Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 GSTA11P-201ENST00000452866 669 ntBASIC2.3□□□□□ -2.04
FOXA2Q9Y261 AL139109.1-201ENST00000455491 297 ntBASIC2.3□□□□□ -2.04
FOXA2Q9Y261 RPL31P3-201ENST00000458430 332 ntBASIC2.3□□□□□ -2.04
FOXA2Q9Y261 AC090515.1-201ENST00000465295 476 ntBASIC2.3□□□□□ -2.04
FOXA2Q9Y261 AP000852.1-201ENST00000472460 573 ntBASIC2.3□□□□□ -2.04
FOXA2Q9Y261 Z84488.1-201ENST00000476099 530 ntTSL 2 BASIC2.3□□□□□ -2.04
FOXA2Q9Y261 RPL7P43-201ENST00000478876 753 ntBASIC2.3□□□□□ -2.04
FOXA2Q9Y261 AF213884.2-201ENST00000510417 903 ntBASIC2.3□□□□□ -2.04
FOXA2Q9Y261 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC2.3□□□□□ -2.04
FOXA2Q9Y261 AC104136.1-201ENST00000512969 394 ntBASIC2.3□□□□□ -2.04
FOXA2Q9Y261 AC010493.1-201ENST00000513479 292 ntBASIC2.3□□□□□ -2.04
FOXA2Q9Y261 AC097460.1-201ENST00000514624 590 ntTSL 3 BASIC2.3□□□□□ -2.04
FOXA2Q9Y261 SNORA74D-201ENST00000516404 141 ntBASIC2.3□□□□□ -2.04
FOXA2Q9Y261 RNU6-1178P-201ENST00000516674 107 ntBASIC2.3□□□□□ -2.04
FOXA2Q9Y261 MTCO2P4-201ENST00000517968 247 ntBASIC2.3□□□□□ -2.04
FOXA2Q9Y261 AP005902.1-201ENST00000521358 186 ntBASIC2.3□□□□□ -2.04
FOXA2Q9Y261 AF279873.4-202ENST00000521714 511 ntTSL 2 BASIC2.3□□□□□ -2.04
FOXA2Q9Y261 AL356057.1-201ENST00000533798 831 ntBASIC2.3□□□□□ -2.04
FOXA2Q9Y261 HPRT1P3-201ENST00000539521 576 ntBASIC2.3□□□□□ -2.04
FOXA2Q9Y261 CR383656.8-201ENST00000549046 145 ntBASIC2.3□□□□□ -2.04
FOXA2Q9Y261 PSMA3P-201ENST00000555485 635 ntBASIC2.3□□□□□ -2.04
FOXA2Q9Y261 AC105137.2-201ENST00000569073 466 ntBASIC2.3□□□□□ -2.04
FOXA2Q9Y261 MIR3605-201ENST00000583214 100 ntBASIC2.3□□□□□ -2.04
FOXA2Q9Y261 AC023043.3-201ENST00000593113 385 ntBASIC2.3□□□□□ -2.04
FOXA2Q9Y261 AC073539.2-201ENST00000597113 165 ntBASIC2.3□□□□□ -2.04
FOXA2Q9Y261 RPL12P50-201ENST00000603116 116 ntBASIC2.3□□□□□ -2.04
FOXA2Q9Y261 AC073648.5-201ENST00000603502 305 ntBASIC2.3□□□□□ -2.04
FOXA2Q9Y261 AC008536.2-201ENST00000607284 349 ntBASIC2.3□□□□□ -2.04
FOXA2Q9Y261 AC093732.2-201ENST00000607950 274 ntBASIC2.3□□□□□ -2.04
FOXA2Q9Y261 DLEU2_1.1-201ENST00000612089 120 ntBASIC2.3□□□□□ -2.04
FOXA2Q9Y261 DLEU2_1.2-201ENST00000614667 120 ntBASIC2.3□□□□□ -2.04
FOXA2Q9Y261 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC2.3□□□□□ -2.04
FOXA2Q9Y261 uc_338.11-201ENST00000619132 160 ntBASIC2.3□□□□□ -2.04
FOXA2Q9Y261 AL353651.2-201ENST00000635706 559 ntTSL 5 BASIC2.3□□□□□ -2.04
