Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 AC123912.5-201ENST00000605470 343 ntBASIC4.84□□□□□ -1.63
CCDC9Q9Y3X0 AC009248.2-201ENST00000619826 254 ntBASIC4.84□□□□□ -1.63
CCDC9Q9Y3X0 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC4.84□□□□□ -1.63
CCDC9Q9Y3X0 AP000553.6-201ENST00000641242 118 ntBASIC4.84□□□□□ -1.63
CCDC9Q9Y3X0 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC4.84□□□□□ -1.64
CCDC9Q9Y3X0 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC4.83□□□□□ -1.64
CCDC9Q9Y3X0 RPS4XP5-202ENST00000449995 1334 ntBASIC4.83□□□□□ -1.64
CCDC9Q9Y3X0 AC138393.1-203ENST00000327086 343 ntBASIC4.83□□□□□ -1.64
CCDC9Q9Y3X0 RNU6-1013P-201ENST00000384180 107 ntBASIC4.83□□□□□ -1.64
CCDC9Q9Y3X0 RNA5SP424-201ENST00000390988 115 ntBASIC4.83□□□□□ -1.64
CCDC9Q9Y3X0 AL022329.2-201ENST00000413494 660 ntTSL 5 BASIC4.83□□□□□ -1.64
CCDC9Q9Y3X0 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC4.83□□□□□ -1.64
CCDC9Q9Y3X0 AC106873.1-201ENST00000420664 459 ntTSL 3 BASIC4.83□□□□□ -1.64
CCDC9Q9Y3X0 PTGES3P4-201ENST00000426243 356 ntBASIC4.83□□□□□ -1.64
CCDC9Q9Y3X0 AC009414.1-201ENST00000427200 443 ntBASIC4.83□□□□□ -1.64
CCDC9Q9Y3X0 AC093151.1-201ENST00000427711 313 ntBASIC4.83□□□□□ -1.64
CCDC9Q9Y3X0 AL353572.1-201ENST00000442490 417 ntBASIC4.83□□□□□ -1.64
CCDC9Q9Y3X0 AL441985.1-201ENST00000457727 251 ntBASIC4.83□□□□□ -1.64
CCDC9Q9Y3X0 STPG2-AS1-201ENST00000508933 537 ntTSL 4 BASIC4.83□□□□□ -1.64
CCDC9Q9Y3X0 RNA5SP154-201ENST00000516193 111 ntBASIC4.83□□□□□ -1.64
CCDC9Q9Y3X0 RNA5SP341-201ENST00000516261 117 ntBASIC4.83□□□□□ -1.64
CCDC9Q9Y3X0 SNORA20.3-201ENST00000516880 132 ntBASIC4.83□□□□□ -1.64
CCDC9Q9Y3X0 ACA59.2-201ENST00000517061 156 ntBASIC4.83□□□□□ -1.64
CCDC9Q9Y3X0 AC099554.1-201ENST00000520032 572 ntTSL 3 BASIC4.83□□□□□ -1.64
CCDC9Q9Y3X0 AC107953.1-201ENST00000522216 297 ntBASIC4.83□□□□□ -1.64
CCDC9Q9Y3X0 AC087241.2-201ENST00000535801 324 ntBASIC4.83□□□□□ -1.64
CCDC9Q9Y3X0 AC025423.5-201ENST00000550230 219 ntBASIC4.83□□□□□ -1.64
CCDC9Q9Y3X0 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC4.83□□□□□ -1.64
CCDC9Q9Y3X0 MIR5680-201ENST00000577577 84 ntBASIC4.83□□□□□ -1.64
CCDC9Q9Y3X0 AC010928.1-202ENST00000589354 473 ntTSL 3 BASIC4.83□□□□□ -1.64
CCDC9Q9Y3X0 AC005261.5-201ENST00000596280 355 ntBASIC4.83□□□□□ -1.64
CCDC9Q9Y3X0 U4.6-201ENST00000621618 127 ntBASIC4.83□□□□□ -1.64
CCDC9Q9Y3X0 FAT3-204ENST00000525166 18699 ntTSL 5 BASIC4.83□□□□□ -1.64
CCDC9Q9Y3X0 CEP44-201ENST00000296519 4173 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
