Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 RNU6ATAC13P-201ENST00000516152 131 ntBASIC3.12□□□□□ -1.91
CCDC28AQ8IWP9 SNORA31.26-201ENST00000517250 137 ntBASIC3.12□□□□□ -1.91
CCDC28AQ8IWP9 TVP23BP1-201ENST00000557500 617 ntBASIC3.12□□□□□ -1.91
CCDC28AQ8IWP9 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC3.12□□□□□ -1.91
CCDC28AQ8IWP9 AC096708.3-201ENST00000584226 559 ntTSL 2 BASIC3.12□□□□□ -1.91
CCDC28AQ8IWP9 LINC01533-202ENST00000588694 632 ntTSL 2 BASIC3.12□□□□□ -1.91
CCDC28AQ8IWP9 AL391813.1-201ENST00000603098 260 ntBASIC3.12□□□□□ -1.91
CCDC28AQ8IWP9 AL606490.9-201ENST00000603331 271 ntBASIC3.12□□□□□ -1.91
CCDC28AQ8IWP9 SRGNP1-201ENST00000603392 451 ntBASIC3.12□□□□□ -1.91
CCDC28AQ8IWP9 AC124303.1-201ENST00000605703 360 ntBASIC3.12□□□□□ -1.91
CCDC28AQ8IWP9 AC019193.3-201ENST00000609144 554 ntBASIC3.12□□□□□ -1.91
CCDC28AQ8IWP9 AL359962.2-201ENST00000610044 303 ntTSL 5 BASIC3.12□□□□□ -1.91
CCDC28AQ8IWP9 FAM27D1-201ENST00000612308 341 ntBASIC3.12□□□□□ -1.91
CCDC28AQ8IWP9 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC3.12□□□□□ -1.91
CCDC28AQ8IWP9 AK9-201ENST00000285397 2566 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
CCDC28AQ8IWP9 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC3.12□□□□□ -1.91
CCDC28AQ8IWP9 OFD1P6Y-202ENST00000451061 2724 ntBASIC3.12□□□□□ -1.91
CCDC28AQ8IWP9 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
CCDC28AQ8IWP9 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
CCDC28AQ8IWP9 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
CCDC28AQ8IWP9 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC3.11□□□□□ -1.91
CCDC28AQ8IWP9 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC3.11□□□□□ -1.91
CCDC28AQ8IWP9 RPL9P7-201ENST00000330965 580 ntBASIC3.11□□□□□ -1.91
CCDC28AQ8IWP9 RNU1-14P-201ENST00000362759 152 ntBASIC3.11□□□□□ -1.91
CCDC28AQ8IWP9 Y_RNA.151-201ENST00000363566 112 ntBASIC3.11□□□□□ -1.91
CCDC28AQ8IWP9 SNORA51.4-201ENST00000364993 124 ntBASIC3.11□□□□□ -1.91
CCDC28AQ8IWP9 U8.9-201ENST00000365667 134 ntBASIC3.11□□□□□ -1.91
CCDC28AQ8IWP9 RNU6-1297P-201ENST00000384415 104 ntBASIC3.11□□□□□ -1.91
CCDC28AQ8IWP9 RNU6-843P-201ENST00000384454 104 ntBASIC3.11□□□□□ -1.91
CCDC28AQ8IWP9 Y_RNA.509-201ENST00000384506 99 ntBASIC3.11□□□□□ -1.91
CCDC28AQ8IWP9 MIR517A-201ENST00000385001 87 ntBASIC3.11□□□□□ -1.91
CCDC28AQ8IWP9 MIR147B-201ENST00000390185 80 ntBASIC3.11□□□□□ -1.91
CCDC28AQ8IWP9 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC3.11□□□□□ -1.91
CCDC28AQ8IWP9 RNU6ATAC40P-201ENST00000408580 137 ntBASIC3.11□□□□□ -1.91
CCDC28AQ8IWP9 RNU4-25P-201ENST00000410569 230 ntBASIC3.11□□□□□ -1.91
CCDC28AQ8IWP9 RNU6-1245P-201ENST00000411130 106 ntBASIC3.11□□□□□ -1.91
CCDC28AQ8IWP9 AC011933.1-201ENST00000413334 321 ntBASIC3.11□□□□□ -1.91
CCDC28AQ8IWP9 AC245054.2-201ENST00000415639 319 ntBASIC3.11□□□□□ -1.91
CCDC28AQ8IWP9 AC074117.2-201ENST00000417130 397 ntBASIC3.11□□□□□ -1.91
CCDC28AQ8IWP9 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC3.11□□□□□ -1.91
CCDC28AQ8IWP9 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC3.11□□□□□ -1.91
CCDC28AQ8IWP9 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC3.11□□□□□ -1.91
CCDC28AQ8IWP9 AL513043.1-201ENST00000439124 535 ntBASIC3.11□□□□□ -1.91
CCDC28AQ8IWP9 HMGB1P37-201ENST00000439613 609 ntBASIC3.11□□□□□ -1.91
CCDC28AQ8IWP9 AL358232.1-201ENST00000448030 501 ntBASIC3.11□□□□□ -1.91
CCDC28AQ8IWP9 RPL9P9-202ENST00000466501 579 ntBASIC3.11□□□□□ -1.91
CCDC28AQ8IWP9 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC3.11□□□□□ -1.91
CCDC28AQ8IWP9 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC3.11□□□□□ -1.91
CCDC28AQ8IWP9 RN7SKP282-201ENST00000516824 299 ntBASIC3.11□□□□□ -1.91
CCDC28AQ8IWP9 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC3.11□□□□□ -1.91