FOXA2Q9Y261 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC2.3□□□□□ -2.04
FOXA2Q9Y261 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC2.3□□□□□ -2.04
FOXA2Q9Y261 HAUS6P2-201ENST00000433254 2404 ntBASIC2.3□□□□□ -2.04
FOXA2Q9Y261 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC2.29□□□□□ -2.04
FOXA2Q9Y261 ZNF66-201ENST00000344519 1745 ntAPPRIS P1 TSL 3 BASIC2.29□□□□□ -2.04
FOXA2Q9Y261 AC131280.1-202ENST00000624067 4211 ntBASIC2.29□□□□□ -2.04
FOXA2Q9Y261 RNU1-52P-201ENST00000384190 164 ntBASIC2.29□□□□□ -2.04
FOXA2Q9Y261 RNU6-45P-201ENST00000384471 107 ntBASIC2.29□□□□□ -2.04
FOXA2Q9Y261 RNU4-46P-201ENST00000410818 138 ntBASIC2.29□□□□□ -2.04
FOXA2Q9Y261 AC064871.1-202ENST00000413954 382 ntTSL 5 BASIC2.29□□□□□ -2.04
FOXA2Q9Y261 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC2.29□□□□□ -2.04
FOXA2Q9Y261 AL138830.2-202ENST00000446358 786 ntTSL 2 BASIC2.29□□□□□ -2.04
FOXA2Q9Y261 IGKV1OR-3-201ENST00000446944 348 ntBASIC2.29□□□□□ -2.04
FOXA2Q9Y261 CYP2C59P-201ENST00000457790 269 ntBASIC2.29□□□□□ -2.04
FOXA2Q9Y261 S100A11P2-201ENST00000467589 312 ntBASIC2.29□□□□□ -2.04
FOXA2Q9Y261 AC010424.1-201ENST00000506336 297 ntBASIC2.29□□□□□ -2.04
FOXA2Q9Y261 AC008526.1-201ENST00000509149 338 ntBASIC2.29□□□□□ -2.04
FOXA2Q9Y261 AC074344.1-201ENST00000512823 224 ntBASIC2.29□□□□□ -2.04
FOXA2Q9Y261 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC2.29□□□□□ -2.04
FOXA2Q9Y261 AC117532.1-201ENST00000514638 323 ntBASIC2.29□□□□□ -2.04
FOXA2Q9Y261 RNU1-104P-201ENST00000517280 175 ntBASIC2.29□□□□□ -2.04
FOXA2Q9Y261 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC2.29□□□□□ -2.04
FOXA2Q9Y261 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC2.29□□□□□ -2.04
FOXA2Q9Y261 CBX3P7-201ENST00000532876 502 ntBASIC2.29□□□□□ -2.04
FOXA2Q9Y261 AL136146.2-201ENST00000534594 494 ntTSL 2 BASIC2.29□□□□□ -2.04
FOXA2Q9Y261 AC009135.1-201ENST00000549303 776 ntTSL 2 BASIC2.29□□□□□ -2.04
FOXA2Q9Y261 MTCO3P13-201ENST00000577757 781 ntBASIC2.29□□□□□ -2.04
FOXA2Q9Y261 AC110760.3-201ENST00000598794 467 ntBASIC2.29□□□□□ -2.04
FOXA2Q9Y261 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC2.29□□□□□ -2.04
FOXA2Q9Y261 AC073410.2-201ENST00000603240 332 ntBASIC2.29□□□□□ -2.04
FOXA2Q9Y261 AL355297.2-201ENST00000604792 129 ntBASIC2.29□□□□□ -2.04
FOXA2Q9Y261 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC2.29□□□□□ -2.04
FOXA2Q9Y261 DLEU1_1.1-201ENST00000618107 190 ntBASIC2.29□□□□□ -2.04
