Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 FAM27B-201ENST00000610601 213 ntBASIC4.26□□□□□ -1.73
HIF3AQ9Y2N7 UBE2Q2P6-201ENST00000612666 153 ntBASIC4.26□□□□□ -1.73
HIF3AQ9Y2N7 ABCA12-201ENST00000272895 9100 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
HIF3AQ9Y2N7 MS4A1-202ENST00000389939 3372 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
HIF3AQ9Y2N7 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC4.26□□□□□ -1.73
HIF3AQ9Y2N7 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC4.26□□□□□ -1.73
HIF3AQ9Y2N7 AC100821.1-201ENST00000523153 2479 ntBASIC4.26□□□□□ -1.73
HIF3AQ9Y2N7 KYNU-201ENST00000264170 15316 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
HIF3AQ9Y2N7 RASA1-203ENST00000506290 3009 ntAPPRIS ALT2 TSL 2 BASIC4.25□□□□□ -1.73
HIF3AQ9Y2N7 OR14L1P-202ENST00000641545 3009 ntBASIC4.25□□□□□ -1.73
HIF3AQ9Y2N7 APC-207ENST00000508376 10619 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
HIF3AQ9Y2N7 EMSY-215ENST00000533248 3798 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
HIF3AQ9Y2N7 AC092329.3-201ENST00000611392 1904 ntAPPRIS P1 TSL 5 BASIC4.25□□□□□ -1.73
HIF3AQ9Y2N7 PANK1-202ENST00000322191 2513 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
HIF3AQ9Y2N7 GHR-213ENST00000622294 4312 ntTSL 5 BASIC4.25□□□□□ -1.73
HIF3AQ9Y2N7 NUTM2B-AS1-213ENST00000619625 7611 ntTSL 2 BASIC4.25□□□□□ -1.73
HIF3AQ9Y2N7 RNA5SP507-201ENST00000363603 121 ntBASIC4.25□□□□□ -1.73
HIF3AQ9Y2N7 RNU6-961P-201ENST00000363893 105 ntBASIC4.25□□□□□ -1.73
HIF3AQ9Y2N7 Y_RNA.331-201ENST00000365267 102 ntBASIC4.25□□□□□ -1.73
HIF3AQ9Y2N7 RNU6-541P-201ENST00000384709 110 ntBASIC4.25□□□□□ -1.73
HIF3AQ9Y2N7 RNU1-139P-201ENST00000391307 165 ntBASIC4.25□□□□□ -1.73
HIF3AQ9Y2N7 RNA5SP44-201ENST00000410446 133 ntBASIC4.25□□□□□ -1.73
HIF3AQ9Y2N7 RNU6-1001P-201ENST00000411265 100 ntBASIC4.25□□□□□ -1.73
HIF3AQ9Y2N7 AC090952.1-201ENST00000424242 446 ntTSL 3 BASIC4.25□□□□□ -1.73
HIF3AQ9Y2N7 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
HIF3AQ9Y2N7 LINC01150-201ENST00000455671 315 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
HIF3AQ9Y2N7 AF186996.7-201ENST00000492781 209 ntBASIC4.25□□□□□ -1.73
HIF3AQ9Y2N7 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC4.25□□□□□ -1.73
HIF3AQ9Y2N7 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC4.25□□□□□ -1.73
HIF3AQ9Y2N7 AC008033.2-201ENST00000542626 177 ntBASIC4.25□□□□□ -1.73
HIF3AQ9Y2N7 HMGN2P6-201ENST00000551091 273 ntBASIC4.25□□□□□ -1.73
HIF3AQ9Y2N7 UBL5P4-201ENST00000562584 236 ntBASIC4.25□□□□□ -1.73
