Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 AL121603.1-201ENST00000553815 142 ntBASIC5.34□□□□□ -1.55
LRCH3Q96II8 AC034238.1-215ENST00000609792 219 ntTSL 5 BASIC5.34□□□□□ -1.55
LRCH3Q96II8 BX005214.3-202ENST00000619809 325 ntBASIC5.34□□□□□ -1.55
LRCH3Q96II8 AL121890.5-201ENST00000620848 304 ntBASIC5.34□□□□□ -1.55
LRCH3Q96II8 AL136164.4-201ENST00000625013 2135 ntBASIC5.34□□□□□ -1.55
LRCH3Q96II8 U6.99-201ENST00000637524 83 ntBASIC5.34□□□□□ -1.55
LRCH3Q96II8 KDM3B-209ENST00000542866 3634 ntTSL 2 BASIC5.34□□□□□ -1.55
LRCH3Q96II8 SMC2-203ENST00000374793 5909 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
LRCH3Q96II8 OR6C4-203ENST00000641851 4989 ntAPPRIS P1 BASIC5.34□□□□□ -1.55
LRCH3Q96II8 ZNF681-201ENST00000402377 6497 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
LRCH3Q96II8 OR56B2P-202ENST00000641377 2453 ntBASIC5.34□□□□□ -1.56
LRCH3Q96II8 A1CF-207ENST00000395495 9400 ntTSL 5 BASIC5.34□□□□□ -1.56
LRCH3Q96II8 SLC16A9-201ENST00000395347 3646 ntAPPRIS P1 TSL 2 BASIC5.34□□□□□ -1.56
LRCH3Q96II8 AL596211.1-201ENST00000569873 2277 ntBASIC5.34□□□□□ -1.56
LRCH3Q96II8 ZNF525-202ENST00000474037 3890 ntAPPRIS P1 TSL 5 BASIC5.33□□□□□ -1.56
LRCH3Q96II8 CPSF2-201ENST00000298875 13035 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
LRCH3Q96II8 EPHA3-202ENST00000452448 2546 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
LRCH3Q96II8 AL359693.1-201ENST00000614959 2407 ntBASIC5.33□□□□□ -1.56
LRCH3Q96II8 DDX4-204ENST00000505374 2884 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
LRCH3Q96II8 RNA5SP187-201ENST00000384400 119 ntBASIC5.33□□□□□ -1.56
LRCH3Q96II8 RPS20P14-201ENST00000412545 360 ntBASIC5.33□□□□□ -1.56
LRCH3Q96II8 AL590999.1-205ENST00000420293 440 ntTSL 3 BASIC5.33□□□□□ -1.56
LRCH3Q96II8 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC5.33□□□□□ -1.56
LRCH3Q96II8 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC5.33□□□□□ -1.56
LRCH3Q96II8 UQCRHP4-201ENST00000471686 272 ntBASIC5.33□□□□□ -1.56
LRCH3Q96II8 Y_RNA.692-201ENST00000516627 105 ntBASIC5.33□□□□□ -1.56
LRCH3Q96II8 THEM7P-202ENST00000525689 764 ntTSL 3 BASIC5.33□□□□□ -1.56
LRCH3Q96II8 MIR7853-201ENST00000584820 132 ntBASIC5.33□□□□□ -1.56
LRCH3Q96II8 AP005432.2-201ENST00000608162 586 ntBASIC5.33□□□□□ -1.56
LRCH3Q96II8 NCOA1-206ENST00000407230 4745 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
LRCH3Q96II8 EXOC1-202ENST00000349598 3248 ntAPPRIS ALT1 TSL 2 BASIC5.33□□□□□ -1.56
LRCH3Q96II8 KTN1-202ENST00000395308 4134 ntAPPRIS ALT2 TSL 1 (best) BASIC5.33□□□□□ -1.56
LRCH3Q96II8 CDH19-201ENST00000262150 6341 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
