Protein–RNA interactions for Protein: P28356

HOXD9, Homeobox protein Hox-D9, humanhuman

Predicted RBP Predictions only

Length 352 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD9P28356 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC3.3□□□□□ -1.88
HOXD9P28356 MTND5P10-201ENST00000603719 1809 ntBASIC3.3□□□□□ -1.88
HOXD9P28356 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
HOXD9P28356 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC3.3□□□□□ -1.88
HOXD9P28356 AL353746.1-201ENST00000566293 6881 ntBASIC3.3□□□□□ -1.88
HOXD9P28356 RNU6-562P-201ENST00000362731 107 ntBASIC3.3□□□□□ -1.88
HOXD9P28356 Y_RNA.112-201ENST00000363250 102 ntBASIC3.3□□□□□ -1.88
HOXD9P28356 Y_RNA.145-201ENST00000363527 102 ntBASIC3.3□□□□□ -1.88
HOXD9P28356 RNU6-525P-201ENST00000363685 104 ntBASIC3.3□□□□□ -1.88
HOXD9P28356 MIR128-1-201ENST00000384921 82 ntBASIC3.3□□□□□ -1.88
HOXD9P28356 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC3.3□□□□□ -1.88
HOXD9P28356 Z92545.1-201ENST00000411782 234 ntBASIC3.3□□□□□ -1.88
HOXD9P28356 RPS12P24-201ENST00000412619 387 ntBASIC3.3□□□□□ -1.88
HOXD9P28356 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC3.3□□□□□ -1.88
HOXD9P28356 AC080125.1-201ENST00000414888 684 ntBASIC3.3□□□□□ -1.88
HOXD9P28356 LINC01683-201ENST00000443479 412 ntTSL 3 BASIC3.3□□□□□ -1.88
HOXD9P28356 AL137792.2-201ENST00000443484 235 ntBASIC3.3□□□□□ -1.88
HOXD9P28356 SSXP4-201ENST00000451349 245 ntBASIC3.3□□□□□ -1.88
HOXD9P28356 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC3.3□□□□□ -1.88
HOXD9P28356 LEF1-218ENST00000512172 598 ntTSL 2 BASIC3.3□□□□□ -1.88
HOXD9P28356 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
HOXD9P28356 ERHP1-201ENST00000523006 310 ntBASIC3.3□□□□□ -1.88
HOXD9P28356 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC3.3□□□□□ -1.88
HOXD9P28356 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC3.3□□□□□ -1.88
HOXD9P28356 AC040896.1-201ENST00000613819 479 ntBASIC3.3□□□□□ -1.88
HOXD9P28356 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
HOXD9P28356 AC007496.3-201ENST00000624987 3443 ntBASIC3.3□□□□□ -1.88
HOXD9P28356 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC3.3□□□□□ -1.88
HOXD9P28356 PWAR6-201ENST00000552334 4618 ntBASIC3.3□□□□□ -1.88
HOXD9P28356 ADAMTS9-AS1-207ENST00000594810 3609 ntTSL 4 BASIC3.3□□□□□ -1.88
HOXD9P28356 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC3.3□□□□□ -1.88
HOXD9P28356 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC3.29□□□□□ -1.88
HOXD9P28356 AC025164.2-202ENST00000499685 5699 ntTSL 3 BASIC3.29□□□□□ -1.88
HOXD9P28356 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC3.29□□□□□ -1.88
HOXD9P28356 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC3.29□□□□□ -1.88
HOXD9P28356 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC3.29□□□□□ -1.88
HOXD9P28356 SDAD1P2-201ENST00000441308 2028 ntBASIC3.29□□□□□ -1.88
HOXD9P28356 SNORA22B-201ENST00000383876 138 ntBASIC3.29□□□□□ -1.88
HOXD9P28356 RNU6-601P-201ENST00000384540 107 ntBASIC3.29□□□□□ -1.88
HOXD9P28356 RNU6-328P-201ENST00000390887 106 ntBASIC3.29□□□□□ -1.88
HOXD9P28356 SNORA48.5-201ENST00000391143 135 ntBASIC3.29□□□□□ -1.88
HOXD9P28356 Z98941.1-201ENST00000407764 100 ntBASIC3.29□□□□□ -1.88
HOXD9P28356 U3.42-201ENST00000408746 214 ntBASIC3.29□□□□□ -1.88
HOXD9P28356 RNU6-1304P-201ENST00000411374 106 ntBASIC3.29□□□□□ -1.88
HOXD9P28356 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC3.29□□□□□ -1.88
HOXD9P28356 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC3.29□□□□□ -1.88
HOXD9P28356 PMCHL1-202ENST00000423102 261 ntBASIC3.29□□□□□ -1.88
HOXD9P28356 RPL27AP8-201ENST00000424277 446 ntBASIC3.29□□□□□ -1.88
HOXD9P28356 AC091390.3-201ENST00000426478 338 ntBASIC3.29□□□□□ -1.88
