Protein–RNA interactions for Protein: Q96CM3

RPUSD4, Mitochondrial RNA pseudouridine synthase RPUSD4, humanhuman

Known RBP Predictions only

Length 377 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPUSD4Q96CM3 MIR98-201ENST00000606724 119 ntBASIC1.99□□□□□ -2.09
RPUSD4Q96CM3 AC093732.2-201ENST00000607950 274 ntBASIC1.99□□□□□ -2.09
RPUSD4Q96CM3 AL359962.2-201ENST00000610044 303 ntTSL 5 BASIC1.99□□□□□ -2.09
RPUSD4Q96CM3 AC136475.10-201ENST00000620253 385 ntBASIC1.99□□□□□ -2.09
RPUSD4Q96CM3 AC024940.5-201ENST00000622889 474 ntBASIC1.99□□□□□ -2.09
RPUSD4Q96CM3 AC009161.2-201ENST00000624626 138 ntBASIC1.99□□□□□ -2.09
RPUSD4Q96CM3 U6.99-201ENST00000637524 83 ntBASIC1.99□□□□□ -2.09
RPUSD4Q96CM3 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC1.99□□□□□ -2.09
RPUSD4Q96CM3 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC1.99□□□□□ -2.09
RPUSD4Q96CM3 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC1.99□□□□□ -2.09
RPUSD4Q96CM3 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC1.99□□□□□ -2.09
RPUSD4Q96CM3 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC1.98□□□□□ -2.09
RPUSD4Q96CM3 AC073346.2-201ENST00000624724 2058 ntBASIC1.98□□□□□ -2.09
RPUSD4Q96CM3 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC1.98□□□□□ -2.09
RPUSD4Q96CM3 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC1.98□□□□□ -2.09
RPUSD4Q96CM3 TIMM9-202ENST00000395159 1336 ntAPPRIS P1 TSL 1 (best) BASIC1.98□□□□□ -2.09
RPUSD4Q96CM3 MGST1-207ENST00000535309 1331 ntTSL 1 (best) BASIC1.98□□□□□ -2.09
RPUSD4Q96CM3 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC1.98□□□□□ -2.09
RPUSD4Q96CM3 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC1.98□□□□□ -2.09
RPUSD4Q96CM3 SNORD46.1-201ENST00000364139 104 ntBASIC1.98□□□□□ -2.09
RPUSD4Q96CM3 RNU6-371P-201ENST00000364283 108 ntBASIC1.98□□□□□ -2.09
RPUSD4Q96CM3 SNORD115-7-201ENST00000365306 82 ntBASIC1.98□□□□□ -2.09
RPUSD4Q96CM3 RNU6-1103P-201ENST00000384150 107 ntBASIC1.98□□□□□ -2.09
RPUSD4Q96CM3 SNORA9-201ENST00000384215 133 ntBASIC1.98□□□□□ -2.09
RPUSD4Q96CM3 RNU6-606P-201ENST00000384721 111 ntBASIC1.98□□□□□ -2.09
RPUSD4Q96CM3 U3.37-201ENST00000408528 213 ntBASIC1.98□□□□□ -2.09
RPUSD4Q96CM3 RNU6-1328P-201ENST00000410938 106 ntBASIC1.98□□□□□ -2.09
RPUSD4Q96CM3 USP9YP20-201ENST00000419224 558 ntBASIC1.98□□□□□ -2.09
RPUSD4Q96CM3 AC006333.1-201ENST00000422401 410 ntTSL 3 BASIC1.98□□□□□ -2.09
RPUSD4Q96CM3 PTGES3P4-201ENST00000426243 356 ntBASIC1.98□□□□□ -2.09
RPUSD4Q96CM3 AL627311.1-201ENST00000431514 115 ntBASIC1.98□□□□□ -2.09
