Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 RNA5SP82-201ENST00000516707 92 ntBASIC2.36□□□□□ -2.03
HDDC3Q8N4P3 RNU7-193P-201ENST00000516723 65 ntBASIC2.36□□□□□ -2.03
HDDC3Q8N4P3 AP003181.2-201ENST00000528941 181 ntBASIC2.36□□□□□ -2.03
HDDC3Q8N4P3 AC118273.2-201ENST00000532092 465 ntBASIC2.36□□□□□ -2.03
HDDC3Q8N4P3 ADI1P3-201ENST00000549509 470 ntBASIC2.36□□□□□ -2.03
HDDC3Q8N4P3 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC2.36□□□□□ -2.03
HDDC3Q8N4P3 MIR3126-201ENST00000577443 74 ntBASIC2.36□□□□□ -2.03
HDDC3Q8N4P3 ZNF788-206ENST00000596883 692 ntTSL 3 BASIC2.36□□□□□ -2.03
HDDC3Q8N4P3 AC025165.5-201ENST00000602802 578 ntBASIC2.36□□□□□ -2.03
HDDC3Q8N4P3 AC027807.2-201ENST00000616099 408 ntBASIC2.36□□□□□ -2.03
HDDC3Q8N4P3 MIR7844-201ENST00000616161 122 ntBASIC2.36□□□□□ -2.03
HDDC3Q8N4P3 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC2.36□□□□□ -2.03
HDDC3Q8N4P3 AC092656.1-203ENST00000624134 423 ntBASIC2.36□□□□□ -2.03
HDDC3Q8N4P3 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC2.35□□□□□ -2.03
HDDC3Q8N4P3 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC2.35□□□□□ -2.03
HDDC3Q8N4P3 MIR6073-201ENST00000352083 89 ntBASIC2.35□□□□□ -2.03
HDDC3Q8N4P3 RNA5SP181-201ENST00000410246 98 ntBASIC2.35□□□□□ -2.03
HDDC3Q8N4P3 AC064871.1-202ENST00000413954 382 ntTSL 5 BASIC2.35□□□□□ -2.03
HDDC3Q8N4P3 AC016831.2-201ENST00000417179 352 ntBASIC2.35□□□□□ -2.03
HDDC3Q8N4P3 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC2.35□□□□□ -2.03
HDDC3Q8N4P3 LINC01817-201ENST00000429317 564 ntTSL 4 BASIC2.35□□□□□ -2.03
HDDC3Q8N4P3 AC009238.1-201ENST00000442165 424 ntBASIC2.35□□□□□ -2.03
HDDC3Q8N4P3 USP9YP15-201ENST00000442391 422 ntBASIC2.35□□□□□ -2.03
HDDC3Q8N4P3 AC009237.6-201ENST00000446969 424 ntBASIC2.35□□□□□ -2.03
HDDC3Q8N4P3 AP000477.2-201ENST00000447405 778 ntTSL 3 BASIC2.35□□□□□ -2.03
HDDC3Q8N4P3 RPL9P6-201ENST00000492764 598 ntBASIC2.35□□□□□ -2.03
HDDC3Q8N4P3 AC117522.2-201ENST00000510049 657 ntBASIC2.35□□□□□ -2.03
HDDC3Q8N4P3 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC2.35□□□□□ -2.03
HDDC3Q8N4P3 FAM92A1P1-201ENST00000528023 890 ntBASIC2.35□□□□□ -2.03
HDDC3Q8N4P3 OR5B19P-201ENST00000531766 928 ntBASIC2.35□□□□□ -2.03
HDDC3Q8N4P3 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC2.35□□□□□ -2.03
HDDC3Q8N4P3 PSMA3P-201ENST00000555485 635 ntBASIC2.35□□□□□ -2.03
HDDC3Q8N4P3 AC026464.5-201ENST00000562497 722 ntBASIC2.35□□□□□ -2.03
HDDC3Q8N4P3 AC092325.1-201ENST00000566449 554 ntBASIC2.35□□□□□ -2.03
HDDC3Q8N4P3 AC007610.2-201ENST00000566770 666 ntTSL 3 BASIC2.35□□□□□ -2.03
HDDC3Q8N4P3 MIR5694-201ENST00000581190 76 ntBASIC2.35□□□□□ -2.03
HDDC3Q8N4P3 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC2.35□□□□□ -2.03
HDDC3Q8N4P3 AC126118.1-201ENST00000607744 628 ntBASIC2.35□□□□□ -2.03
HDDC3Q8N4P3 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC2.35□□□□□ -2.03
HDDC3Q8N4P3 LIPJ-201ENST00000371939 1484 ntAPPRIS P1 TSL 1 (best) BASIC2.34□□□□□ -2.03
HDDC3Q8N4P3 MIR412-201ENST00000362142 91 ntBASIC2.34□□□□□ -2.03
HDDC3Q8N4P3 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC2.34□□□□□ -2.03
HDDC3Q8N4P3 AL445123.1-201ENST00000422023 446 ntTSL 2 BASIC2.34□□□□□ -2.03
HDDC3Q8N4P3 AC011233.1-201ENST00000422812 283 ntBASIC2.34□□□□□ -2.03
HDDC3Q8N4P3 XKRYP1-201ENST00000423438 492 ntBASIC2.34□□□□□ -2.03
HDDC3Q8N4P3 AL160275.3-201ENST00000423876 471 ntBASIC2.34□□□□□ -2.03
HDDC3Q8N4P3 AC010099.3-201ENST00000423896 409 ntBASIC2.34□□□□□ -2.03
HDDC3Q8N4P3 AC007283.2-201ENST00000424739 197 ntBASIC2.34□□□□□ -2.03
HDDC3Q8N4P3 XKRYP2-201ENST00000432915 492 ntBASIC2.34□□□□□ -2.03
HDDC3Q8N4P3 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC2.34□□□□□ -2.03