FOXA2Q9Y261 MAPK10-266ENST00000641066 6555 ntBASIC2.29□□□□□ -2.04
FOXA2Q9Y261 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC2.29□□□□□ -2.04
FOXA2Q9Y261 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC2.29□□□□□ -2.04
FOXA2Q9Y261 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC2.28□□□□□ -2.04
FOXA2Q9Y261 MIR26A1-201ENST00000362205 77 ntBASIC2.28□□□□□ -2.04
FOXA2Q9Y261 RNU6-715P-201ENST00000365204 103 ntBASIC2.28□□□□□ -2.04
FOXA2Q9Y261 RNU1-57P-201ENST00000384491 166 ntBASIC2.28□□□□□ -2.04
FOXA2Q9Y261 Y_RNA.553-201ENST00000384670 102 ntBASIC2.28□□□□□ -2.04
FOXA2Q9Y261 MIR128-1-201ENST00000384921 82 ntBASIC2.28□□□□□ -2.04
FOXA2Q9Y261 RNU6-1140P-201ENST00000410517 106 ntBASIC2.28□□□□□ -2.04
FOXA2Q9Y261 AC096664.2-201ENST00000411843 406 ntBASIC2.28□□□□□ -2.04
FOXA2Q9Y261 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC2.28□□□□□ -2.04
FOXA2Q9Y261 AC083900.1-201ENST00000421964 469 ntTSL 2 BASIC2.28□□□□□ -2.04
FOXA2Q9Y261 MTCO2P11-201ENST00000431069 680 ntBASIC2.28□□□□□ -2.04
FOXA2Q9Y261 AC132479.1-201ENST00000449160 144 ntBASIC2.28□□□□□ -2.04
FOXA2Q9Y261 RN7SL297P-201ENST00000483161 293 ntBASIC2.28□□□□□ -2.04
FOXA2Q9Y261 AC079382.1-201ENST00000493346 557 ntBASIC2.28□□□□□ -2.04
FOXA2Q9Y261 AC005920.2-201ENST00000509833 332 ntTSL 3 BASIC2.28□□□□□ -2.04
FOXA2Q9Y261 GTF2H2C-212ENST00000512736 832 ntTSL 1 (best) BASIC2.28□□□□□ -2.04
FOXA2Q9Y261 RN7SKP298-201ENST00000515950 94 ntBASIC2.28□□□□□ -2.04
FOXA2Q9Y261 SNORA43.2-201ENST00000516652 128 ntBASIC2.28□□□□□ -2.04
FOXA2Q9Y261 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC2.28□□□□□ -2.04
FOXA2Q9Y261 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC2.28□□□□□ -2.04
FOXA2Q9Y261 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC2.28□□□□□ -2.04
FOXA2Q9Y261 AC136619.2-201ENST00000563361 631 ntBASIC2.28□□□□□ -2.04
FOXA2Q9Y261 MIR4703-201ENST00000577728 79 ntBASIC2.28□□□□□ -2.04
FOXA2Q9Y261 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC2.28□□□□□ -2.04
FOXA2Q9Y261 MIR3200-201ENST00000580767 85 ntBASIC2.28□□□□□ -2.04
FOXA2Q9Y261 HNRNPDLP4-201ENST00000605144 301 ntBASIC2.28□□□□□ -2.04
FOXA2Q9Y261 AL359198.2-201ENST00000611836 194 ntBASIC2.28□□□□□ -2.04
FOXA2Q9Y261 AC091834.1-201ENST00000614543 472 ntBASIC2.28□□□□□ -2.04
FOXA2Q9Y261 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC2.28□□□□□ -2.04
FOXA2Q9Y261 NCRUPAR_2.1-201ENST00000616308 99 ntBASIC2.28□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 112.7 ms