RPUSD4Q96CM3 MTCO1P19-201ENST00000443487 500 ntBASIC1.98□□□□□ -2.09
RPUSD4Q96CM3 IFNA11P-201ENST00000446352 526 ntBASIC1.98□□□□□ -2.09
RPUSD4Q96CM3 CSN1S2AP-201ENST00000451783 779 ntTSL 1 (best) BASIC1.98□□□□□ -2.09
RPUSD4Q96CM3 FABP5P13-201ENST00000452144 328 ntBASIC1.98□□□□□ -2.09
RPUSD4Q96CM3 LINC01069-201ENST00000452933 546 ntTSL 5 BASIC1.98□□□□□ -2.09
RPUSD4Q96CM3 AC233279.1-201ENST00000455300 423 ntBASIC1.98□□□□□ -2.09
RPUSD4Q96CM3 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC1.98□□□□□ -2.09
RPUSD4Q96CM3 KLF3P2-201ENST00000465138 268 ntBASIC1.98□□□□□ -2.09
RPUSD4Q96CM3 AC023194.1-201ENST00000493084 308 ntBASIC1.98□□□□□ -2.09
RPUSD4Q96CM3 EIF4EP3-201ENST00000498782 656 ntBASIC1.98□□□□□ -2.09
RPUSD4Q96CM3 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC1.98□□□□□ -2.09
RPUSD4Q96CM3 AC079140.3-201ENST00000511111 550 ntBASIC1.98□□□□□ -2.09
RPUSD4Q96CM3 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC1.98□□□□□ -2.09
RPUSD4Q96CM3 AC073591.1-201ENST00000552736 597 ntTSL 3 BASIC1.98□□□□□ -2.09
RPUSD4Q96CM3 LINC02461-201ENST00000553211 836 ntTSL 3 BASIC1.98□□□□□ -2.09
RPUSD4Q96CM3 AL121821.2-201ENST00000556081 394 ntBASIC1.98□□□□□ -2.09
RPUSD4Q96CM3 AC018904.1-201ENST00000560594 542 ntTSL 3 BASIC1.98□□□□□ -2.09
RPUSD4Q96CM3 RPS3AP23-202ENST00000574601 686 ntBASIC1.98□□□□□ -2.09
RPUSD4Q96CM3 SNORD53-201ENST00000579969 78 ntBASIC1.98□□□□□ -2.09
RPUSD4Q96CM3 MIR4775-201ENST00000581168 75 ntBASIC1.98□□□□□ -2.09
RPUSD4Q96CM3 AC022960.1-201ENST00000582269 348 ntTSL 3 BASIC1.98□□□□□ -2.09
RPUSD4Q96CM3 MIR548AC-201ENST00000585049 88 ntBASIC1.98□□□□□ -2.09
RPUSD4Q96CM3 RNU6-91P-201ENST00000607774 107 ntBASIC1.98□□□□□ -2.09
RPUSD4Q96CM3 AP001596.2-201ENST00000608410 312 ntBASIC1.98□□□□□ -2.09
RPUSD4Q96CM3 AC138627.2-201ENST00000624202 601 ntBASIC1.98□□□□□ -2.09
RPUSD4Q96CM3 MIR7157-201ENST00000635801 60 ntBASIC1.98□□□□□ -2.09
RPUSD4Q96CM3 MIR7515-201ENST00000637837 67 ntBASIC1.98□□□□□ -2.09
RPUSD4Q96CM3 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC1.98□□□□□ -2.09
RPUSD4Q96CM3 AC004520.1-201ENST00000608362 1413 ntBASIC1.98□□□□□ -2.09
RPUSD4Q96CM3 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC1.98□□□□□ -2.09
RPUSD4Q96CM3 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
RPUSD4Q96CM3 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC1.97□□□□□ -2.09
RPUSD4Q96CM3 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC1.97□□□□□ -2.09
RPUSD4Q96CM3 SPAG11A-202ENST00000326625 445 ntTSL 5 BASIC1.97□□□□□ -2.09
RPUSD4Q96CM3 MIRLET7G-201ENST00000362280 84 ntBASIC1.97□□□□□ -2.09
