Protein–RNA interactions for Protein: Q9Y5X1

SNX9, Sorting nexin-9, humanhuman

Predictions only

Length 595 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX9Q9Y5X1 RFPL3S-202ENST00000382086 455 ntAPPRIS ALT2 TSL 2 BASIC3.1□□□□□ -1.91
SNX9Q9Y5X1 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC3.1□□□□□ -1.91
SNX9Q9Y5X1 RNU6-817P-201ENST00000391083 104 ntBASIC3.1□□□□□ -1.91
SNX9Q9Y5X1 RNU6-373P-201ENST00000411247 98 ntBASIC3.1□□□□□ -1.91
SNX9Q9Y5X1 RPS12P24-201ENST00000412619 387 ntBASIC3.1□□□□□ -1.91
SNX9Q9Y5X1 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC3.1□□□□□ -1.91
SNX9Q9Y5X1 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC3.1□□□□□ -1.91
SNX9Q9Y5X1 LAMTOR5P1-201ENST00000444290 270 ntBASIC3.1□□□□□ -1.91
SNX9Q9Y5X1 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC3.1□□□□□ -1.91
SNX9Q9Y5X1 RPS29P12-201ENST00000460178 152 ntBASIC3.1□□□□□ -1.91
SNX9Q9Y5X1 AC098799.2-201ENST00000509466 868 ntBASIC3.1□□□□□ -1.91
SNX9Q9Y5X1 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC3.1□□□□□ -1.91
SNX9Q9Y5X1 AC006445.2-201ENST00000510061 472 ntBASIC3.1□□□□□ -1.91
SNX9Q9Y5X1 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC3.1□□□□□ -1.91
SNX9Q9Y5X1 RNU4-29P-201ENST00000515943 174 ntBASIC3.1□□□□□ -1.91
SNX9Q9Y5X1 RNU6-507P-201ENST00000516045 100 ntBASIC3.1□□□□□ -1.91
SNX9Q9Y5X1 RN7SKP43-201ENST00000516173 320 ntBASIC3.1□□□□□ -1.91
SNX9Q9Y5X1 AF279873.4-202ENST00000521714 511 ntTSL 2 BASIC3.1□□□□□ -1.91
SNX9Q9Y5X1 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC3.1□□□□□ -1.91
SNX9Q9Y5X1 AC078814.3-201ENST00000553036 491 ntBASIC3.1□□□□□ -1.91
SNX9Q9Y5X1 AL118558.2-201ENST00000556294 238 ntBASIC3.1□□□□□ -1.91
SNX9Q9Y5X1 AC005730.3-201ENST00000583067 366 ntBASIC3.1□□□□□ -1.91
SNX9Q9Y5X1 AC018638.8-201ENST00000588755 281 ntBASIC3.1□□□□□ -1.91
SNX9Q9Y5X1 C8orf59-208ENST00000612809 475 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
SNX9Q9Y5X1 AC027309.3-201ENST00000623419 351 ntBASIC3.1□□□□□ -1.91
SNX9Q9Y5X1 TPTE2P4-201ENST00000258589 1605 ntBASIC3.1□□□□□ -1.91
SNX9Q9Y5X1 HSPA8P4-201ENST00000511877 1920 ntBASIC3.09□□□□□ -1.91
SNX9Q9Y5X1 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
SNX9Q9Y5X1 Y_RNA.70-201ENST00000362886 110 ntBASIC3.09□□□□□ -1.91
SNX9Q9Y5X1 Y_RNA.157-201ENST00000363638 102 ntBASIC3.09□□□□□ -1.91
SNX9Q9Y5X1 RNU6-288P-201ENST00000363690 104 ntBASIC3.09□□□□□ -1.91
SNX9Q9Y5X1 Y_RNA.231-201ENST00000364358 102 ntBASIC3.09□□□□□ -1.91
