Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 RNU6-1115P-201ENST00000362490 106 ntBASIC3.82□□□□□ -1.8
CBX4O00257 Y_RNA.28-201ENST00000362554 111 ntBASIC3.82□□□□□ -1.8
CBX4O00257 Y_RNA.31-201ENST00000362574 102 ntBASIC3.82□□□□□ -1.8
CBX4O00257 RNU6-490P-201ENST00000362985 107 ntBASIC3.82□□□□□ -1.8
CBX4O00257 RNU6-270P-201ENST00000364131 105 ntBASIC3.82□□□□□ -1.8
CBX4O00257 SNORA33.2-201ENST00000365413 134 ntBASIC3.82□□□□□ -1.8
CBX4O00257 RNU6-898P-201ENST00000365627 104 ntBASIC3.82□□□□□ -1.8
CBX4O00257 AIF1-202ENST00000376049 524 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
CBX4O00257 Z98749.2-208ENST00000381646 500 ntBASIC3.82□□□□□ -1.8
CBX4O00257 SNORA41-201ENST00000384675 132 ntBASIC3.82□□□□□ -1.8
CBX4O00257 MIR521-1-201ENST00000384902 87 ntBASIC3.82□□□□□ -1.8
CBX4O00257 RNU6-308P-201ENST00000390957 107 ntBASIC3.82□□□□□ -1.8
CBX4O00257 AC023051.1-201ENST00000414098 876 ntTSL 5 BASIC3.82□□□□□ -1.8
CBX4O00257 RPS29P4-201ENST00000414733 161 ntBASIC3.82□□□□□ -1.8
CBX4O00257 AL035423.1-201ENST00000420331 213 ntBASIC3.82□□□□□ -1.8
CBX4O00257 AC013470.1-201ENST00000453438 462 ntBASIC3.82□□□□□ -1.8
CBX4O00257 PTP4A1P4-201ENST00000512479 322 ntBASIC3.82□□□□□ -1.8
CBX4O00257 RNU6-327P-201ENST00000516270 127 ntBASIC3.82□□□□□ -1.8
CBX4O00257 SNORA74D-201ENST00000516404 141 ntBASIC3.82□□□□□ -1.8
CBX4O00257 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC3.82□□□□□ -1.8
CBX4O00257 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC3.82□□□□□ -1.8
CBX4O00257 CPDP1-201ENST00000579660 283 ntBASIC3.82□□□□□ -1.8
CBX4O00257 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC3.82□□□□□ -1.8
CBX4O00257 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC3.82□□□□□ -1.8
CBX4O00257 HSPE1P7-201ENST00000604681 321 ntBASIC3.82□□□□□ -1.8
CBX4O00257 AL360085.1-201ENST00000604713 532 ntBASIC3.82□□□□□ -1.8
CBX4O00257 ATP7A-201ENST00000341514 8483 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
CBX4O00257 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
CBX4O00257 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC3.82□□□□□ -1.8
CBX4O00257 MAPK10-373ENST00000641983 6772 ntBASIC3.82□□□□□ -1.8
CBX4O00257 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
CBX4O00257 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC3.82□□□□□ -1.8
CBX4O00257 POLK-201ENST00000241436 5911 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
CBX4O00257 MFSD8-236ENST00000641509 4050 ntBASIC3.81□□□□□ -1.8
CBX4O00257 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
CBX4O00257 RNA5SP322-201ENST00000363617 119 ntBASIC3.81□□□□□ -1.8
CBX4O00257 SNORA22B-201ENST00000383876 138 ntBASIC3.81□□□□□ -1.8
CBX4O00257 RNU6-639P-201ENST00000384074 107 ntBASIC3.81□□□□□ -1.8
CBX4O00257 MIR606-201ENST00000384851 96 ntBASIC3.81□□□□□ -1.8
CBX4O00257 MIR183-201ENST00000384958 110 ntBASIC3.81□□□□□ -1.8
CBX4O00257 RNA5SP424-201ENST00000390988 115 ntBASIC3.81□□□□□ -1.8
CBX4O00257 EIF4EBP2P3-201ENST00000403144 334 ntBASIC3.81□□□□□ -1.8
CBX4O00257 AP000567.1-201ENST00000406413 156 ntBASIC3.81□□□□□ -1.8
CBX4O00257 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC3.81□□□□□ -1.8
CBX4O00257 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC3.81□□□□□ -1.8
CBX4O00257 PMCHL1-202ENST00000423102 261 ntBASIC3.81□□□□□ -1.8
CBX4O00257 AC098831.1-201ENST00000440661 216 ntBASIC3.81□□□□□ -1.8
CBX4O00257 AL035666.1-201ENST00000446195 348 ntBASIC3.81□□□□□ -1.8
CBX4O00257 ZNF92-204ENST00000450302 2957 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
CBX4O00257 NIPA2P5-201ENST00000452282 464 ntBASIC3.81□□□□□ -1.8
