Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 AP000852.1-201ENST00000472460 573 ntBASIC2.5□□□□□ -2.01
HOXD4P09016 RPS29P25-201ENST00000481709 171 ntBASIC2.5□□□□□ -2.01
HOXD4P09016 AC103975.1-201ENST00000482506 483 ntBASIC2.5□□□□□ -2.01
HOXD4P09016 AC092666.1-201ENST00000492054 573 ntTSL 4 BASIC2.5□□□□□ -2.01
HOXD4P09016 AC116353.2-201ENST00000505332 712 ntBASIC2.5□□□□□ -2.01
HOXD4P09016 AC104806.1-201ENST00000508720 308 ntBASIC2.5□□□□□ -2.01
HOXD4P09016 SMAD1-AS2-201ENST00000508936 1090 ntTSL 1 (best) BASIC2.5□□□□□ -2.01
HOXD4P09016 AC098591.2-201ENST00000510152 315 ntBASIC2.5□□□□□ -2.01
HOXD4P09016 AC096725.1-201ENST00000514266 313 ntBASIC2.5□□□□□ -2.01
HOXD4P09016 AC105417.1-201ENST00000514691 285 ntBASIC2.5□□□□□ -2.01
HOXD4P09016 RNU6-123P-201ENST00000516163 102 ntBASIC2.5□□□□□ -2.01
HOXD4P09016 RNU6-677P-201ENST00000516914 101 ntBASIC2.5□□□□□ -2.01
HOXD4P09016 SNORA31.21-201ENST00000517180 77 ntBASIC2.5□□□□□ -2.01
HOXD4P09016 AC134698.4-201ENST00000523451 826 ntBASIC2.5□□□□□ -2.01
HOXD4P09016 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC2.5□□□□□ -2.01
HOXD4P09016 AL020991.1-201ENST00000612314 373 ntBASIC2.5□□□□□ -2.01
HOXD4P09016 AC104237.2-201ENST00000612456 443 ntBASIC2.5□□□□□ -2.01
HOXD4P09016 AC130324.3-201ENST00000614165 542 ntBASIC2.5□□□□□ -2.01
HOXD4P09016 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC2.5□□□□□ -2.01
HOXD4P09016 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC2.5□□□□□ -2.01
HOXD4P09016 MTND5P42-201ENST00000637720 498 ntBASIC2.5□□□□□ -2.01
HOXD4P09016 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC2.5□□□□□ -2.01
HOXD4P09016 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC2.5□□□□□ -2.01
HOXD4P09016 OFD1P6Y-202ENST00000451061 2724 ntBASIC2.5□□□□□ -2.01
HOXD4P09016 AL354685.2-201ENST00000448218 1447 ntBASIC2.5□□□□□ -2.01
HOXD4P09016 AC093536.2-201ENST00000565257 1406 ntBASIC2.5□□□□□ -2.01
HOXD4P09016 AC004520.1-201ENST00000608362 1413 ntBASIC2.5□□□□□ -2.01
HOXD4P09016 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC2.49□□□□□ -2.01
HOXD4P09016 ZNF271P-202ENST00000465539 1970 ntBASIC2.49□□□□□ -2.01
HOXD4P09016 AL139276.1-201ENST00000311910 1001 ntBASIC2.49□□□□□ -2.01
HOXD4P09016 RNU6-859P-201ENST00000362728 107 ntBASIC2.49□□□□□ -2.01
HOXD4P09016 RNU1-35P-201ENST00000362782 153 ntBASIC2.49□□□□□ -2.01
HOXD4P09016 RNU6-552P-201ENST00000362869 119 ntBASIC2.49□□□□□ -2.01
HOXD4P09016 RNU6-877P-201ENST00000383868 107 ntBASIC2.49□□□□□ -2.01
HOXD4P09016 Y_RNA.390-201ENST00000383932 102 ntBASIC2.49□□□□□ -2.01
HOXD4P09016 RNU6-198P-201ENST00000384258 104 ntBASIC2.49□□□□□ -2.01
HOXD4P09016 PIGP-205ENST00000399103 656 ntAPPRIS P1 TSL 1 (best) BASIC2.49□□□□□ -2.01
HOXD4P09016 OR9R1P-201ENST00000412200 877 ntBASIC2.49□□□□□ -2.01
HOXD4P09016 BTF3L4P3-201ENST00000418879 476 ntBASIC2.49□□□□□ -2.01
HOXD4P09016 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC2.49□□□□□ -2.01
HOXD4P09016 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC2.49□□□□□ -2.01
HOXD4P09016 AL109913.1-201ENST00000421173 514 ntBASIC2.49□□□□□ -2.01
HOXD4P09016 HMGN2P30-201ENST00000423237 256 ntBASIC2.49□□□□□ -2.01
HOXD4P09016 CR769767.1-201ENST00000436337 346 ntBASIC2.49□□□□□ -2.01
HOXD4P09016 AL513043.1-201ENST00000439124 535 ntBASIC2.49□□□□□ -2.01
HOXD4P09016 UBBP3-201ENST00000445497 241 ntBASIC2.49□□□□□ -2.01
HOXD4P09016 CBWD4P-201ENST00000445695 655 ntBASIC2.49□□□□□ -2.01
HOXD4P09016 MTND1P18-201ENST00000448191 573 ntBASIC2.49□□□□□ -2.01
HOXD4P09016 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC2.49□□□□□ -2.01
HOXD4P09016 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC2.49□□□□□ -2.01
