Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 AC105999.1-201ENST00000518722 473 ntTSL 3 BASIC2.81□□□□□ -1.96
LMX1BO60663 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC2.81□□□□□ -1.96
LMX1BO60663 OR5D17P-201ENST00000531492 978 ntBASIC2.81□□□□□ -1.96
LMX1BO60663 AL121821.2-201ENST00000556081 394 ntBASIC2.81□□□□□ -1.96
LMX1BO60663 MTCO3P13-201ENST00000577757 781 ntBASIC2.81□□□□□ -1.96
LMX1BO60663 AC138761.3-201ENST00000579993 334 ntBASIC2.81□□□□□ -1.96
LMX1BO60663 U2.17-201ENST00000611454 95 ntBASIC2.81□□□□□ -1.96
LMX1BO60663 AC090971.5-201ENST00000621102 293 ntBASIC2.81□□□□□ -1.96
LMX1BO60663 AL360181.4-201ENST00000621752 134 ntBASIC2.81□□□□□ -1.96
LMX1BO60663 AC006386.2-201ENST00000624491 75 ntBASIC2.81□□□□□ -1.96
LMX1BO60663 AC012005.1-201ENST00000624575 75 ntBASIC2.81□□□□□ -1.96
LMX1BO60663 KLRA1P-202ENST00000510134 1410 ntTSL 5 BASIC2.81□□□□□ -1.96
LMX1BO60663 LINC01021-204ENST00000512067 1610 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
LMX1BO60663 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC2.81□□□□□ -1.96
LMX1BO60663 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
LMX1BO60663 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
LMX1BO60663 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
LMX1BO60663 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC2.8□□□□□ -1.96
LMX1BO60663 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC2.8□□□□□ -1.96
LMX1BO60663 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC2.8□□□□□ -1.96
LMX1BO60663 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
LMX1BO60663 Y_RNA.128-201ENST00000363391 112 ntBASIC2.8□□□□□ -1.96
LMX1BO60663 SNORA63C-201ENST00000364578 129 ntBASIC2.8□□□□□ -1.96
LMX1BO60663 RNU6-45P-201ENST00000384471 107 ntBASIC2.8□□□□□ -1.96
LMX1BO60663 MIR514A1-201ENST00000385133 98 ntBASIC2.8□□□□□ -1.96
LMX1BO60663 RPS4XP7-201ENST00000406274 780 ntBASIC2.8□□□□□ -1.96
LMX1BO60663 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC2.8□□□□□ -1.96
LMX1BO60663 RNU4-47P-201ENST00000410876 114 ntBASIC2.8□□□□□ -1.96
LMX1BO60663 RNU6-370P-201ENST00000411008 104 ntBASIC2.8□□□□□ -1.96
LMX1BO60663 AL513331.1-201ENST00000411908 397 ntBASIC2.8□□□□□ -1.96
LMX1BO60663 RPL7P10-201ENST00000417407 739 ntBASIC2.8□□□□□ -1.96
LMX1BO60663 ATG3P1-201ENST00000419507 911 ntBASIC2.8□□□□□ -1.96
LMX1BO60663 MTCO2P27-201ENST00000420740 428 ntBASIC2.8□□□□□ -1.96
LMX1BO60663 AL590632.1-201ENST00000424289 371 ntBASIC2.8□□□□□ -1.96
LMX1BO60663 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC2.8□□□□□ -1.96
LMX1BO60663 AC007557.1-201ENST00000451711 541 ntTSL 2 BASIC2.8□□□□□ -1.96
LMX1BO60663 RNU6-953P-201ENST00000459154 107 ntBASIC2.8□□□□□ -1.96
LMX1BO60663 RPS27P29-201ENST00000463110 252 ntBASIC2.8□□□□□ -1.96
LMX1BO60663 RPL21P13-201ENST00000488305 481 ntBASIC2.8□□□□□ -1.96
LMX1BO60663 RPS27P27-201ENST00000498779 255 ntBASIC2.8□□□□□ -1.96
LMX1BO60663 AC093523.1-201ENST00000503268 499 ntTSL 3 BASIC2.8□□□□□ -1.96
LMX1BO60663 AC079140.5-201ENST00000507882 310 ntBASIC2.8□□□□□ -1.96
LMX1BO60663 AC131956.2-201ENST00000510922 512 ntTSL 3 BASIC2.8□□□□□ -1.96
LMX1BO60663 AC104211.1-202ENST00000521307 866 ntTSL 3 BASIC2.8□□□□□ -1.96
LMX1BO60663 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC2.8□□□□□ -1.96
LMX1BO60663 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC2.8□□□□□ -1.96
LMX1BO60663 EIF4BP1-201ENST00000554881 351 ntBASIC2.8□□□□□ -1.96
LMX1BO60663 AL355836.1-201ENST00000555951 870 ntBASIC2.8□□□□□ -1.96
LMX1BO60663 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC2.8□□□□□ -1.96
LMX1BO60663 MED28P6-201ENST00000558776 231 ntBASIC2.8□□□□□ -1.96
