Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 RNY1P14-201ENST00000384426 108 ntBASIC1.03□□□□□ -2.25
SCN3AQ9NY46 MIR561-201ENST00000385216 97 ntBASIC1.03□□□□□ -2.25
SCN3AQ9NY46 RNU6-952P-201ENST00000391164 108 ntBASIC1.03□□□□□ -2.25
SCN3AQ9NY46 CoTC_ribozyme.1-201ENST00000408104 192 ntBASIC1.03□□□□□ -2.25
SCN3AQ9NY46 AC079150.1-201ENST00000413043 383 ntTSL 3 BASIC1.03□□□□□ -2.25
SCN3AQ9NY46 USP9YP6-201ENST00000413550 854 ntBASIC1.03□□□□□ -2.25
SCN3AQ9NY46 GPM6BP2-201ENST00000432046 144 ntBASIC1.03□□□□□ -2.25
SCN3AQ9NY46 RPL17P35-201ENST00000432217 549 ntBASIC1.03□□□□□ -2.25
SCN3AQ9NY46 MTCO3P5-201ENST00000433620 714 ntBASIC1.03□□□□□ -2.25
SCN3AQ9NY46 AL161788.1-201ENST00000441805 169 ntBASIC1.03□□□□□ -2.25
SCN3AQ9NY46 GPM6BP1-201ENST00000446387 144 ntBASIC1.03□□□□□ -2.25
SCN3AQ9NY46 AL135787.1-201ENST00000450154 302 ntTSL 3 BASIC1.03□□□□□ -2.25
SCN3AQ9NY46 LINC01546-201ENST00000457435 674 ntTSL 2 BASIC1.03□□□□□ -2.25
SCN3AQ9NY46 GUCA1C-203ENST00000471108 633 ntTSL 2 BASIC1.03□□□□□ -2.25
SCN3AQ9NY46 AC092991.1-201ENST00000477176 376 ntBASIC1.03□□□□□ -2.25
SCN3AQ9NY46 RPL22P13-201ENST00000493291 347 ntBASIC1.03□□□□□ -2.25
SCN3AQ9NY46 AC108752.1-203ENST00000496674 339 ntTSL 5 BASIC1.03□□□□□ -2.25
SCN3AQ9NY46 TMEM251P1-201ENST00000503717 318 ntBASIC1.03□□□□□ -2.25
SCN3AQ9NY46 AC008837.2-201ENST00000513076 418 ntBASIC1.03□□□□□ -2.25
SCN3AQ9NY46 RNU6-1102P-201ENST00000516149 96 ntBASIC1.03□□□□□ -2.25
SCN3AQ9NY46 RNA5SP220-201ENST00000516298 104 ntBASIC1.03□□□□□ -2.25
SCN3AQ9NY46 RNU5B-3P-201ENST00000516601 115 ntBASIC1.03□□□□□ -2.25
SCN3AQ9NY46 UTP23-205ENST00000520733 369 ntTSL 3 BASIC1.03□□□□□ -2.25
SCN3AQ9NY46 CARD18-203ENST00000532895 422 ntTSL 2 BASIC1.03□□□□□ -2.25
SCN3AQ9NY46 AL118556.1-201ENST00000555257 502 ntTSL 2 BASIC1.03□□□□□ -2.25
SCN3AQ9NY46 BNIP3P23-201ENST00000599655 511 ntBASIC1.03□□□□□ -2.25
SCN3AQ9NY46 AP000560.1-201ENST00000624150 1937 ntBASIC1.03□□□□□ -2.25
SCN3AQ9NY46 AL390862.1-201ENST00000635467 1469 ntBASIC1.02□□□□□ -2.25
SCN3AQ9NY46 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC1.02□□□□□ -2.25
SCN3AQ9NY46 RNU6-529P-201ENST00000363383 104 ntBASIC1.02□□□□□ -2.25
SCN3AQ9NY46 RNU6-560P-201ENST00000364007 108 ntBASIC1.02□□□□□ -2.25
SCN3AQ9NY46 SNORA8-201ENST00000384574 139 ntBASIC1.02□□□□□ -2.25
SCN3AQ9NY46 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC1.02□□□□□ -2.25
SCN3AQ9NY46 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC1.02□□□□□ -2.25