CCDC28AQ8IWP9 AC104027.1-201ENST00000521887 300 ntBASIC3.11□□□□□ -1.91
CCDC28AQ8IWP9 AC073655.2-202ENST00000547927 401 ntTSL 3 BASIC3.11□□□□□ -1.91
CCDC28AQ8IWP9 POC1B-211ENST00000549504 581 ntTSL 5 BASIC3.11□□□□□ -1.91
CCDC28AQ8IWP9 BNIP3P16-201ENST00000589779 534 ntBASIC3.11□□□□□ -1.91
CCDC28AQ8IWP9 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC3.11□□□□□ -1.91
CCDC28AQ8IWP9 AL133215.3-201ENST00000609801 448 ntBASIC3.11□□□□□ -1.91
CCDC28AQ8IWP9 AL359314.1-201ENST00000616913 261 ntBASIC3.11□□□□□ -1.91
CCDC28AQ8IWP9 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC3.11□□□□□ -1.91
CCDC28AQ8IWP9 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC3.11□□□□□ -1.91
CCDC28AQ8IWP9 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
CCDC28AQ8IWP9 MTND5P1-201ENST00000445440 1375 ntBASIC3.11□□□□□ -1.91
CCDC28AQ8IWP9 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
CCDC28AQ8IWP9 HDX-206ENST00000506585 6158 ntTSL 2 BASIC3.1□□□□□ -1.91
CCDC28AQ8IWP9 AL356274.2-201ENST00000624379 3752 ntBASIC3.1□□□□□ -1.91
CCDC28AQ8IWP9 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
CCDC28AQ8IWP9 RNA5SP447-201ENST00000363749 119 ntBASIC3.1□□□□□ -1.91
CCDC28AQ8IWP9 RNU6-1317P-201ENST00000364582 104 ntBASIC3.1□□□□□ -1.91
CCDC28AQ8IWP9 RNA5SP505-201ENST00000364748 108 ntBASIC3.1□□□□□ -1.91
CCDC28AQ8IWP9 RNU6-487P-201ENST00000365430 104 ntBASIC3.1□□□□□ -1.91
CCDC28AQ8IWP9 TCEAL7-202ENST00000372666 852 ntAPPRIS P1 TSL 2 BASIC3.1□□□□□ -1.91
CCDC28AQ8IWP9 RNU6-790P-201ENST00000384479 105 ntBASIC3.1□□□□□ -1.91
CCDC28AQ8IWP9 RNU4-14P-201ENST00000410858 122 ntBASIC3.1□□□□□ -1.91
CCDC28AQ8IWP9 RPEP3-201ENST00000425462 676 ntBASIC3.1□□□□□ -1.91
CCDC28AQ8IWP9 AC009414.1-201ENST00000427200 443 ntBASIC3.1□□□□□ -1.91
CCDC28AQ8IWP9 AC097713.2-201ENST00000430199 356 ntBASIC3.1□□□□□ -1.91
CCDC28AQ8IWP9 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC3.1□□□□□ -1.91
CCDC28AQ8IWP9 AL355340.1-201ENST00000433085 344 ntTSL 3 BASIC3.1□□□□□ -1.91
CCDC28AQ8IWP9 DAP3P1-201ENST00000441522 278 ntBASIC3.1□□□□□ -1.91
CCDC28AQ8IWP9 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC3.1□□□□□ -1.91
CCDC28AQ8IWP9 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC3.1□□□□□ -1.91
CCDC28AQ8IWP9 RPS26P21-201ENST00000475397 348 ntBASIC3.1□□□□□ -1.91
CCDC28AQ8IWP9 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC3.1□□□□□ -1.91
CCDC28AQ8IWP9 GZMAP1-201ENST00000503054 631 ntBASIC3.1□□□□□ -1.91
CCDC28AQ8IWP9 AC114801.2-201ENST00000503825 781 ntBASIC3.1□□□□□ -1.91
CCDC28AQ8IWP9 RAC1P5-201ENST00000512182 576 ntBASIC3.1□□□□□ -1.91
CCDC28AQ8IWP9 LINC02014-201ENST00000514010 713 ntTSL 3 BASIC3.1□□□□□ -1.91
CCDC28AQ8IWP9 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC3.1□□□□□ -1.91
CCDC28AQ8IWP9 AC091534.1-202ENST00000549953 468 ntTSL 5 BASIC3.1□□□□□ -1.91
CCDC28AQ8IWP9 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC3.1□□□□□ -1.91
CCDC28AQ8IWP9 CPDP1-201ENST00000579660 283 ntBASIC3.1□□□□□ -1.91
CCDC28AQ8IWP9 MIR4715-201ENST00000584117 79 ntBASIC3.1□□□□□ -1.91
CCDC28AQ8IWP9 MIR4443-201ENST00000585052 53 ntBASIC3.1□□□□□ -1.91
CCDC28AQ8IWP9 AL591034.3-201ENST00000605511 685 ntBASIC3.1□□□□□ -1.91
CCDC28AQ8IWP9 CR392039.5-201ENST00000623201 510 ntBASIC3.1□□□□□ -1.91
CCDC28AQ8IWP9 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.1□□□□□ -1.91
CCDC28AQ8IWP9 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC3.1□□□□□ -1.91
CCDC28AQ8IWP9 AC019117.3-201ENST00000637807 3523 ntAPPRIS P1 TSL 5 BASIC3.1□□□□□ -1.91
CCDC28AQ8IWP9 LINC00630-205ENST00000440496 2101 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
CCDC28AQ8IWP9 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
CCDC28AQ8IWP9 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC3.09□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 110.1 ms