CBX4O00257 RPS27AP10-201ENST00000496103 208 ntBASIC3.81□□□□□ -1.8
CBX4O00257 AC022493.2-201ENST00000506122 481 ntBASIC3.81□□□□□ -1.8
CBX4O00257 Y_RNA.661-201ENST00000516003 99 ntBASIC3.81□□□□□ -1.8
CBX4O00257 RNU6-1045P-201ENST00000516321 107 ntBASIC3.81□□□□□ -1.8
CBX4O00257 SNORA70.24-201ENST00000517233 118 ntBASIC3.81□□□□□ -1.8
CBX4O00257 AC005476.1-201ENST00000554427 397 ntBASIC3.81□□□□□ -1.8
CBX4O00257 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC3.81□□□□□ -1.8
CBX4O00257 AC007493.1-202ENST00000567899 517 ntTSL 2 BASIC3.81□□□□□ -1.8
CBX4O00257 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC3.81□□□□□ -1.8
CBX4O00257 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC3.81□□□□□ -1.8
CBX4O00257 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
CBX4O00257 LRRN3-203ENST00000422987 3513 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
CBX4O00257 ADGRL2-211ENST00000370730 6173 ntTSL 5 BASIC3.81□□□□□ -1.8
CBX4O00257 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC3.8□□□□□ -1.8
CBX4O00257 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
CBX4O00257 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
CBX4O00257 ATP13A3-203ENST00000439040 7720 ntAPPRIS P1 TSL 5 BASIC3.8□□□□□ -1.8
CBX4O00257 DST-201ENST00000244364 16742 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
CBX4O00257 RNU6-428P-201ENST00000362942 107 ntBASIC3.8□□□□□ -1.8
CBX4O00257 AC117470.1-201ENST00000381974 330 ntBASIC3.8□□□□□ -1.8
CBX4O00257 MIR518D-201ENST00000385014 87 ntBASIC3.8□□□□□ -1.8
CBX4O00257 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
CBX4O00257 RNU6-174P-201ENST00000410406 106 ntBASIC3.8□□□□□ -1.8
CBX4O00257 RNU6-55P-201ENST00000411092 107 ntBASIC3.8□□□□□ -1.8
CBX4O00257 AC096664.2-201ENST00000411843 406 ntBASIC3.8□□□□□ -1.8
CBX4O00257 LINC01048-201ENST00000414480 511 ntTSL 2 BASIC3.8□□□□□ -1.8
CBX4O00257 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC3.8□□□□□ -1.8
CBX4O00257 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC3.8□□□□□ -1.8
CBX4O00257 MTND2P23-201ENST00000422990 651 ntBASIC3.8□□□□□ -1.8
CBX4O00257 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC3.8□□□□□ -1.8
CBX4O00257 UBE2E2-AS1-202ENST00000430018 499 ntTSL 2 BASIC3.8□□□□□ -1.8
CBX4O00257 ATP5HP2-201ENST00000433885 485 ntBASIC3.8□□□□□ -1.8
CBX4O00257 AC011816.1-201ENST00000441346 546 ntBASIC3.8□□□□□ -1.8
CBX4O00257 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC3.8□□□□□ -1.8
CBX4O00257 SNRPGP3-201ENST00000469405 227 ntBASIC3.8□□□□□ -1.8
CBX4O00257 RPL23AP49-201ENST00000492925 468 ntBASIC3.8□□□□□ -1.8
CBX4O00257 PARP8-211ENST00000505554 3825 ntTSL 5 BASIC3.8□□□□□ -1.8
CBX4O00257 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC3.8□□□□□ -1.8
CBX4O00257 AC074250.1-201ENST00000511117 192 ntBASIC3.8□□□□□ -1.8
CBX4O00257 RN7SKP295-201ENST00000517264 153 ntBASIC3.8□□□□□ -1.8
CBX4O00257 AP005902.1-201ENST00000521358 186 ntBASIC3.8□□□□□ -1.8
CBX4O00257 AC023442.1-201ENST00000531247 422 ntBASIC3.8□□□□□ -1.8
CBX4O00257 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC3.8□□□□□ -1.8
CBX4O00257 AL391261.3-201ENST00000557194 520 ntBASIC3.8□□□□□ -1.8
CBX4O00257 AC012100.2-201ENST00000558317 304 ntTSL 5 BASIC3.8□□□□□ -1.8
CBX4O00257 UBE2Q2P8-201ENST00000560644 102 ntBASIC3.8□□□□□ -1.8
CBX4O00257 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC3.8□□□□□ -1.8
CBX4O00257 AC024153.1-201ENST00000603103 365 ntBASIC3.8□□□□□ -1.8
CBX4O00257 MTND4LP5-201ENST00000605152 292 ntBASIC3.8□□□□□ -1.8
CBX4O00257 BRDTP1-201ENST00000605735 677 ntBASIC3.8□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 107.6 ms