HIF3AQ9Y2N7 AC015912.2-201ENST00000571053 181 ntBASIC4.25□□□□□ -1.73
HIF3AQ9Y2N7 RPL7P50-201ENST00000600588 727 ntBASIC4.25□□□□□ -1.73
HIF3AQ9Y2N7 RMST_6.1-201ENST00000611980 203 ntBASIC4.25□□□□□ -1.73
HIF3AQ9Y2N7 AC005296.1-201ENST00000616145 209 ntBASIC4.25□□□□□ -1.73
HIF3AQ9Y2N7 AC241585.2-209ENST00000638217 143 ntBASIC4.25□□□□□ -1.73
HIF3AQ9Y2N7 AL136164.3-201ENST00000624429 3978 ntBASIC4.25□□□□□ -1.73
HIF3AQ9Y2N7 INTS6P1-201ENST00000504674 2530 ntBASIC4.25□□□□□ -1.73
HIF3AQ9Y2N7 ADGRL2-201ENST00000319517 5479 ntAPPRIS P2 TSL 1 (best) BASIC4.25□□□□□ -1.73
HIF3AQ9Y2N7 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
HIF3AQ9Y2N7 UTP20-201ENST00000261637 9025 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
HIF3AQ9Y2N7 AC024940.1-206ENST00000632817 4299 ntAPPRIS P5 TSL 5 BASIC4.24□□□□□ -1.73
HIF3AQ9Y2N7 SCN3A-209ENST00000639244 8854 ntTSL 5 BASIC4.24□□□□□ -1.73
HIF3AQ9Y2N7 OR8J3-203ENST00000641913 3047 ntAPPRIS P1 BASIC4.24□□□□□ -1.73
HIF3AQ9Y2N7 RN7SKP104-201ENST00000362605 328 ntBASIC4.24□□□□□ -1.73
HIF3AQ9Y2N7 RNU6-527P-201ENST00000363425 104 ntBASIC4.24□□□□□ -1.73
HIF3AQ9Y2N7 SNORA58B-201ENST00000364259 136 ntBASIC4.24□□□□□ -1.73
HIF3AQ9Y2N7 Y_RNA.262-201ENST00000364641 102 ntBASIC4.24□□□□□ -1.73
HIF3AQ9Y2N7 RNU4-56P-201ENST00000364700 142 ntBASIC4.24□□□□□ -1.73
HIF3AQ9Y2N7 MIR153-2-201ENST00000385225 87 ntBASIC4.24□□□□□ -1.73
HIF3AQ9Y2N7 TRAJ58-201ENST00000390481 63 ntAPPRIS P1 BASIC4.24□□□□□ -1.73
HIF3AQ9Y2N7 CACYBP-203ENST00000406752 243 ntTSL 5 BASIC4.24□□□□□ -1.73
HIF3AQ9Y2N7 U3.37-201ENST00000408528 213 ntBASIC4.24□□□□□ -1.73
HIF3AQ9Y2N7 RNA5SP31-201ENST00000411144 127 ntBASIC4.24□□□□□ -1.73
HIF3AQ9Y2N7 Z74021.1-201ENST00000423610 407 ntBASIC4.24□□□□□ -1.73
HIF3AQ9Y2N7 WARS2P1-201ENST00000429678 537 ntBASIC4.24□□□□□ -1.73
HIF3AQ9Y2N7 AC006026.2-201ENST00000457376 180 ntBASIC4.24□□□□□ -1.73
HIF3AQ9Y2N7 SCARNA22-201ENST00000503991 125 ntBASIC4.24□□□□□ -1.73
HIF3AQ9Y2N7 AC091868.1-201ENST00000508746 304 ntBASIC4.24□□□□□ -1.73
HIF3AQ9Y2N7 HMGB3P3-201ENST00000510526 400 ntBASIC4.24□□□□□ -1.73
HIF3AQ9Y2N7 AC091874.1-201ENST00000511402 339 ntBASIC4.24□□□□□ -1.73
HIF3AQ9Y2N7 AC009446.1-202ENST00000521131 473 ntTSL 3 BASIC4.24□□□□□ -1.73
HIF3AQ9Y2N7 AC015468.4-201ENST00000523496 568 ntTSL 4 BASIC4.24□□□□□ -1.73
HIF3AQ9Y2N7 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC4.24□□□□□ -1.73
HIF3AQ9Y2N7 AC011487.3-201ENST00000593607 453 ntBASIC4.24□□□□□ -1.73
HIF3AQ9Y2N7 AC087632.1-216ENST00000625619 487 ntAPPRIS P1 TSL 3 BASIC4.24□□□□□ -1.73
