Protein–RNA interactions for Protein: Q9NT62

ATG3, Ubiquitin-like-conjugating enzyme ATG3, humanhuman

Predictions only

Length 314 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG3Q9NT62 AL603910.2-201ENST00000407268 136 ntBASIC4.82□□□□□ -1.64
ATG3Q9NT62 RNU4-78P-201ENST00000410940 126 ntBASIC4.82□□□□□ -1.64
ATG3Q9NT62 AL139156.1-201ENST00000412785 841 ntBASIC4.82□□□□□ -1.64
ATG3Q9NT62 RPL21P24-201ENST00000413752 448 ntBASIC4.82□□□□□ -1.64
ATG3Q9NT62 AC092809.3-201ENST00000415453 231 ntBASIC4.82□□□□□ -1.64
ATG3Q9NT62 AC004870.4-201ENST00000424359 360 ntTSL 2 BASIC4.82□□□□□ -1.64
ATG3Q9NT62 UBE2V1P4-201ENST00000425374 344 ntBASIC4.82□□□□□ -1.64
ATG3Q9NT62 AC115115.1-201ENST00000449927 248 ntBASIC4.82□□□□□ -1.64
ATG3Q9NT62 AL645939.1-201ENST00000453429 797 ntBASIC4.82□□□□□ -1.64
ATG3Q9NT62 SNORD105B-201ENST00000458770 79 ntBASIC4.82□□□□□ -1.64
ATG3Q9NT62 RPS27AP1-201ENST00000475545 471 ntBASIC4.82□□□□□ -1.64
ATG3Q9NT62 S100A11P1-201ENST00000477525 312 ntBASIC4.82□□□□□ -1.64
ATG3Q9NT62 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC4.82□□□□□ -1.64
ATG3Q9NT62 RNA5SP208-201ENST00000516156 78 ntBASIC4.82□□□□□ -1.64
ATG3Q9NT62 Vault.1-201ENST00000516474 102 ntBASIC4.82□□□□□ -1.64
ATG3Q9NT62 HMGN1P28-201ENST00000521340 364 ntBASIC4.82□□□□□ -1.64
ATG3Q9NT62 AC104576.1-201ENST00000524225 88 ntBASIC4.82□□□□□ -1.64
ATG3Q9NT62 GNRHR2P1-201ENST00000555315 631 ntBASIC4.82□□□□□ -1.64
ATG3Q9NT62 AC012119.1-201ENST00000603184 222 ntBASIC4.82□□□□□ -1.64
ATG3Q9NT62 AL137849.1-201ENST00000604767 169 ntBASIC4.82□□□□□ -1.64
ATG3Q9NT62 AC006329.2-201ENST00000611491 394 ntBASIC4.82□□□□□ -1.64
ATG3Q9NT62 MFN1-201ENST00000263969 2754 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
ATG3Q9NT62 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
ATG3Q9NT62 ATP8B4-201ENST00000284509 5676 ntAPPRIS P1 TSL 5 BASIC4.82□□□□□ -1.64
ATG3Q9NT62 KYNU-201ENST00000264170 15316 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
ATG3Q9NT62 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC4.82□□□□□ -1.64
ATG3Q9NT62 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
ATG3Q9NT62 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC4.82□□□□□ -1.64
ATG3Q9NT62 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC4.81□□□□□ -1.64
ATG3Q9NT62 RNY1P16-201ENST00000363063 111 ntBASIC4.81□□□□□ -1.64
ATG3Q9NT62 RNU4-50P-201ENST00000364361 141 ntBASIC4.81□□□□□ -1.64
ATG3Q9NT62 Y_RNA.269-201ENST00000364685 89 ntBASIC4.81□□□□□ -1.64
ATG3Q9NT62 RNU6-1329P-201ENST00000365664 107 ntBASIC4.81□□□□□ -1.64
ATG3Q9NT62 RNU6-708P-201ENST00000384217 107 ntBASIC4.81□□□□□ -1.64
ATG3Q9NT62 RNU6-754P-201ENST00000391166 107 ntBASIC4.81□□□□□ -1.64
ATG3Q9NT62 Z92545.1-201ENST00000411782 234 ntBASIC4.81□□□□□ -1.64
ATG3Q9NT62 USP9YP7-201ENST00000436723 430 ntBASIC4.81□□□□□ -1.64
ATG3Q9NT62 CYCSP32-201ENST00000440548 321 ntBASIC4.81□□□□□ -1.64
ATG3Q9NT62 AC098831.1-201ENST00000440661 216 ntBASIC4.81□□□□□ -1.64
ATG3Q9NT62 USP9YP32-201ENST00000452432 430 ntBASIC4.81□□□□□ -1.64
ATG3Q9NT62 AC018437.1-201ENST00000492214 406 ntBASIC4.81□□□□□ -1.64
ATG3Q9NT62 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC4.81□□□□□ -1.64
ATG3Q9NT62 Y_RNA.689-201ENST00000516589 107 ntBASIC4.81□□□□□ -1.64
ATG3Q9NT62 RNU4ATAC6P-201ENST00000516592 126 ntBASIC4.81□□□□□ -1.64
ATG3Q9NT62 AC013762.1-201ENST00000531136 467 ntTSL 3 BASIC4.81□□□□□ -1.64
ATG3Q9NT62 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC4.81□□□□□ -1.64
ATG3Q9NT62 AC107016.1-201ENST00000550463 337 ntBASIC4.81□□□□□ -1.64
ATG3Q9NT62 AC097467.3-205ENST00000597955 594 ntTSL 5 BASIC4.81□□□□□ -1.64
ATG3Q9NT62 AC006557.5-201ENST00000603126 811 ntBASIC4.81□□□□□ -1.64
