Protein–RNA interactions for Protein: Q9ULD4

BRPF3, Bromodomain and PHD finger-containing protein 3, humanhuman

Predictions only

Length 1,205 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRPF3Q9ULD4 PHEX-201ENST00000379374 6172 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
BRPF3Q9ULD4 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC4.86□□□□□ -1.63
BRPF3Q9ULD4 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC4.86□□□□□ -1.63
BRPF3Q9ULD4 PPIAP31-201ENST00000405422 495 ntBASIC4.86□□□□□ -1.63
BRPF3Q9ULD4 AC016397.1-201ENST00000412463 242 ntBASIC4.86□□□□□ -1.63
BRPF3Q9ULD4 AL159987.2-201ENST00000432754 307 ntBASIC4.86□□□□□ -1.63
BRPF3Q9ULD4 Z82210.1-201ENST00000440037 231 ntBASIC4.86□□□□□ -1.63
BRPF3Q9ULD4 RPS3AP46-201ENST00000448352 682 ntBASIC4.86□□□□□ -1.63
BRPF3Q9ULD4 NUTF2P3-201ENST00000448540 384 ntBASIC4.86□□□□□ -1.63
BRPF3Q9ULD4 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
BRPF3Q9ULD4 OR2AQ1P-201ENST00000451972 200 ntBASIC4.86□□□□□ -1.63
BRPF3Q9ULD4 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC4.86□□□□□ -1.63
BRPF3Q9ULD4 IGKV2-38-201ENST00000517443 247 ntBASIC4.86□□□□□ -1.63
BRPF3Q9ULD4 AC064807.2-201ENST00000521188 672 ntTSL 3 BASIC4.86□□□□□ -1.63
BRPF3Q9ULD4 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC4.86□□□□□ -1.63
BRPF3Q9ULD4 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC4.86□□□□□ -1.63
BRPF3Q9ULD4 MIR5696-201ENST00000578474 85 ntBASIC4.86□□□□□ -1.63
BRPF3Q9ULD4 MIR5701-3-201ENST00000578890 82 ntBASIC4.86□□□□□ -1.63
BRPF3Q9ULD4 MIR5701-1-201ENST00000585138 82 ntBASIC4.86□□□□□ -1.63
BRPF3Q9ULD4 AC136601.2-201ENST00000604356 474 ntBASIC4.86□□□□□ -1.63
BRPF3Q9ULD4 MIR5701-2-201ENST00000615634 82 ntBASIC4.86□□□□□ -1.63
BRPF3Q9ULD4 AC099506.2-201ENST00000623074 221 ntBASIC4.86□□□□□ -1.63
BRPF3Q9ULD4 CCNH-206ENST00000508855 2391 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
BRPF3Q9ULD4 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC4.86□□□□□ -1.63
BRPF3Q9ULD4 DMD-207ENST00000378677 13932 ntAPPRIS ALT2 TSL 5 BASIC4.86□□□□□ -1.63
BRPF3Q9ULD4 IMPG2-201ENST00000193391 8337 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
BRPF3Q9ULD4 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
BRPF3Q9ULD4 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
BRPF3Q9ULD4 MTND5P9-201ENST00000503854 1755 ntBASIC4.86□□□□□ -1.63
BRPF3Q9ULD4 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC4.86□□□□□ -1.63
BRPF3Q9ULD4 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC4.86□□□□□ -1.63
BRPF3Q9ULD4 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC4.85□□□□□ -1.63
BRPF3Q9ULD4 ZNF705A-201ENST00000359286 3455 ntAPPRIS P1 TSL 2 BASIC4.85□□□□□ -1.63
BRPF3Q9ULD4 AC090740.1-201ENST00000623193 2262 ntBASIC4.85□□□□□ -1.63
BRPF3Q9ULD4 ERBIN-203ENST00000380938 4701 ntTSL 2 BASIC4.85□□□□□ -1.63
BRPF3Q9ULD4 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
BRPF3Q9ULD4 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC4.85□□□□□ -1.63
BRPF3Q9ULD4 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC4.85□□□□□ -1.63
BRPF3Q9ULD4 AC092423.1-201ENST00000430165 186 ntBASIC4.85□□□□□ -1.63
BRPF3Q9ULD4 DYNLT3P2-201ENST00000442517 295 ntBASIC4.85□□□□□ -1.63
BRPF3Q9ULD4 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC4.85□□□□□ -1.63
BRPF3Q9ULD4 MTCO3P8-201ENST00000453691 755 ntBASIC4.85□□□□□ -1.63
BRPF3Q9ULD4 AC010618.1-201ENST00000469924 477 ntBASIC4.85□□□□□ -1.63
BRPF3Q9ULD4 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC4.85□□□□□ -1.63
BRPF3Q9ULD4 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC4.85□□□□□ -1.63
BRPF3Q9ULD4 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC4.85□□□□□ -1.63
BRPF3Q9ULD4 VN1R91P-201ENST00000594377 169 ntBASIC4.85□□□□□ -1.63
BRPF3Q9ULD4 IPO5P1-202ENST00000600039 287 ntBASIC4.85□□□□□ -1.63
BRPF3Q9ULD4 SRGNP1-201ENST00000603392 451 ntBASIC4.85□□□□□ -1.63