SNX9Q9Y5X1 RNU6-522P-201ENST00000364497 107 ntBASIC3.09□□□□□ -1.91
SNX9Q9Y5X1 Y_RNA.534-201ENST00000384599 112 ntBASIC3.09□□□□□ -1.91
SNX9Q9Y5X1 RNU6-1197P-201ENST00000391183 107 ntBASIC3.09□□□□□ -1.91
SNX9Q9Y5X1 HIST1H2APS3-201ENST00000403259 134 ntBASIC3.09□□□□□ -1.91
SNX9Q9Y5X1 Y_RNA.615-201ENST00000410769 117 ntBASIC3.09□□□□□ -1.91
SNX9Q9Y5X1 CALM2P2-201ENST00000428512 440 ntBASIC3.09□□□□□ -1.91
SNX9Q9Y5X1 LINC01797-202ENST00000433432 765 ntTSL 3 BASIC3.09□□□□□ -1.91
SNX9Q9Y5X1 AL137789.1-201ENST00000439443 682 ntTSL 3 BASIC3.09□□□□□ -1.91
SNX9Q9Y5X1 AC107083.1-201ENST00000439643 279 ntBASIC3.09□□□□□ -1.91
SNX9Q9Y5X1 AC025750.2-201ENST00000442609 450 ntBASIC3.09□□□□□ -1.91
SNX9Q9Y5X1 PMCHL2-203ENST00000457791 237 ntBASIC3.09□□□□□ -1.91
SNX9Q9Y5X1 LINC01038-201ENST00000457858 428 ntTSL 3 BASIC3.09□□□□□ -1.91
SNX9Q9Y5X1 AP000852.1-201ENST00000472460 573 ntBASIC3.09□□□□□ -1.91
SNX9Q9Y5X1 RPL23AP11-201ENST00000475260 469 ntBASIC3.09□□□□□ -1.91
SNX9Q9Y5X1 RPL31P60-201ENST00000478450 367 ntBASIC3.09□□□□□ -1.91
SNX9Q9Y5X1 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC3.09□□□□□ -1.91
SNX9Q9Y5X1 AC097462.2-201ENST00000504623 481 ntBASIC3.09□□□□□ -1.91
SNX9Q9Y5X1 AC009901.1-201ENST00000506703 541 ntBASIC3.09□□□□□ -1.91
SNX9Q9Y5X1 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC3.09□□□□□ -1.91
SNX9Q9Y5X1 Y_RNA.702-201ENST00000516843 96 ntBASIC3.09□□□□□ -1.91
SNX9Q9Y5X1 RNA5SP471-201ENST00000516971 106 ntBASIC3.09□□□□□ -1.91
SNX9Q9Y5X1 AL137161.1-201ENST00000532231 390 ntBASIC3.09□□□□□ -1.91
SNX9Q9Y5X1 AP000867.2-201ENST00000532468 320 ntBASIC3.09□□□□□ -1.91
SNX9Q9Y5X1 AC023050.3-201ENST00000541142 333 ntBASIC3.09□□□□□ -1.91
SNX9Q9Y5X1 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC3.09□□□□□ -1.91
SNX9Q9Y5X1 AC013553.2-201ENST00000604244 589 ntBASIC3.09□□□□□ -1.91
SNX9Q9Y5X1 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC3.09□□□□□ -1.91
SNX9Q9Y5X1 AC009994.1-201ENST00000606889 253 ntBASIC3.09□□□□□ -1.91
SNX9Q9Y5X1 AC022893.3-201ENST00000607665 437 ntBASIC3.09□□□□□ -1.91
SNX9Q9Y5X1 AC104260.1-201ENST00000616660 539 ntBASIC3.09□□□□□ -1.91
SNX9Q9Y5X1 ANKRD26P2-201ENST00000445530 1710 ntBASIC3.09□□□□□ -1.91
SNX9Q9Y5X1 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
SNX9Q9Y5X1 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC3.09□□□□□ -1.92
SNX9Q9Y5X1 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC3.09□□□□□ -1.92