HOXD4P09016 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC2.49□□□□□ -2.01
HOXD4P09016 AL135752.1-201ENST00000479477 471 ntBASIC2.49□□□□□ -2.01
HOXD4P09016 LINC02377-202ENST00000505436 523 ntTSL 5 BASIC2.49□□□□□ -2.01
HOXD4P09016 RNU4ATAC8P-201ENST00000516196 109 ntBASIC2.49□□□□□ -2.01
HOXD4P09016 Y_RNA.689-201ENST00000516589 107 ntBASIC2.49□□□□□ -2.01
HOXD4P09016 RNA5SP471-201ENST00000516971 106 ntBASIC2.49□□□□□ -2.01
HOXD4P09016 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC2.49□□□□□ -2.01
HOXD4P09016 SUB1P1-201ENST00000524415 382 ntBASIC2.49□□□□□ -2.01
HOXD4P09016 AP003498.1-201ENST00000532530 347 ntTSL 3 BASIC2.49□□□□□ -2.01
HOXD4P09016 AP002770.2-201ENST00000543613 532 ntBASIC2.49□□□□□ -2.01
HOXD4P09016 AL359237.1-201ENST00000554305 826 ntTSL 5 BASIC2.49□□□□□ -2.01
HOXD4P09016 AC091544.4-201ENST00000555268 342 ntBASIC2.49□□□□□ -2.01
HOXD4P09016 MIR4446-201ENST00000578505 67 ntBASIC2.49□□□□□ -2.01
HOXD4P09016 AL158032.1-201ENST00000605401 106 ntBASIC2.49□□□□□ -2.01
HOXD4P09016 AC008945.2-201ENST00000606056 604 ntBASIC2.49□□□□□ -2.01
HOXD4P09016 RMST_3.1-201ENST00000611651 109 ntBASIC2.49□□□□□ -2.01
HOXD4P09016 AL161629.2-201ENST00000615347 275 ntBASIC2.49□□□□□ -2.01
HOXD4P09016 AL359757.2-201ENST00000624309 274 ntBASIC2.49□□□□□ -2.01
HOXD4P09016 MIR3662-201ENST00000637030 95 ntBASIC2.49□□□□□ -2.01
HOXD4P09016 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC2.49□□□□□ -2.01
HOXD4P09016 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC2.49□□□□□ -2.01
HOXD4P09016 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC2.48□□□□□ -2.01
HOXD4P09016 RPL9P7-201ENST00000330965 580 ntBASIC2.48□□□□□ -2.01
HOXD4P09016 RNU6-1287P-201ENST00000362914 107 ntBASIC2.48□□□□□ -2.01
HOXD4P09016 RNU6-1060P-201ENST00000384664 107 ntBASIC2.48□□□□□ -2.01
HOXD4P09016 RNU6-550P-201ENST00000391057 101 ntBASIC2.48□□□□□ -2.01
HOXD4P09016 RNU6-903P-201ENST00000391270 109 ntBASIC2.48□□□□□ -2.01
HOXD4P09016 MIR1261-201ENST00000408659 82 ntBASIC2.48□□□□□ -2.01
HOXD4P09016 RPL30P16-201ENST00000419341 429 ntBASIC2.48□□□□□ -2.01
HOXD4P09016 MTND4LP11-201ENST00000422184 280 ntBASIC2.48□□□□□ -2.01
HOXD4P09016 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC2.48□□□□□ -2.01
HOXD4P09016 HMGB1P27-201ENST00000431429 603 ntBASIC2.48□□□□□ -2.01
HOXD4P09016 AL591212.2-201ENST00000433923 257 ntBASIC2.48□□□□□ -2.01
HOXD4P09016 RPL23AP58-201ENST00000440453 469 ntBASIC2.48□□□□□ -2.01
HOXD4P09016 MTND4P25-201ENST00000441039 533 ntBASIC2.48□□□□□ -2.01
HOXD4P09016 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC2.48□□□□□ -2.01
HOXD4P09016 WASF1P1-201ENST00000447560 1131 ntBASIC2.48□□□□□ -2.01
HOXD4P09016 RPL37P4-201ENST00000448908 268 ntBASIC2.48□□□□□ -2.01
HOXD4P09016 RNU6-953P-201ENST00000459154 107 ntBASIC2.48□□□□□ -2.01
HOXD4P09016 AC073901.1-201ENST00000462471 408 ntBASIC2.48□□□□□ -2.01
HOXD4P09016 RPL31P58-201ENST00000469001 379 ntBASIC2.48□□□□□ -2.01
HOXD4P09016 RPS20P22-201ENST00000473700 357 ntBASIC2.48□□□□□ -2.01
HOXD4P09016 TRBV12-1-201ENST00000479785 344 ntBASIC2.48□□□□□ -2.01
HOXD4P09016 EIF4EP3-201ENST00000498782 656 ntBASIC2.48□□□□□ -2.01
HOXD4P09016 SEM1P1-201ENST00000506694 209 ntBASIC2.48□□□□□ -2.01
HOXD4P09016 RNU4-29P-201ENST00000515943 174 ntBASIC2.48□□□□□ -2.01
HOXD4P09016 RNU6-685P-201ENST00000517088 95 ntBASIC2.48□□□□□ -2.01
HOXD4P09016 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC2.48□□□□□ -2.01
HOXD4P09016 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC2.48□□□□□ -2.01
HOXD4P09016 HIF1AP1-201ENST00000553642 175 ntBASIC2.48□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 111 ms