Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 AC084756.1-201ENST00000558237 606 ntTSL 5 BASIC2.27□□□□□ -2.05
ZNF540Q8NDQ6 AL035425.2-201ENST00000563887 563 ntAPPRIS P1 TSL 4 BASIC2.27□□□□□ -2.05
ZNF540Q8NDQ6 MIR3146-201ENST00000580367 79 ntBASIC2.27□□□□□ -2.05
ZNF540Q8NDQ6 AP001004.1-201ENST00000582468 324 ntBASIC2.27□□□□□ -2.05
ZNF540Q8NDQ6 AL512625.3-207ENST00000609749 477 ntTSL 3 BASIC2.27□□□□□ -2.05
ZNF540Q8NDQ6 AC013412.1-201ENST00000610687 192 ntBASIC2.27□□□□□ -2.05
ZNF540Q8NDQ6 uc_338.12-201ENST00000616344 181 ntBASIC2.27□□□□□ -2.05
ZNF540Q8NDQ6 AL589994.2-201ENST00000621124 579 ntBASIC2.27□□□□□ -2.05
ZNF540Q8NDQ6 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC2.27□□□□□ -2.05
ZNF540Q8NDQ6 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC2.27□□□□□ -2.05
ZNF540Q8NDQ6 AC091931.1-201ENST00000623488 728 ntBASIC2.27□□□□□ -2.05
ZNF540Q8NDQ6 AC006927.3-201ENST00000638789 384 ntBASIC2.27□□□□□ -2.05
ZNF540Q8NDQ6 ATM-228ENST00000639240 498 ntTSL 5 BASIC2.27□□□□□ -2.05
ZNF540Q8NDQ6 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC2.27□□□□□ -2.05
ZNF540Q8NDQ6 ATM-230ENST00000640388 578 ntTSL 5 BASIC2.27□□□□□ -2.05
ZNF540Q8NDQ6 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC2.27□□□□□ -2.05
ZNF540Q8NDQ6 AC092104.1-201ENST00000497346 1441 ntBASIC2.26□□□□□ -2.05
ZNF540Q8NDQ6 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC2.26□□□□□ -2.05
ZNF540Q8NDQ6 RNU5E-1-201ENST00000362477 120 ntBASIC2.26□□□□□ -2.05
ZNF540Q8NDQ6 RNA5SP68-201ENST00000363885 119 ntBASIC2.26□□□□□ -2.05
ZNF540Q8NDQ6 SNORA16B-201ENST00000364674 135 ntBASIC2.26□□□□□ -2.05
ZNF540Q8NDQ6 RNA5SP126-201ENST00000365092 109 ntBASIC2.26□□□□□ -2.05
ZNF540Q8NDQ6 RNU6-898P-201ENST00000365627 104 ntBASIC2.26□□□□□ -2.05
ZNF540Q8NDQ6 U3.37-201ENST00000408528 213 ntBASIC2.26□□□□□ -2.05
ZNF540Q8NDQ6 BTF3L4P1-201ENST00000413813 468 ntBASIC2.26□□□□□ -2.05
ZNF540Q8NDQ6 AL589823.1-201ENST00000429577 183 ntBASIC2.26□□□□□ -2.05
ZNF540Q8NDQ6 AL365184.2-201ENST00000431139 435 ntBASIC2.26□□□□□ -2.05
ZNF540Q8NDQ6 AC092839.1-201ENST00000433475 536 ntTSL 4 BASIC2.26□□□□□ -2.05
ZNF540Q8NDQ6 AL591212.2-201ENST00000433923 257 ntBASIC2.26□□□□□ -2.05
ZNF540Q8NDQ6 AL512286.1-201ENST00000439244 400 ntBASIC2.26□□□□□ -2.05
ZNF540Q8NDQ6 AL360221.1-201ENST00000445989 335 ntBASIC2.26□□□□□ -2.05
ZNF540Q8NDQ6 LINC01474-202ENST00000449235 628 ntTSL 3 BASIC2.26□□□□□ -2.05
ZNF540Q8NDQ6 MTCO2P18-201ENST00000457151 658 ntBASIC2.26□□□□□ -2.05