SNX9Q9Y5X1 AC099654.7-201ENST00000635788 2127 ntBASIC3.08□□□□□ -1.92
SNX9Q9Y5X1 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC3.08□□□□□ -1.92
SNX9Q9Y5X1 SPAG11A-202ENST00000326625 445 ntTSL 5 BASIC3.08□□□□□ -1.92
SNX9Q9Y5X1 RNU6-1287P-201ENST00000362914 107 ntBASIC3.08□□□□□ -1.92
SNX9Q9Y5X1 SNORA80A-201ENST00000363922 136 ntBASIC3.08□□□□□ -1.92
SNX9Q9Y5X1 U3.12-201ENST00000364498 214 ntBASIC3.08□□□□□ -1.92
SNX9Q9Y5X1 RNU6-1127P-201ENST00000384580 107 ntBASIC3.08□□□□□ -1.92
SNX9Q9Y5X1 RNU6-1060P-201ENST00000384664 107 ntBASIC3.08□□□□□ -1.92
SNX9Q9Y5X1 MIR1289-1-201ENST00000408836 144 ntBASIC3.08□□□□□ -1.92
SNX9Q9Y5X1 RNU4-46P-201ENST00000410818 138 ntBASIC3.08□□□□□ -1.92
SNX9Q9Y5X1 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC3.08□□□□□ -1.92
SNX9Q9Y5X1 USP9YP8-201ENST00000441913 500 ntBASIC3.08□□□□□ -1.92
SNX9Q9Y5X1 AL135938.1-201ENST00000443141 297 ntBASIC3.08□□□□□ -1.92
SNX9Q9Y5X1 CBWD4P-201ENST00000445695 655 ntBASIC3.08□□□□□ -1.92
SNX9Q9Y5X1 NIPA2P5-201ENST00000452282 464 ntBASIC3.08□□□□□ -1.92
SNX9Q9Y5X1 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC3.08□□□□□ -1.92
SNX9Q9Y5X1 SNRPFP3-201ENST00000457792 225 ntBASIC3.08□□□□□ -1.92
SNX9Q9Y5X1 RPL21P93-201ENST00000480465 489 ntBASIC3.08□□□□□ -1.92
SNX9Q9Y5X1 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC3.08□□□□□ -1.92
SNX9Q9Y5X1 AC096576.1-201ENST00000489014 359 ntBASIC3.08□□□□□ -1.92
SNX9Q9Y5X1 RPL30P5-201ENST00000494923 336 ntBASIC3.08□□□□□ -1.92
SNX9Q9Y5X1 AC008628.2-201ENST00000502605 298 ntBASIC3.08□□□□□ -1.92
SNX9Q9Y5X1 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC3.08□□□□□ -1.92
SNX9Q9Y5X1 AC091885.1-201ENST00000506658 268 ntBASIC3.08□□□□□ -1.92
SNX9Q9Y5X1 AC010486.1-201ENST00000511793 424 ntBASIC3.08□□□□□ -1.92
SNX9Q9Y5X1 RNU6-875P-201ENST00000516488 106 ntBASIC3.08□□□□□ -1.92
SNX9Q9Y5X1 AP003498.1-201ENST00000532530 347 ntTSL 3 BASIC3.08□□□□□ -1.92
SNX9Q9Y5X1 ADI1P3-201ENST00000549509 470 ntBASIC3.08□□□□□ -1.92
SNX9Q9Y5X1 AC091534.1-202ENST00000549953 468 ntTSL 5 BASIC3.08□□□□□ -1.92
SNX9Q9Y5X1 HMGB1P14-201ENST00000557424 591 ntBASIC3.08□□□□□ -1.92
SNX9Q9Y5X1 AL137843.1-201ENST00000605078 385 ntBASIC3.08□□□□□ -1.92
SNX9Q9Y5X1 AL033523.1-201ENST00000605153 153 ntBASIC3.08□□□□□ -1.92
SNX9Q9Y5X1 AC021646.1-201ENST00000605469 484 ntBASIC3.08□□□□□ -1.92
SNX9Q9Y5X1 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC3.08□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 84.9 ms