309 ntBASIC2.69□□□□□ -1.98
HOXA1P49639 AC002076.2-201ENST00000617362 122 ntBASIC2.69□□□□□ -1.98
HOXA1P49639 AC159540.2-206ENST00000619371 355 ntTSL 3 BASIC2.69□□□□□ -1.98
HOXA1P49639 AL359757.2-201ENST00000624309 274 ntBASIC2.69□□□□□ -1.98
HOXA1P49639 AC006026.1-201ENST00000444025 1803 ntBASIC2.69□□□□□ -1.98
HOXA1P49639 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC2.69□□□□□ -1.98
HOXA1P49639 ZNF519P1-201ENST00000449011 1626 ntBASIC2.68□□□□□ -1.98
HOXA1P49639 AL359693.1-201ENST00000614959 2407 ntBASIC2.68□□□□□ -1.98
HOXA1P49639 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
HOXA1P49639 RNU6-778P-201ENST00000363269 103 ntBASIC2.68□□□□□ -1.98
HOXA1P49639 TCEAL7-202ENST00000372666 852 ntAPPRIS P1 TSL 2 BASIC2.68□□□□□ -1.98
HOXA1P49639 Y_RNA.473-201ENST00000384333 102 ntBASIC2.68□□□□□ -1.98
HOXA1P49639 RNA5SP252-201ENST00000391131 119 ntBASIC2.68□□□□□ -1.98
HOXA1P49639 AL096701.2-201ENST00000416920 238 ntBASIC2.68□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 90.6 ms