BRPF3Q9ULD4 AC083809.1-201ENST00000615051 472 ntBASIC4.85□□□□□ -1.63
BRPF3Q9ULD4 ADGRG2-205ENST00000357991 4661 ntAPPRIS P3 TSL 1 (best) BASIC4.85□□□□□ -1.63
BRPF3Q9ULD4 OR56A1-203ENST00000641900 8448 ntAPPRIS P1 BASIC4.85□□□□□ -1.63
BRPF3Q9ULD4 ADAM28-201ENST00000265769 7052 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
BRPF3Q9ULD4 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
BRPF3Q9ULD4 RNU6-595P-201ENST00000363944 107 ntBASIC4.84□□□□□ -1.63
BRPF3Q9ULD4 AC068538.1-201ENST00000376856 336 ntBASIC4.84□□□□□ -1.63
BRPF3Q9ULD4 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
BRPF3Q9ULD4 SNRPEP9-201ENST00000436794 238 ntBASIC4.84□□□□□ -1.63
BRPF3Q9ULD4 CXorf51B-201ENST00000438525 436 ntAPPRIS P1 TSL 2 BASIC4.84□□□□□ -1.63
BRPF3Q9ULD4 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC4.84□□□□□ -1.63
BRPF3Q9ULD4 RPS3AP12-201ENST00000443616 753 ntBASIC4.84□□□□□ -1.63
BRPF3Q9ULD4 AC073910.1-201ENST00000445047 438 ntBASIC4.84□□□□□ -1.63
BRPF3Q9ULD4 HIGD1AP2-201ENST00000446367 280 ntBASIC4.84□□□□□ -1.63
BRPF3Q9ULD4 PCNPP5-201ENST00000452246 481 ntBASIC4.84□□□□□ -1.63
BRPF3Q9ULD4 AC013470.1-201ENST00000453438 462 ntBASIC4.84□□□□□ -1.63
BRPF3Q9ULD4 PTP4A2-203ENST00000470404 575 ntTSL 3 BASIC4.84□□□□□ -1.63
BRPF3Q9ULD4 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC4.84□□□□□ -1.63
BRPF3Q9ULD4 RNU6-612P-201ENST00000516909 102 ntBASIC4.84□□□□□ -1.63
BRPF3Q9ULD4 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
BRPF3Q9ULD4 UTS2-201ENST00000054668 420 ntAPPRIS P4 TSL 1 (best) BASIC4.84□□□□□ -1.63
BRPF3Q9ULD4 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC4.84□□□□□ -1.63
BRPF3Q9ULD4 AL160314.2-204ENST00000554730 380 ntTSL 5 BASIC4.84□□□□□ -1.63
BRPF3Q9ULD4 AC025884.1-201ENST00000556034 378 ntBASIC4.84□□□□□ -1.63
BRPF3Q9ULD4 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC4.84□□□□□ -1.63
BRPF3Q9ULD4 MIR8059-201ENST00000620427 81 ntBASIC4.84□□□□□ -1.63
BRPF3Q9ULD4 MIR8062-201ENST00000621515 85 ntBASIC4.84□□□□□ -1.63
BRPF3Q9ULD4 AL773545.4-201ENST00000637262 310 ntBASIC4.84□□□□□ -1.63
BRPF3Q9ULD4 AL513478.4-201ENST00000641636 310 ntBASIC4.84□□□□□ -1.63
BRPF3Q9ULD4 MS4A14-201ENST00000300187 2997 ntAPPRIS P3 TSL 1 (best) BASIC4.84□□□□□ -1.63
BRPF3Q9ULD4 N4BP2L2-202ENST00000357505 2917 ntTSL 2 BASIC4.84□□□□□ -1.63
BRPF3Q9ULD4 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC4.84□□□□□ -1.63
BRPF3Q9ULD4 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC4.84□□□□□ -1.64
BRPF3Q9ULD4 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC4.84□□□□□ -1.64
BRPF3Q9ULD4 C2orf78-201ENST00000409561 3045 ntAPPRIS P1 TSL 2 BASIC4.83□□□□□ -1.64
BRPF3Q9ULD4 UBE3A-202ENST00000397954 2873 ntTSL 5 BASIC4.83□□□□□ -1.64
BRPF3Q9ULD4 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
BRPF3Q9ULD4 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
BRPF3Q9ULD4 RNU6-428P-201ENST00000362942 107 ntBASIC4.83□□□□□ -1.64
BRPF3Q9ULD4 C1orf100-202ENST00000366537 483 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
BRPF3Q9ULD4 RNU6-700P-201ENST00000391043 107 ntBASIC4.83□□□□□ -1.64
BRPF3Q9ULD4 RPL21P1-201ENST00000399532 476 ntBASIC4.83□□□□□ -1.64
BRPF3Q9ULD4 RN7SKP53-201ENST00000411337 315 ntBASIC4.83□□□□□ -1.64
BRPF3Q9ULD4 AC007098.1-201ENST00000420122 367 ntBASIC4.83□□□□□ -1.64
BRPF3Q9ULD4 RPL17P36-201ENST00000420302 549 ntBASIC4.83□□□□□ -1.64
BRPF3Q9ULD4 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC4.83□□□□□ -1.64
BRPF3Q9ULD4 AC098614.2-201ENST00000426040 255 ntBASIC4.83□□□□□ -1.64
BRPF3Q9ULD4 MTND3P9-201ENST00000429526 346 ntBASIC4.83□□□□□ -1.64
BRPF3Q9ULD4 AL358472.1-201ENST00000431295 329 ntBASIC4.83□□□□□ -1.64
BRPF3Q9ULD4 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC4.83□□□□□ -1.64
BRPF3Q9ULD4 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC4.83□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 97.3 ms