LMX1BO60663 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC2.8□□□□□ -1.96
LMX1BO60663 AC007151.1-201ENST00000572774 483 ntBASIC2.8□□□□□ -1.96
LMX1BO60663 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC2.8□□□□□ -1.96
LMX1BO60663 AP001330.4-201ENST00000604350 154 ntBASIC2.8□□□□□ -1.96
LMX1BO60663 AL360085.1-201ENST00000604713 532 ntBASIC2.8□□□□□ -1.96
LMX1BO60663 AL133215.3-201ENST00000609801 448 ntBASIC2.8□□□□□ -1.96
LMX1BO60663 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC2.8□□□□□ -1.96
LMX1BO60663 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC2.8□□□□□ -1.96
LMX1BO60663 CPD-202ENST00000543464 4007 ntTSL 2 BASIC2.8□□□□□ -1.96
LMX1BO60663 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC2.8□□□□□ -1.96
LMX1BO60663 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC2.8□□□□□ -1.96
LMX1BO60663 EBAG9-210ENST00000620557 2186 ntAPPRIS P1 TSL 3 BASIC2.8□□□□□ -1.96
LMX1BO60663 SDAD1P2-201ENST00000441308 2028 ntBASIC2.8□□□□□ -1.96
LMX1BO60663 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC2.79□□□□□ -1.96
LMX1BO60663 OR4G2P-202ENST00000641004 1759 ntBASIC2.79□□□□□ -1.96
LMX1BO60663 AC004925.1-201ENST00000624256 2706 ntBASIC2.79□□□□□ -1.96
LMX1BO60663 Y_RNA.31-201ENST00000362574 102 ntBASIC2.79□□□□□ -1.96
LMX1BO60663 U3.6-201ENST00000363622 211 ntBASIC2.79□□□□□ -1.96
LMX1BO60663 IARS-201ENST00000375627 697 ntTSL 3 BASIC2.79□□□□□ -1.96
LMX1BO60663 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC2.79□□□□□ -1.96
LMX1BO60663 SNORA75B-201ENST00000384053 137 ntBASIC2.79□□□□□ -1.96
LMX1BO60663 Y_RNA.482-201ENST00000384377 111 ntBASIC2.79□□□□□ -1.96
LMX1BO60663 Y_RNA.510-201ENST00000384511 114 ntBASIC2.79□□□□□ -1.96
LMX1BO60663 MIR559-201ENST00000385188 96 ntBASIC2.79□□□□□ -1.96
LMX1BO60663 MIR591-201ENST00000385290 95 ntBASIC2.79□□□□□ -1.96
LMX1BO60663 MTCYBP4-201ENST00000401524 249 ntBASIC2.79□□□□□ -1.96
LMX1BO60663 CYCSP33-201ENST00000414485 327 ntBASIC2.79□□□□□ -1.96
LMX1BO60663 Z85995.1-201ENST00000415547 335 ntBASIC2.79□□□□□ -1.96
LMX1BO60663 MTND2P23-201ENST00000422990 651 ntBASIC2.79□□□□□ -1.96
LMX1BO60663 BRK1P2-201ENST00000442875 223 ntBASIC2.79□□□□□ -1.96
LMX1BO60663 MTCO3P10-201ENST00000455912 772 ntBASIC2.79□□□□□ -1.96
LMX1BO60663 ELOCP24-201ENST00000456370 334 ntBASIC2.79□□□□□ -1.96
LMX1BO60663 AC104472.2-201ENST00000469035 601 ntBASIC2.79□□□□□ -1.96
LMX1BO60663 AP002884.2-201ENST00000471647 395 ntBASIC2.79□□□□□ -1.96
LMX1BO60663 TRBV1-201ENST00000476502 284 ntBASIC2.79□□□□□ -1.96
LMX1BO60663 AL049874.1-201ENST00000489560 388 ntBASIC2.79□□□□□ -1.96
LMX1BO60663 VN1R104P-201ENST00000505115 1009 ntBASIC2.79□□□□□ -1.96
LMX1BO60663 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC2.79□□□□□ -1.96
LMX1BO60663 MTND3P25-201ENST00000509243 135 ntBASIC2.79□□□□□ -1.96
LMX1BO60663 Y_RNA.711-201ENST00000516993 102 ntBASIC2.79□□□□□ -1.96
LMX1BO60663 AC104237.1-201ENST00000527443 539 ntTSL 4 BASIC2.79□□□□□ -1.96
LMX1BO60663 SNRPGP16-201ENST00000533275 226 ntBASIC2.79□□□□□ -1.96
LMX1BO60663 APAF1-207ENST00000547743 651 ntTSL 3 BASIC2.79□□□□□ -1.96
LMX1BO60663 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC2.79□□□□□ -1.96
LMX1BO60663 MIR3941-201ENST00000582572 103 ntBASIC2.79□□□□□ -1.96
LMX1BO60663 AC080078.3-201ENST00000605407 463 ntBASIC2.79□□□□□ -1.96
LMX1BO60663 AC002044.1-201ENST00000606707 158 ntBASIC2.79□□□□□ -1.96
LMX1BO60663 AC116312.1-201ENST00000606841 314 ntBASIC2.79□□□□□ -1.96
LMX1BO60663 RNU6ATAC35P-201ENST00000609276 444 ntBASIC2.79□□□□□ -1.96
LMX1BO60663 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC2.79□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 87.3 ms