RPUSD4Q96CM3 RNU6-181P-201ENST00000363225 107 ntBASIC1.97□□□□□ -2.09
RPUSD4Q96CM3 RNU1-112P-201ENST00000364401 164 ntBASIC1.97□□□□□ -2.09
RPUSD4Q96CM3 RNU6-282P-201ENST00000365357 103 ntBASIC1.97□□□□□ -2.09
RPUSD4Q96CM3 RNU4-48P-201ENST00000365559 182 ntBASIC1.97□□□□□ -2.09
RPUSD4Q96CM3 SNORD116-2-201ENST00000384274 95 ntBASIC1.97□□□□□ -2.09
RPUSD4Q96CM3 SNORD116-6-201ENST00000384711 96 ntBASIC1.97□□□□□ -2.09
RPUSD4Q96CM3 Y_RNA.576-201ENST00000384781 102 ntBASIC1.97□□□□□ -2.09
RPUSD4Q96CM3 RNU4ATAC16P-201ENST00000408512 126 ntBASIC1.97□□□□□ -2.09
RPUSD4Q96CM3 CTNNA2-204ENST00000409266 432 ntTSL 3 BASIC1.97□□□□□ -2.09
RPUSD4Q96CM3 Y_RNA.623-201ENST00000411128 95 ntBASIC1.97□□□□□ -2.09
RPUSD4Q96CM3 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC1.97□□□□□ -2.09
RPUSD4Q96CM3 AC002456.1-201ENST00000415965 317 ntTSL 5 BASIC1.97□□□□□ -2.09
RPUSD4Q96CM3 MTCO2P16-201ENST00000436962 677 ntBASIC1.97□□□□□ -2.09
RPUSD4Q96CM3 AL359771.1-201ENST00000441809 379 ntTSL 5 BASIC1.97□□□□□ -2.09
RPUSD4Q96CM3 AL135938.1-201ENST00000443141 297 ntBASIC1.97□□□□□ -2.09
RPUSD4Q96CM3 AL360221.1-201ENST00000445989 335 ntBASIC1.97□□□□□ -2.09
RPUSD4Q96CM3 MTND1P29-201ENST00000448112 647 ntBASIC1.97□□□□□ -2.09
RPUSD4Q96CM3 C1DP4-201ENST00000455429 424 ntBASIC1.97□□□□□ -2.09
RPUSD4Q96CM3 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC1.97□□□□□ -2.09
RPUSD4Q96CM3 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC1.97□□□□□ -2.09
RPUSD4Q96CM3 FSBP-201ENST00000481490 1158 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
RPUSD4Q96CM3 AC112206.3-201ENST00000514578 389 ntBASIC1.97□□□□□ -2.09
RPUSD4Q96CM3 SNORA31.6-201ENST00000516241 130 ntBASIC1.97□□□□□ -2.09
RPUSD4Q96CM3 RNU6-445P-201ENST00000516949 107 ntBASIC1.97□□□□□ -2.09
RPUSD4Q96CM3 AC108471.2-204ENST00000526807 784 ntTSL 5 BASIC1.97□□□□□ -2.09
RPUSD4Q96CM3 RANP3-201ENST00000530970 276 ntBASIC1.97□□□□□ -2.09
RPUSD4Q96CM3 AC012213.3-201ENST00000577199 777 ntBASIC1.97□□□□□ -2.09
RPUSD4Q96CM3 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC1.97□□□□□ -2.09
RPUSD4Q96CM3 NBR2-204ENST00000587322 63 ntBASIC1.97□□□□□ -2.09
RPUSD4Q96CM3 RSL24D1P11-201ENST00000591045 491 ntBASIC1.97□□□□□ -2.09
RPUSD4Q96CM3 AL356280.1-201ENST00000603614 379 ntBASIC1.97□□□□□ -2.09
RPUSD4Q96CM3 AC126118.1-201ENST00000607744 628 ntBASIC1.97□□□□□ -2.09
RPUSD4Q96CM3 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC1.97□□□□□ -2.09
RPUSD4Q96CM3 AC010678.1-201ENST00000614118 713 ntBASIC1.97□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 144.5 ms