ZNF540Q8NDQ6 AC090515.1-201ENST00000465295 476 ntBASIC2.26□□□□□ -2.05
ZNF540Q8NDQ6 RAP1BP2-201ENST00000478270 544 ntBASIC2.26□□□□□ -2.05
ZNF540Q8NDQ6 AC140059.1-201ENST00000489238 361 ntBASIC2.26□□□□□ -2.05
ZNF540Q8NDQ6 AC034234.1-202ENST00000508696 339 ntTSL 3 BASIC2.26□□□□□ -2.05
ZNF540Q8NDQ6 MTCO3P28-201ENST00000513351 515 ntBASIC2.26□□□□□ -2.05
ZNF540Q8NDQ6 SNORA25.11-201ENST00000515935 105 ntBASIC2.26□□□□□ -2.05
ZNF540Q8NDQ6 HOMER1-205ENST00000535690 642 ntTSL 1 (best) BASIC2.26□□□□□ -2.05
ZNF540Q8NDQ6 AC135279.1-201ENST00000543493 504 ntBASIC2.26□□□□□ -2.05
ZNF540Q8NDQ6 AL157955.1-201ENST00000554433 331 ntTSL 3 BASIC2.26□□□□□ -2.05
ZNF540Q8NDQ6 AC020661.3-201ENST00000558101 414 ntTSL 3 BASIC2.26□□□□□ -2.05
ZNF540Q8NDQ6 AC091489.2-201ENST00000566263 604 ntBASIC2.26□□□□□ -2.05
ZNF540Q8NDQ6 MIR4287-201ENST00000579398 78 ntBASIC2.26□□□□□ -2.05
ZNF540Q8NDQ6 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC2.26□□□□□ -2.05
ZNF540Q8NDQ6 AL590229.1-201ENST00000603497 542 ntBASIC2.26□□□□□ -2.05
ZNF540Q8NDQ6 AC116312.1-201ENST00000606841 314 ntBASIC2.26□□□□□ -2.05
ZNF540Q8NDQ6 AC073114.1-201ENST00000612027 490 ntBASIC2.26□□□□□ -2.05
ZNF540Q8NDQ6 AC009509.4-201ENST00000619202 509 ntBASIC2.26□□□□□ -2.05
ZNF540Q8NDQ6 Clostridiales-1.3-201ENST00000637703 147 ntBASIC2.26□□□□□ -2.05
ZNF540Q8NDQ6 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC2.26□□□□□ -2.05
ZNF540Q8NDQ6 AC006020.1-201ENST00000420179 1854 ntBASIC2.25□□□□□ -2.05
ZNF540Q8NDQ6 MIRLET7G-201ENST00000362280 84 ntBASIC2.25□□□□□ -2.05
ZNF540Q8NDQ6 RNU5F-6P-201ENST00000362979 116 ntBASIC2.25□□□□□ -2.05
ZNF540Q8NDQ6 U3.4-201ENST00000363352 213 ntBASIC2.25□□□□□ -2.05
ZNF540Q8NDQ6 RNA5SP456-201ENST00000364002 114 ntBASIC2.25□□□□□ -2.05
ZNF540Q8NDQ6 RNU4-24P-201ENST00000364565 139 ntBASIC2.25□□□□□ -2.05
ZNF540Q8NDQ6 RNY3P13-201ENST00000365542 102 ntBASIC2.25□□□□□ -2.05
ZNF540Q8NDQ6 AL356057.3-201ENST00000402607 340 ntBASIC2.25□□□□□ -2.05
ZNF540Q8NDQ6 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC2.25□□□□□ -2.05
ZNF540Q8NDQ6 MTND1P23-201ENST00000416931 372 ntBASIC2.25□□□□□ -2.05
ZNF540Q8NDQ6 MTCYBP39-201ENST00000437562 491 ntBASIC2.25□□□□□ -2.05
ZNF540Q8NDQ6 AL121957.1-201ENST00000441532 338 ntTSL 2 BASIC2.25□□□□□ -2.05
ZNF540Q8NDQ6 LINC01813-201ENST00000451034 712 ntTSL 1 (best) BASIC2.25□□□□□ -2.05
ZNF540Q8NDQ6 CHRM3-AS2-203ENST00000458325 895 ntTSL 2 BASIC2.25□□□□□ -2.05
ZNF540Q8NDQ6 RPL31P3-201ENST00000458430 332 ntBASIC2.25□□□□□ -2.05