ATG3Q9NT62 AC025946.2-201ENST00000603398 234 ntBASIC4.81□□□□□ -1.64
ATG3Q9NT62 AC005000.2-201ENST00000605468 310 ntBASIC4.81□□□□□ -1.64
ATG3Q9NT62 MIR1244-1-201ENST00000612829 85 ntBASIC4.81□□□□□ -1.64
ATG3Q9NT62 AL591424.2-201ENST00000617023 128 ntBASIC4.81□□□□□ -1.64
ATG3Q9NT62 MIR1244-3-201ENST00000635744 85 ntBASIC4.81□□□□□ -1.64
ATG3Q9NT62 MIR1244-2-201ENST00000636449 85 ntBASIC4.81□□□□□ -1.64
ATG3Q9NT62 MIR1244-4-202ENST00000636813 85 ntBASIC4.81□□□□□ -1.64
ATG3Q9NT62 AL450472.1-202ENST00000637286 180 ntBASIC4.81□□□□□ -1.64
ATG3Q9NT62 FAM35DP-201ENST00000323387 2712 ntBASIC4.81□□□□□ -1.64
ATG3Q9NT62 HERC4-204ENST00000395198 4445 ntAPPRIS ALT1 TSL 1 (best) BASIC4.81□□□□□ -1.64
ATG3Q9NT62 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
ATG3Q9NT62 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
ATG3Q9NT62 OR5H14-202ENST00000641380 7323 ntAPPRIS P1 BASIC4.81□□□□□ -1.64
ATG3Q9NT62 CFTR-201ENST00000003084 6132 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
ATG3Q9NT62 OR56A1-203ENST00000641900 8448 ntAPPRIS P1 BASIC4.8□□□□□ -1.64
ATG3Q9NT62 LRRC39-204ENST00000620882 1951 ntTSL 5 BASIC4.8□□□□□ -1.64
ATG3Q9NT62 AL365440.1-201ENST00000436135 2167 ntBASIC4.8□□□□□ -1.64
ATG3Q9NT62 RNU6-611P-201ENST00000384276 104 ntBASIC4.8□□□□□ -1.64
ATG3Q9NT62 Y_RNA.471-201ENST00000384312 102 ntBASIC4.8□□□□□ -1.64
ATG3Q9NT62 NDUFB4P4-201ENST00000404822 243 ntBASIC4.8□□□□□ -1.64
ATG3Q9NT62 RNU6-1140P-201ENST00000410517 106 ntBASIC4.8□□□□□ -1.64
ATG3Q9NT62 RN7SKP177-201ENST00000410567 355 ntBASIC4.8□□□□□ -1.64
ATG3Q9NT62 UBE2FP1-201ENST00000416536 447 ntBASIC4.8□□□□□ -1.64
ATG3Q9NT62 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC4.8□□□□□ -1.64
ATG3Q9NT62 AC011742.1-201ENST00000431448 434 ntBASIC4.8□□□□□ -1.64
ATG3Q9NT62 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC4.8□□□□□ -1.64
ATG3Q9NT62 AL121760.1-201ENST00000447206 346 ntTSL 2 BASIC4.8□□□□□ -1.64
ATG3Q9NT62 HMGN2P21-201ENST00000447764 270 ntBASIC4.8□□□□□ -1.64
ATG3Q9NT62 AC013470.1-201ENST00000453438 462 ntBASIC4.8□□□□□ -1.64
ATG3Q9NT62 RNU6-27P-201ENST00000516146 107 ntBASIC4.8□□□□□ -1.64
ATG3Q9NT62 AC100870.1-201ENST00000522035 505 ntBASIC4.8□□□□□ -1.64
ATG3Q9NT62 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC4.8□□□□□ -1.64
ATG3Q9NT62 AL360157.1-201ENST00000565962 87 ntBASIC4.8□□□□□ -1.64
ATG3Q9NT62 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
ATG3Q9NT62 UTP20-201ENST00000261637 9025 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
ATG3Q9NT62 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC4.8□□□□□ -1.64
ATG3Q9NT62 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
ATG3Q9NT62 LINC01505-206ENST00000637046 4266 ntTSL 5 BASIC4.8□□□□□ -1.64
ATG3Q9NT62 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
ATG3Q9NT62 SLAIN2-205ENST00000512093 4219 ntTSL 5 BASIC4.79□□□□□ -1.64
ATG3Q9NT62 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC4.79□□□□□ -1.64
ATG3Q9NT62 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC4.79□□□□□ -1.64
ATG3Q9NT62 RNU6-596P-201ENST00000365395 98 ntBASIC4.79□□□□□ -1.64
ATG3Q9NT62 SNORD73A-201ENST00000386062 65 ntBASIC4.79□□□□□ -1.64
ATG3Q9NT62 RNU6-821P-201ENST00000390995 107 ntBASIC4.79□□□□□ -1.64
ATG3Q9NT62 U3.42-201ENST00000408746 214 ntBASIC4.79□□□□□ -1.64
ATG3Q9NT62 RPL35AP22-201ENST00000436855 335 ntBASIC4.79□□□□□ -1.64
ATG3Q9NT62 RPL23AP22-201ENST00000437556 453 ntBASIC4.79□□□□□ -1.64
ATG3Q9NT62 RPEP5-201ENST00000441137 268 ntBASIC4.79□□□□□ -1.64
ATG3Q9NT62 AC010975.1-201ENST00000443301 669 ntTSL 3 BASIC4.79□□□□□ -1.64
ATG3Q9NT62 AL138752.1-201ENST00000452964 351 ntBASIC4.79□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 212.3 ms