CCDC9Q9Y3X0 AKAP6-201ENST00000280979 15006 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
CCDC9Q9Y3X0 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC4.82□□□□□ -1.64
CCDC9Q9Y3X0 TLR8-202ENST00000311912 3367 ntAPPRIS P4 TSL 1 (best) BASIC4.82□□□□□ -1.64
CCDC9Q9Y3X0 SPINK1-201ENST00000296695 542 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
CCDC9Q9Y3X0 Y_RNA.88-201ENST00000363029 99 ntBASIC4.82□□□□□ -1.64
CCDC9Q9Y3X0 RNU6-254P-201ENST00000363377 107 ntBASIC4.82□□□□□ -1.64
CCDC9Q9Y3X0 RNU6-767P-201ENST00000384132 107 ntBASIC4.82□□□□□ -1.64
CCDC9Q9Y3X0 RNU6-1106P-201ENST00000390845 107 ntBASIC4.82□□□□□ -1.64
CCDC9Q9Y3X0 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
CCDC9Q9Y3X0 TTTY8-202ENST00000426035 518 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
CCDC9Q9Y3X0 MTND4LP16-201ENST00000440828 295 ntBASIC4.82□□□□□ -1.64
CCDC9Q9Y3X0 AC010975.1-201ENST00000443301 669 ntTSL 3 BASIC4.82□□□□□ -1.64
CCDC9Q9Y3X0 AL031274.1-201ENST00000450334 232 ntBASIC4.82□□□□□ -1.64
CCDC9Q9Y3X0 TTTY8B-202ENST00000455570 518 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
CCDC9Q9Y3X0 RNU7-66P-201ENST00000459469 62 ntBASIC4.82□□□□□ -1.64
CCDC9Q9Y3X0 AC107626.1-201ENST00000471084 183 ntBASIC4.82□□□□□ -1.64
CCDC9Q9Y3X0 MRPL42P6-201ENST00000486397 371 ntBASIC4.82□□□□□ -1.64
CCDC9Q9Y3X0 AC017037.1-201ENST00000508460 471 ntBASIC4.82□□□□□ -1.64
CCDC9Q9Y3X0 PANCR-202ENST00000513690 448 ntTSL 2 BASIC4.82□□□□□ -1.64
CCDC9Q9Y3X0 RNU6ATAC13P-201ENST00000516152 131 ntBASIC4.82□□□□□ -1.64
CCDC9Q9Y3X0 RNU4ATAC17P-201ENST00000517272 120 ntBASIC4.82□□□□□ -1.64
CCDC9Q9Y3X0 AC109479.2-201ENST00000517842 174 ntBASIC4.82□□□□□ -1.64
CCDC9Q9Y3X0 CASP1-210ENST00000528974 1402 ntTSL 2 BASIC4.81□□□□□ -1.64
CCDC9Q9Y3X0 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC4.81□□□□□ -1.64
CCDC9Q9Y3X0 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
CCDC9Q9Y3X0 SNORA80A-201ENST00000363922 136 ntBASIC4.81□□□□□ -1.64
CCDC9Q9Y3X0 Y_RNA.279-201ENST00000364763 95 ntBASIC4.81□□□□□ -1.64
CCDC9Q9Y3X0 RNU6-214P-201ENST00000384130 107 ntBASIC4.81□□□□□ -1.64
CCDC9Q9Y3X0 MIR147B-201ENST00000390185 80 ntBASIC4.81□□□□□ -1.64
CCDC9Q9Y3X0 SNORD17-201ENST00000390930 237 ntBASIC4.81□□□□□ -1.64
CCDC9Q9Y3X0 FTH1P15-201ENST00000406984 280 ntBASIC4.81□□□□□ -1.64
CCDC9Q9Y3X0 AL358075.3-201ENST00000426289 226 ntBASIC4.81□□□□□ -1.64
CCDC9Q9Y3X0 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC4.81□□□□□ -1.64