ZNF540Q8NDQ6 AC011005.2-201ENST00000487324 359 ntBASIC2.25□□□□□ -2.05
ZNF540Q8NDQ6 AC092666.1-201ENST00000492054 573 ntTSL 4 BASIC2.25□□□□□ -2.05
ZNF540Q8NDQ6 AC079349.1-201ENST00000509096 589 ntTSL 2 BASIC2.25□□□□□ -2.05
ZNF540Q8NDQ6 AC107222.1-201ENST00000510899 637 ntBASIC2.25□□□□□ -2.05
ZNF540Q8NDQ6 PCAT4-202ENST00000514836 373 ntTSL 3 BASIC2.25□□□□□ -2.05
ZNF540Q8NDQ6 RNU4-29P-201ENST00000515943 174 ntBASIC2.25□□□□□ -2.05
ZNF540Q8NDQ6 AP003467.2-201ENST00000520175 319 ntBASIC2.25□□□□□ -2.05
ZNF540Q8NDQ6 AC018410.2-201ENST00000540410 610 ntTSL 5 BASIC2.25□□□□□ -2.05
ZNF540Q8NDQ6 POC1B-211ENST00000549504 581 ntTSL 5 BASIC2.25□□□□□ -2.05
ZNF540Q8NDQ6 AC090049.1-201ENST00000551075 1011 ntTSL 3 BASIC2.25□□□□□ -2.05
ZNF540Q8NDQ6 AL359237.1-201ENST00000554305 826 ntTSL 5 BASIC2.25□□□□□ -2.05
ZNF540Q8NDQ6 SNORD53-201ENST00000579969 78 ntBASIC2.25□□□□□ -2.05
ZNF540Q8NDQ6 RSL24D1P11-201ENST00000591045 491 ntBASIC2.25□□□□□ -2.05
ZNF540Q8NDQ6 AC012065.4-201ENST00000602445 679 ntBASIC2.25□□□□□ -2.05
ZNF540Q8NDQ6 AL158063.1-201ENST00000615349 536 ntBASIC2.25□□□□□ -2.05
ZNF540Q8NDQ6 MIR6817-201ENST00000615588 66 ntBASIC2.25□□□□□ -2.05
ZNF540Q8NDQ6 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC2.25□□□□□ -2.05
ZNF540Q8NDQ6 MIR21-201ENST00000362134 72 ntBASIC2.24□□□□□ -2.05
ZNF540Q8NDQ6 RNU6-1159P-201ENST00000362933 107 ntBASIC2.24□□□□□ -2.05
ZNF540Q8NDQ6 SNORA41-201ENST00000384675 132 ntBASIC2.24□□□□□ -2.05
ZNF540Q8NDQ6 SNORA40C-201ENST00000391285 128 ntBASIC2.24□□□□□ -2.05
ZNF540Q8NDQ6 AL512604.1-201ENST00000404812 257 ntBASIC2.24□□□□□ -2.05
ZNF540Q8NDQ6 RNU6ATAC16P-201ENST00000408591 138 ntBASIC2.24□□□□□ -2.05
ZNF540Q8NDQ6 AC078974.1-201ENST00000411597 223 ntBASIC2.24□□□□□ -2.05
ZNF540Q8NDQ6 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC2.24□□□□□ -2.05
ZNF540Q8NDQ6 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC2.24□□□□□ -2.05
ZNF540Q8NDQ6 AC104653.2-201ENST00000435407 416 ntTSL 3 BASIC2.24□□□□□ -2.05
ZNF540Q8NDQ6 AL359771.1-201ENST00000441809 379 ntTSL 5 BASIC2.24□□□□□ -2.05
ZNF540Q8NDQ6 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC2.24□□□□□ -2.05
ZNF540Q8NDQ6 AC012308.1-201ENST00000451232 178 ntBASIC2.24□□□□□ -2.05
ZNF540Q8NDQ6 AC004930.1-201ENST00000470677 254 ntTSL 2 BASIC2.24□□□□□ -2.05
ZNF540Q8NDQ6 AC092608.1-201ENST00000503505 267 ntTSL 2 BASIC2.24□□□□□ -2.05
ZNF540Q8NDQ6 RNU2-10P-201ENST00000516375 211 ntBASIC2.24□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 112.5 ms