HDDC3Q8N4P3 RPS24P1-201ENST00000438550 371 ntBASIC2.34□□□□□ -2.03
HDDC3Q8N4P3 AC016691.1-201ENST00000441321 413 ntBASIC2.34□□□□□ -2.03
HDDC3Q8N4P3 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC2.34□□□□□ -2.03
HDDC3Q8N4P3 USP9YP12-201ENST00000450481 570 ntBASIC2.34□□□□□ -2.03
HDDC3Q8N4P3 LINC02100-201ENST00000512978 238 ntTSL 3 BASIC2.34□□□□□ -2.03
HDDC3Q8N4P3 AC025678.1-201ENST00000567861 338 ntBASIC2.34□□□□□ -2.03
HDDC3Q8N4P3 AC044840.1-201ENST00000577641 472 ntTSL 3 BASIC2.34□□□□□ -2.03
HDDC3Q8N4P3 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC2.34□□□□□ -2.03
HDDC3Q8N4P3 AC067747.1-201ENST00000608026 250 ntBASIC2.34□□□□□ -2.03
HDDC3Q8N4P3 C8orf59-209ENST00000612977 586 ntAPPRIS P1 TSL 2 BASIC2.34□□□□□ -2.03
HDDC3Q8N4P3 AC092140.2-201ENST00000618027 521 ntBASIC2.34□□□□□ -2.03
HDDC3Q8N4P3 AC009878.1-201ENST00000621819 340 ntBASIC2.34□□□□□ -2.03
HDDC3Q8N4P3 AP003400.5-201ENST00000624827 617 ntBASIC2.34□□□□□ -2.03
HDDC3Q8N4P3 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC2.34□□□□□ -2.04
HDDC3Q8N4P3 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC2.33□□□□□ -2.04
HDDC3Q8N4P3 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC2.33□□□□□ -2.04
HDDC3Q8N4P3 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC2.33□□□□□ -2.04
HDDC3Q8N4P3 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC2.33□□□□□ -2.04
HDDC3Q8N4P3 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC2.33□□□□□ -2.04
HDDC3Q8N4P3 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC2.33□□□□□ -2.04
HDDC3Q8N4P3 SNORD114-19-201ENST00000363072 75 ntBASIC2.33□□□□□ -2.04
HDDC3Q8N4P3 RNU5E-5P-201ENST00000365379 116 ntBASIC2.33□□□□□ -2.04
HDDC3Q8N4P3 SNORA6-201ENST00000384033 151 ntBASIC2.33□□□□□ -2.04
HDDC3Q8N4P3 MIR144-201ENST00000384886 86 ntBASIC2.33□□□□□ -2.04
HDDC3Q8N4P3 CIR1P3-201ENST00000405137 479 ntBASIC2.33□□□□□ -2.04
HDDC3Q8N4P3 U3.37-201ENST00000408528 213 ntBASIC2.33□□□□□ -2.04
HDDC3Q8N4P3 Y_RNA.623-201ENST00000411128 95 ntBASIC2.33□□□□□ -2.04
HDDC3Q8N4P3 AL365338.1-201ENST00000422282 858 ntBASIC2.33□□□□□ -2.04
HDDC3Q8N4P3 AL121957.1-201ENST00000441532 338 ntTSL 2 BASIC2.33□□□□□ -2.04
HDDC3Q8N4P3 AL161788.1-201ENST00000441805 169 ntBASIC2.33□□□□□ -2.04
HDDC3Q8N4P3 AL358075.2-201ENST00000452785 339 ntTSL 2 BASIC2.33□□□□□ -2.04
HDDC3Q8N4P3 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC2.33□□□□□ -2.04
HDDC3Q8N4P3 AC117503.1-201ENST00000472241 394 ntBASIC2.33□□□□□ -2.04
HDDC3Q8N4P3 MED28P2-201ENST00000475771 317 ntBASIC2.33□□□□□ -2.04
HDDC3Q8N4P3 RPS27P27-201ENST00000498779 255 ntBASIC2.33□□□□□ -2.04
HDDC3Q8N4P3 AC108078.2-201ENST00000510750 236 ntBASIC2.33□□□□□ -2.04
HDDC3Q8N4P3 AC107222.1-201ENST00000510899 637 ntBASIC2.33□□□□□ -2.04
HDDC3Q8N4P3 HSPE1P18-201ENST00000517602 280 ntBASIC2.33□□□□□ -2.04
HDDC3Q8N4P3 OR5AQ1P-201ENST00000527596 927 ntBASIC2.33□□□□□ -2.04
HDDC3Q8N4P3 MRPL51-203ENST00000538814 501 ntTSL 2 BASIC2.33□□□□□ -2.04
HDDC3Q8N4P3 CLPTM1LP1-201ENST00000604519 484 ntBASIC2.33□□□□□ -2.04
HDDC3Q8N4P3 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC2.33□□□□□ -2.04
HDDC3Q8N4P3 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC2.33□□□□□ -2.04
HDDC3Q8N4P3 AC004223.4-201ENST00000612426 332 ntBASIC2.33□□□□□ -2.04
HDDC3Q8N4P3 U6.42-201ENST00000618440 107 ntBASIC2.33□□□□□ -2.04
HDDC3Q8N4P3 Clostridiales-1.2-201ENST00000636724 160 ntBASIC2.33□□□□□ -2.04
HDDC3Q8N4P3 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC2.33□□□□□ -2.04
HDDC3Q8N4P3 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC2.33□□□□□ -2.04
HDDC3Q8N4P3 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC2.33□□□□□ -2.04
HDDC3Q8N4P3 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 77.7 ms