SCN3AQ9NY46 AL353706.1-201ENST00000436728 494 ntBASIC1.02□□□□□ -2.25
SCN3AQ9NY46 NAALADL2-AS3-202ENST00000453180 413 ntTSL 3 BASIC1.02□□□□□ -2.25
SCN3AQ9NY46 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC1.02□□□□□ -2.25
SCN3AQ9NY46 HMGB1P35-201ENST00000503360 598 ntBASIC1.02□□□□□ -2.25
SCN3AQ9NY46 AP005660.1-201ENST00000522972 293 ntBASIC1.02□□□□□ -2.25
SCN3AQ9NY46 AC123905.1-201ENST00000552098 541 ntTSL 4 BASIC1.02□□□□□ -2.25
SCN3AQ9NY46 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC1.02□□□□□ -2.25
SCN3AQ9NY46 AC136619.2-201ENST00000563361 631 ntBASIC1.02□□□□□ -2.25
SCN3AQ9NY46 MIR4782-201ENST00000577987 79 ntBASIC1.02□□□□□ -2.25
SCN3AQ9NY46 SCOC-AS1-203ENST00000609616 405 ntTSL 3 BASIC1.02□□□□□ -2.25
SCN3AQ9NY46 AC104985.3-201ENST00000623479 597 ntBASIC1.02□□□□□ -2.25
SCN3AQ9NY46 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC1.02□□□□□ -2.25
SCN3AQ9NY46 RNU6-288P-201ENST00000363690 104 ntBASIC1.01□□□□□ -2.25
SCN3AQ9NY46 Y_RNA.224-201ENST00000364308 111 ntBASIC1.01□□□□□ -2.25
SCN3AQ9NY46 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.01□□□□□ -2.25
SCN3AQ9NY46 SNORD65.1-201ENST00000390889 71 ntBASIC1.01□□□□□ -2.25
SCN3AQ9NY46 AL591034.2-201ENST00000402839 359 ntBASIC1.01□□□□□ -2.25
SCN3AQ9NY46 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC1.01□□□□□ -2.25
SCN3AQ9NY46 AL391069.1-201ENST00000422153 358 ntTSL 3 BASIC1.01□□□□□ -2.25
SCN3AQ9NY46 BX119904.4-201ENST00000424402 301 ntBASIC1.01□□□□□ -2.25
SCN3AQ9NY46 AC114808.2-201ENST00000428335 536 ntTSL 4 BASIC1.01□□□□□ -2.25
SCN3AQ9NY46 AC244035.1-201ENST00000430042 390 ntBASIC1.01□□□□□ -2.25
SCN3AQ9NY46 MTCO2P20-201ENST00000437339 673 ntBASIC1.01□□□□□ -2.25
SCN3AQ9NY46 AC009299.3-202ENST00000445372 538 ntTSL 3 BASIC1.01□□□□□ -2.25
SCN3AQ9NY46 ELOCP30-201ENST00000447108 299 ntBASIC1.01□□□□□ -2.25
SCN3AQ9NY46 ATP5J2P3-201ENST00000451550 258 ntBASIC1.01□□□□□ -2.25
SCN3AQ9NY46 AL441985.1-201ENST00000457727 251 ntBASIC1.01□□□□□ -2.25
SCN3AQ9NY46 TOMM22P6-201ENST00000465035 409 ntBASIC1.01□□□□□ -2.25
SCN3AQ9NY46 AC026414.1-201ENST00000504046 698 ntBASIC1.01□□□□□ -2.25
SCN3AQ9NY46 RPF2P2-201ENST00000504693 896 ntBASIC1.01□□□□□ -2.25
SCN3AQ9NY46 LINC02144-201ENST00000511417 592 ntTSL 4 BASIC1.01□□□□□ -2.25
SCN3AQ9NY46 SNORA4.4-201ENST00000515921 135 ntBASIC1.01□□□□□ -2.25
SCN3AQ9NY46 SNORA25.11-201ENST00000515935 105 ntBASIC1.01□□□□□ -2.25