LRCH3Q96II8 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
LRCH3Q96II8 ZEB1-219ENST00000560721 3368 ntAPPRIS ALT2 TSL 2 BASIC5.33□□□□□ -1.56
LRCH3Q96II8 SPATA5-201ENST00000274008 8137 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
LRCH3Q96II8 LRP1B-201ENST00000389484 16535 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
LRCH3Q96II8 MIA3-203ENST00000344922 8142 ntAPPRIS P2 TSL 5 BASIC5.32□□□□□ -1.56
LRCH3Q96II8 AC010186.3-201ENST00000537616 2508 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
LRCH3Q96II8 AC125336.1-201ENST00000508893 2827 ntBASIC5.32□□□□□ -1.56
LRCH3Q96II8 RNU6-942P-201ENST00000363002 107 ntBASIC5.32□□□□□ -1.56
LRCH3Q96II8 RNU6-640P-201ENST00000363693 105 ntBASIC5.32□□□□□ -1.56
LRCH3Q96II8 U3.9-201ENST00000363823 204 ntBASIC5.32□□□□□ -1.56
LRCH3Q96II8 MIR483-201ENST00000385070 76 ntBASIC5.32□□□□□ -1.56
LRCH3Q96II8 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
LRCH3Q96II8 RNA5SP317-201ENST00000410176 116 ntBASIC5.32□□□□□ -1.56
LRCH3Q96II8 RNA5SP311-201ENST00000411290 116 ntBASIC5.32□□□□□ -1.56
LRCH3Q96II8 RPS26P47-201ENST00000427219 348 ntBASIC5.32□□□□□ -1.56
LRCH3Q96II8 AL136140.1-201ENST00000436113 473 ntTSL 3 BASIC5.32□□□□□ -1.56
LRCH3Q96II8 AC068489.1-201ENST00000453706 261 ntTSL 5 BASIC5.32□□□□□ -1.56
LRCH3Q96II8 AC016632.1-201ENST00000503994 196 ntBASIC5.32□□□□□ -1.56
LRCH3Q96II8 AC091912.1-201ENST00000511351 248 ntBASIC5.32□□□□□ -1.56
LRCH3Q96II8 RNA5SP315-201ENST00000516340 116 ntBASIC5.32□□□□□ -1.56
LRCH3Q96II8 RNA5SP312-201ENST00000517068 116 ntBASIC5.32□□□□□ -1.56
LRCH3Q96II8 AC009623.2-201ENST00000522524 465 ntTSL 3 BASIC5.32□□□□□ -1.56
LRCH3Q96II8 AC005868.1-201ENST00000536421 331 ntBASIC5.32□□□□□ -1.56
LRCH3Q96II8 MIR4716-201ENST00000579628 84 ntBASIC5.32□□□□□ -1.56
LRCH3Q96II8 AC004147.1-201ENST00000580658 299 ntTSL 3 BASIC5.32□□□□□ -1.56
LRCH3Q96II8 LINC01289-201ENST00000519550 3712 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
LRCH3Q96II8 GHR-207ENST00000537449 4419 ntAPPRIS P1 TSL 5 BASIC5.32□□□□□ -1.56
LRCH3Q96II8 POF1B-201ENST00000262753 3941 ntAPPRIS P3 TSL 1 (best) BASIC5.32□□□□□ -1.56
LRCH3Q96II8 NCOA3-203ENST00000372004 7939 ntAPPRIS ALT2 TSL 1 (best) BASIC5.32□□□□□ -1.56
LRCH3Q96II8 CTAGE5-207ENST00000396165 3071 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
LRCH3Q96II8 PLCXD3-201ENST00000328457 7538 ntAPPRIS P1 TSL 5 BASIC5.32□□□□□ -1.56
LRCH3Q96II8 GABRA3-201ENST00000370314 3712 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
LRCH3Q96II8 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
LRCH3Q96II8 ADCY10-201ENST00000367848 5055 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