CCDC9Q9Y3X0 AC006028.1-201ENST00000438379 402 ntBASIC4.81□□□□□ -1.64
CCDC9Q9Y3X0 AL359672.1-201ENST00000442302 409 ntBASIC4.81□□□□□ -1.64
CCDC9Q9Y3X0 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
CCDC9Q9Y3X0 RPL23AP45-201ENST00000476406 468 ntBASIC4.81□□□□□ -1.64
CCDC9Q9Y3X0 AC008628.2-201ENST00000502605 298 ntBASIC4.81□□□□□ -1.64
CCDC9Q9Y3X0 AC025445.1-201ENST00000502728 300 ntBASIC4.81□□□□□ -1.64
CCDC9Q9Y3X0 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC4.81□□□□□ -1.64
CCDC9Q9Y3X0 AKIRIN2P1-201ENST00000505898 352 ntBASIC4.81□□□□□ -1.64
CCDC9Q9Y3X0 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC4.81□□□□□ -1.64
CCDC9Q9Y3X0 MIR2114-201ENST00000516645 80 ntBASIC4.81□□□□□ -1.64
CCDC9Q9Y3X0 AC243972.3-201ENST00000539655 198 ntBASIC4.81□□□□□ -1.64
CCDC9Q9Y3X0 AL121579.1-201ENST00000555129 305 ntBASIC4.81□□□□□ -1.64
CCDC9Q9Y3X0 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC4.81□□□□□ -1.64
CCDC9Q9Y3X0 ESCO1-201ENST00000269214 4523 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
CCDC9Q9Y3X0 GCSAML-203ENST00000366491 4130 ntAPPRIS ALT2 TSL 2 BASIC4.81□□□□□ -1.64
CCDC9Q9Y3X0 AC099654.7-201ENST00000635788 2127 ntBASIC4.81□□□□□ -1.64
CCDC9Q9Y3X0 CCNH-206ENST00000508855 2391 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
CCDC9Q9Y3X0 CD36-221ENST00000534394 1741 ntTSL 2 BASIC4.8□□□□□ -1.64
CCDC9Q9Y3X0 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
CCDC9Q9Y3X0 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC4.8□□□□□ -1.64
CCDC9Q9Y3X0 RNU6-78P-201ENST00000362897 107 ntBASIC4.8□□□□□ -1.64
CCDC9Q9Y3X0 RNU6-1148P-201ENST00000410992 104 ntBASIC4.8□□□□□ -1.64
CCDC9Q9Y3X0 SNORD56-201ENST00000413522 71 ntBASIC4.8□□□□□ -1.64
CCDC9Q9Y3X0 AC098614.3-201ENST00000438957 440 ntBASIC4.8□□□□□ -1.64
CCDC9Q9Y3X0 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC4.8□□□□□ -1.64
CCDC9Q9Y3X0 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC4.8□□□□□ -1.64
CCDC9Q9Y3X0 AC025750.2-201ENST00000442609 450 ntBASIC4.8□□□□□ -1.64
CCDC9Q9Y3X0 LINC01034-201ENST00000448806 277 ntTSL 3 BASIC4.8□□□□□ -1.64
CCDC9Q9Y3X0 PMCHL2-203ENST00000457791 237 ntBASIC4.8□□□□□ -1.64
CCDC9Q9Y3X0 S100A11P2-201ENST00000467589 312 ntBASIC4.8□□□□□ -1.64
CCDC9Q9Y3X0 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC4.8□□□□□ -1.64
CCDC9Q9Y3X0 GZMAP1-201ENST00000503054 631 ntBASIC4.8□□□□□ -1.64
CCDC9Q9Y3X0 AC093523.1-201ENST00000503268 499 ntTSL 3 BASIC4.8□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 103.3 ms