HIF3AQ9Y2N7 NFIB-211ENST00000606230 2311 ntTSL 5 BASIC4.24□□□□□ -1.73
HIF3AQ9Y2N7 PCDH11X-205ENST00000373094 9179 ntAPPRIS P4 TSL 1 (best) BASIC4.24□□□□□ -1.73
HIF3AQ9Y2N7 G2E3-201ENST00000206595 5804 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
HIF3AQ9Y2N7 DDX20-202ENST00000475700 4332 ntTSL 2 BASIC4.24□□□□□ -1.73
HIF3AQ9Y2N7 AC079160.1-202ENST00000508406 2795 ntTSL 5 BASIC4.24□□□□□ -1.73
HIF3AQ9Y2N7 AC118273.1-201ENST00000525324 3006 ntBASIC4.24□□□□□ -1.73
HIF3AQ9Y2N7 WDFY3-201ENST00000295888 14247 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
HIF3AQ9Y2N7 AC092821.1-204ENST00000518709 3552 ntTSL 5 BASIC4.23□□□□□ -1.73
HIF3AQ9Y2N7 ZRANB3-201ENST00000264159 4046 ntAPPRIS P3 TSL 1 (best) BASIC4.23□□□□□ -1.73
HIF3AQ9Y2N7 AC079062.1-203ENST00000581862 3610 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
HIF3AQ9Y2N7 TLK1-212ENST00000521943 2605 ntTSL 2 BASIC4.23□□□□□ -1.73
HIF3AQ9Y2N7 NFIB-210ENST00000543693 7622 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
HIF3AQ9Y2N7 RNA5SP123-201ENST00000363244 119 ntBASIC4.23□□□□□ -1.73
HIF3AQ9Y2N7 BANF2-202ENST00000377805 444 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
HIF3AQ9Y2N7 RNU6-449P-201ENST00000383914 107 ntBASIC4.23□□□□□ -1.73
HIF3AQ9Y2N7 MIR487A-201ENST00000385009 80 ntBASIC4.23□□□□□ -1.73
HIF3AQ9Y2N7 RNU1-82P-201ENST00000390851 165 ntBASIC4.23□□□□□ -1.73
HIF3AQ9Y2N7 RNA5SP213-201ENST00000391031 106 ntBASIC4.23□□□□□ -1.73
HIF3AQ9Y2N7 AL357139.1-201ENST00000407792 426 ntBASIC4.23□□□□□ -1.73
HIF3AQ9Y2N7 RAB9AP3-201ENST00000412737 573 ntBASIC4.23□□□□□ -1.73
HIF3AQ9Y2N7 RPL23AP27-201ENST00000415161 451 ntBASIC4.23□□□□□ -1.73
HIF3AQ9Y2N7 OR2AM1P-201ENST00000422137 422 ntBASIC4.23□□□□□ -1.73
HIF3AQ9Y2N7 RAB9AP1-201ENST00000449393 573 ntBASIC4.23□□□□□ -1.73
HIF3AQ9Y2N7 AC079168.2-201ENST00000453977 416 ntBASIC4.23□□□□□ -1.73
HIF3AQ9Y2N7 RPL31P13-201ENST00000484151 370 ntBASIC4.23□□□□□ -1.73
HIF3AQ9Y2N7 RPL23AP49-201ENST00000492925 468 ntBASIC4.23□□□□□ -1.73
HIF3AQ9Y2N7 GYPA-208ENST00000512064 441 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
HIF3AQ9Y2N7 RNU6-426P-201ENST00000516464 97 ntBASIC4.23□□□□□ -1.73
HIF3AQ9Y2N7 Vault.1-201ENST00000516474 102 ntBASIC4.23□□□□□ -1.73
HIF3AQ9Y2N7 AP005660.1-201ENST00000522972 293 ntBASIC4.23□□□□□ -1.73
HIF3AQ9Y2N7 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC4.23□□□□□ -1.73
HIF3AQ9Y2N7 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC4.23□□□□□ -1.73
HIF3AQ9Y2N7 L34079.2-201ENST00000597119 561 ntTSL 3 BASIC4.23□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 121.9 ms