LRCH3Q96II8 AC090826.1-202ENST00000562009 3337 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
LRCH3Q96II8 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC5.31□□□□□ -1.56
LRCH3Q96II8 EIF4EBP2-201ENST00000373218 7257 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
LRCH3Q96II8 HNMT-202ENST00000280097 3295 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
LRCH3Q96II8 AC092376.2-201ENST00000622621 4116 ntBASIC5.31□□□□□ -1.56
LRCH3Q96II8 TTBK2-201ENST00000267890 10905 ntAPPRIS P2 TSL 5 BASIC5.31□□□□□ -1.56
LRCH3Q96II8 SNORD58C-201ENST00000365223 64 ntBASIC5.31□□□□□ -1.56
LRCH3Q96II8 SNORA70E-201ENST00000384492 135 ntBASIC5.31□□□□□ -1.56
LRCH3Q96II8 Y_RNA.558-201ENST00000384685 113 ntBASIC5.31□□□□□ -1.56
LRCH3Q96II8 MIR549A-201ENST00000385268 96 ntBASIC5.31□□□□□ -1.56
LRCH3Q96II8 RNA5SP397-201ENST00000391323 118 ntBASIC5.31□□□□□ -1.56
LRCH3Q96II8 AL451107.1-201ENST00000416310 408 ntTSL 2 BASIC5.31□□□□□ -1.56
LRCH3Q96II8 YPEL5P1-201ENST00000419731 367 ntBASIC5.31□□□□□ -1.56
LRCH3Q96II8 Z82209.1-201ENST00000422141 2135 ntBASIC5.31□□□□□ -1.56
LRCH3Q96II8 GSTA9P-202ENST00000448991 521 ntTSL 3 BASIC5.31□□□□□ -1.56
LRCH3Q96II8 AL592431.1-201ENST00000451090 317 ntTSL 3 BASIC5.31□□□□□ -1.56
LRCH3Q96II8 TRBV2-201ENST00000455382 421 ntAPPRIS P1 BASIC5.31□□□□□ -1.56
LRCH3Q96II8 AL591473.1-201ENST00000464297 313 ntBASIC5.31□□□□□ -1.56
LRCH3Q96II8 RN7SL303P-201ENST00000469773 251 ntBASIC5.31□□□□□ -1.56
LRCH3Q96II8 AC006199.1-201ENST00000548728 219 ntBASIC5.31□□□□□ -1.56
LRCH3Q96II8 CYCSP39-201ENST00000565821 309 ntBASIC5.31□□□□□ -1.56
LRCH3Q96II8 AL591034.3-201ENST00000605511 685 ntBASIC5.31□□□□□ -1.56
LRCH3Q96II8 AC069200.1-201ENST00000609511 323 ntBASIC5.31□□□□□ -1.56
LRCH3Q96II8 ZNF26-201ENST00000328654 17601 ntAPPRIS P3 TSL 1 (best) BASIC5.31□□□□□ -1.56
LRCH3Q96II8 PTPRB-202ENST00000334414 12316 ntAPPRIS P4 TSL 1 (best) BASIC5.31□□□□□ -1.56
LRCH3Q96II8 RGS17-202ENST00000367225 7773 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
LRCH3Q96II8 ARAP2-210ENST00000618163 2592 ntTSL 5 BASIC5.31□□□□□ -1.56
LRCH3Q96II8 ITGAV-204ENST00000433736 3288 ntAPPRIS ALT2 TSL 2 BASIC5.31□□□□□ -1.56
LRCH3Q96II8 ADAM5-202ENST00000399789 1942 ntBASIC5.31□□□□□ -1.56
LRCH3Q96II8 C6orf10-210ENST00000617061 1904 ntAPPRIS ALT2 TSL 5 BASIC5.31□□□□□ -1.56
LRCH3Q96II8 R3HCC1L-201ENST00000298999 3379 ntAPPRIS P1 TSL 5 BASIC5.3□□□□□ -1.56
LRCH3Q96II8 ZNF230-201ENST00000429154 4115 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
LRCH3Q96II8 ZNF534-202ENST00000332323 2086 ntAPPRIS P4 TSL 1 (best) BASIC5.3□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 151.9 ms