SCN3AQ9NY46 AC090857.2-201ENST00000526362 723 ntTSL 2 BASIC1.01□□□□□ -2.25
SCN3AQ9NY46 SNRPGP1-201ENST00000553864 222 ntBASIC1.01□□□□□ -2.25
SCN3AQ9NY46 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC1.01□□□□□ -2.25
SCN3AQ9NY46 AC023825.1-201ENST00000566704 1030 ntBASIC1.01□□□□□ -2.25
SCN3AQ9NY46 MIR4295-201ENST00000585286 85 ntBASIC1.01□□□□□ -2.25
SCN3AQ9NY46 AC123912.5-201ENST00000605470 343 ntBASIC1.01□□□□□ -2.25
SCN3AQ9NY46 AC107075.1-201ENST00000613695 314 ntBASIC1.01□□□□□ -2.25
SCN3AQ9NY46 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC1.01□□□□□ -2.25
SCN3AQ9NY46 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.01□□□□□ -2.25
SCN3AQ9NY46 Y_RNA.122-201ENST00000363331 96 ntBASIC1.01□□□□□ -2.25
SCN3AQ9NY46 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC1.01□□□□□ -2.25
SCN3AQ9NY46 MTCYBP38-201ENST00000417160 1123 ntBASIC1.01□□□□□ -2.25
SCN3AQ9NY46 AL589986.2-201ENST00000429352 397 ntTSL 2 BASIC1.01□□□□□ -2.25
SCN3AQ9NY46 ARPC3P5-201ENST00000448802 534 ntBASIC1.01□□□□□ -2.25
SCN3AQ9NY46 AL008723.1-201ENST00000452181 590 ntTSL 5 BASIC1.01□□□□□ -2.25
SCN3AQ9NY46 RPL7P43-201ENST00000478876 753 ntBASIC1.01□□□□□ -2.25
SCN3AQ9NY46 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC1.01□□□□□ -2.25
SCN3AQ9NY46 AC024589.1-201ENST00000512207 263 ntBASIC1.01□□□□□ -2.25
SCN3AQ9NY46 RNU6ATAC13P-201ENST00000516152 131 ntBASIC1.01□□□□□ -2.25
SCN3AQ9NY46 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC1.01□□□□□ -2.25
SCN3AQ9NY46 NAP1L1P1-201ENST00000524793 1063 ntBASIC1.01□□□□□ -2.25
SCN3AQ9NY46 OR6C7P-201ENST00000547875 934 ntBASIC1.01□□□□□ -2.25
SCN3AQ9NY46 AL450442.1-201ENST00000554042 854 ntTSL 1 (best) BASIC1.01□□□□□ -2.25
SCN3AQ9NY46 AC122134.1-202ENST00000569111 1201 ntBASIC1.01□□□□□ -2.25
SCN3AQ9NY46 AC005154.1-222ENST00000579024 341 ntTSL 5 BASIC1.01□□□□□ -2.25
SCN3AQ9NY46 AC090227.2-201ENST00000591105 340 ntTSL 5 BASIC1.01□□□□□ -2.25
SCN3AQ9NY46 AL445435.1-201ENST00000604232 665 ntBASIC1.01□□□□□ -2.25
SCN3AQ9NY46 AC018638.7-201ENST00000605836 1114 ntBASIC1.01□□□□□ -2.25
SCN3AQ9NY46 SNORD114-21-201ENST00000606412 72 ntBASIC1.01□□□□□ -2.25
SCN3AQ9NY46 AC103810.8-201ENST00000607347 118 ntBASIC1.01□□□□□ -2.25
SCN3AQ9NY46 AC097468.3-201ENST00000607956 456 ntBASIC1.01□□□□□ -2.25
SCN3AQ9NY46 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC1.01□□□□□ -2.25
SCN3AQ9NY46 AC024581.2-201ENST00000619986 252 ntBASIC1.01□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 99.9 ms