HOXD9P28356 AL591212.2-201ENST00000433923 257 ntBASIC3.29□□□□□ -1.88
HOXD9P28356 CST9LP2-201ENST00000437612 320 ntBASIC3.29□□□□□ -1.88
HOXD9P28356 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC3.29□□□□□ -1.88
HOXD9P28356 DARS-AS1-205ENST00000444649 558 ntTSL 3 BASIC3.29□□□□□ -1.88
HOXD9P28356 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC3.29□□□□□ -1.88
HOXD9P28356 RPL37P6-201ENST00000460682 294 ntBASIC3.29□□□□□ -1.88
HOXD9P28356 AC117503.1-201ENST00000472241 394 ntBASIC3.29□□□□□ -1.88
HOXD9P28356 RPL31P60-201ENST00000478450 367 ntBASIC3.29□□□□□ -1.88
HOXD9P28356 RPS29P2-201ENST00000479278 136 ntBASIC3.29□□□□□ -1.88
HOXD9P28356 LINC02110-201ENST00000503870 546 ntTSL 3 BASIC3.29□□□□□ -1.88
HOXD9P28356 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
HOXD9P28356 AL359273.1-201ENST00000510918 627 ntBASIC3.29□□□□□ -1.88
HOXD9P28356 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC3.29□□□□□ -1.88
HOXD9P28356 SNORA70.16-201ENST00000516390 95 ntBASIC3.29□□□□□ -1.88
HOXD9P28356 RNU4ATAC3P-201ENST00000516699 126 ntBASIC3.29□□□□□ -1.88
HOXD9P28356 RNU6-840P-201ENST00000517275 65 ntBASIC3.29□□□□□ -1.88
HOXD9P28356 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC3.29□□□□□ -1.88
HOXD9P28356 AC005951.2-201ENST00000576282 495 ntBASIC3.29□□□□□ -1.88
HOXD9P28356 MIR4325-201ENST00000583049 90 ntBASIC3.29□□□□□ -1.88
HOXD9P28356 AC012594.1-269ENST00000600489 628 ntTSL 5 BASIC3.29□□□□□ -1.88
HOXD9P28356 AL160281.1-201ENST00000605307 311 ntBASIC3.29□□□□□ -1.88
HOXD9P28356 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC3.29□□□□□ -1.88
HOXD9P28356 AC018692.3-201ENST00000623929 123 ntBASIC3.29□□□□□ -1.88
HOXD9P28356 U6.98-201ENST00000637157 84 ntBASIC3.29□□□□□ -1.88
HOXD9P28356 EVI5-201ENST00000370331 7403 ntAPPRIS P3 TSL 1 (best) BASIC3.29□□□□□ -1.88
HOXD9P28356 CPD-202ENST00000543464 4007 ntTSL 2 BASIC3.29□□□□□ -1.88
HOXD9P28356 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC3.29□□□□□ -1.88
HOXD9P28356 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC3.28□□□□□ -1.88
HOXD9P28356 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
HOXD9P28356 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
HOXD9P28356 SNORA7.4-201ENST00000384249 137 ntBASIC3.28□□□□□ -1.88
HOXD9P28356 Y_RNA.534-201ENST00000384599 112 ntBASIC3.28□□□□□ -1.88
HOXD9P28356 MIR493-201ENST00000385254 89 ntBASIC3.28□□□□□ -1.88
HOXD9P28356 AL139039.1-201ENST00000401900 692 ntBASIC3.28□□□□□ -1.88
HOXD9P28356 RPL31P12-201ENST00000422587 358 ntBASIC3.28□□□□□ -1.88
HOXD9P28356 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC3.28□□□□□ -1.88
HOXD9P28356 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC3.28□□□□□ -1.88
HOXD9P28356 RPL7P28-201ENST00000437739 740 ntBASIC3.28□□□□□ -1.88
HOXD9P28356 LAMTOR5P1-201ENST00000444290 270 ntBASIC3.28□□□□□ -1.88
HOXD9P28356 MTCO3P10-201ENST00000455912 772 ntBASIC3.28□□□□□ -1.88
HOXD9P28356 RPL21P41-201ENST00000459863 264 ntBASIC3.28□□□□□ -1.88
HOXD9P28356 AC009901.1-201ENST00000506703 541 ntBASIC3.28□□□□□ -1.88
HOXD9P28356 TBCAP3-201ENST00000512475 312 ntBASIC3.28□□□□□ -1.88
HOXD9P28356 GMPSP1-201ENST00000514075 579 ntBASIC3.28□□□□□ -1.88
HOXD9P28356 SMURF2P1-201ENST00000514992 481 ntBASIC3.28□□□□□ -1.88
HOXD9P28356 RNU6-927P-201ENST00000516199 100 ntBASIC3.28□□□□□ -1.88
HOXD9P28356 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC3.28□□□□□ -1.88
HOXD9P28356 MIR3921-201ENST00000577308 85 ntBASIC3.28□□□□□ -1.88
HOXD9P28356 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC3.28□□□□□ -1.88
HOXD9P28356 AC100830.2-201ENST00000581636 240 ntBASIC3.28□□□□□ -1.88
HOXD9P28356 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC3.28□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 118.7 ms