Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 RNU6-166P-201ENST00000384371 107 ntBASIC3.39□□□□□ -1.87
PTCHD3Q3KNS1 RNU6-1297P-201ENST00000384415 104 ntBASIC3.39□□□□□ -1.87
PTCHD3Q3KNS1 RNU6-1035P-201ENST00000384477 107 ntBASIC3.39□□□□□ -1.87
PTCHD3Q3KNS1 MIR23A-201ENST00000385245 73 ntBASIC3.39□□□□□ -1.87
PTCHD3Q3KNS1 MIR888-201ENST00000401186 77 ntBASIC3.39□□□□□ -1.87
PTCHD3Q3KNS1 SKA2P1-201ENST00000425592 390 ntBASIC3.39□□□□□ -1.87
PTCHD3Q3KNS1 AP000907.1-201ENST00000428428 510 ntBASIC3.39□□□□□ -1.87
PTCHD3Q3KNS1 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC3.39□□□□□ -1.87
PTCHD3Q3KNS1 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC3.39□□□□□ -1.87
PTCHD3Q3KNS1 AL357552.1-201ENST00000445254 415 ntBASIC3.39□□□□□ -1.87
PTCHD3Q3KNS1 HMGB3P8-201ENST00000449709 577 ntBASIC3.39□□□□□ -1.87
PTCHD3Q3KNS1 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC3.39□□□□□ -1.87
PTCHD3Q3KNS1 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC3.39□□□□□ -1.87
PTCHD3Q3KNS1 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC3.39□□□□□ -1.87
PTCHD3Q3KNS1 Y_RNA.701-201ENST00000516812 110 ntBASIC3.39□□□□□ -1.87
PTCHD3Q3KNS1 SNORA31.19-201ENST00000517079 126 ntBASIC3.39□□□□□ -1.87
PTCHD3Q3KNS1 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC3.39□□□□□ -1.87
PTCHD3Q3KNS1 MIR3186-201ENST00000577404 85 ntBASIC3.39□□□□□ -1.87
PTCHD3Q3KNS1 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC3.39□□□□□ -1.87
PTCHD3Q3KNS1 AL161756.2-201ENST00000604597 246 ntBASIC3.39□□□□□ -1.87
PTCHD3Q3KNS1 RNU6-85P-201ENST00000605989 107 ntBASIC3.39□□□□□ -1.87
PTCHD3Q3KNS1 AL133255.1-201ENST00000606374 441 ntBASIC3.39□□□□□ -1.87
PTCHD3Q3KNS1 AC096577.2-201ENST00000611455 153 ntBASIC3.39□□□□□ -1.87
PTCHD3Q3KNS1 TAS2R13-201ENST00000390677 1637 ntAPPRIS P1 BASIC3.39□□□□□ -1.87
PTCHD3Q3KNS1 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC3.39□□□□□ -1.87
PTCHD3Q3KNS1 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.39□□□□□ -1.87
PTCHD3Q3KNS1 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.39□□□□□ -1.87
PTCHD3Q3KNS1 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
PTCHD3Q3KNS1 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
PTCHD3Q3KNS1 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC3.38□□□□□ -1.87
PTCHD3Q3KNS1 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
PTCHD3Q3KNS1 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC3.38□□□□□ -1.87
PTCHD3Q3KNS1 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC3.38□□□□□ -1.87
PTCHD3Q3KNS1 SNORD3E-201ENST00000362899 217 ntBASIC3.38□□□□□ -1.87
PTCHD3Q3KNS1 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC3.38□□□□□ -1.87
PTCHD3Q3KNS1 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC3.38□□□□□ -1.87
PTCHD3Q3KNS1 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC3.38□□□□□ -1.87
PTCHD3Q3KNS1 RPS15AP6-201ENST00000420703 385 ntBASIC3.38□□□□□ -1.87
PTCHD3Q3KNS1 MTCO2P27-201ENST00000420740 428 ntBASIC3.38□□□□□ -1.87
PTCHD3Q3KNS1 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC3.38□□□□□ -1.87
PTCHD3Q3KNS1 RPL7P37-201ENST00000425095 738 ntBASIC3.38□□□□□ -1.87
PTCHD3Q3KNS1 HMGB1P9-201ENST00000429856 646 ntBASIC3.38□□□□□ -1.87
PTCHD3Q3KNS1 AL157937.1-201ENST00000435092 443 ntTSL 3 BASIC3.38□□□□□ -1.87
PTCHD3Q3KNS1 SNRPEP4-201ENST00000435815 279 ntBASIC3.38□□□□□ -1.87
PTCHD3Q3KNS1 AL078601.1-201ENST00000444542 271 ntBASIC3.38□□□□□ -1.87
PTCHD3Q3KNS1 AL583843.1-201ENST00000456070 346 ntBASIC3.38□□□□□ -1.87
PTCHD3Q3KNS1 AC092798.1-201ENST00000458542 409 ntBASIC3.38□□□□□ -1.87
PTCHD3Q3KNS1 U3.44-201ENST00000458938 192 ntBASIC3.38□□□□□ -1.87
PTCHD3Q3KNS1 RNA5SP310-201ENST00000459084 116 ntBASIC3.38□□□□□ -1.87
PTCHD3Q3KNS1 AC096745.1-201ENST00000509945 370 ntBASIC3.38□□□□□ -1.87
PTCHD3Q3KNS1 AC092436.3-201ENST00000511788 257 ntBASIC3.38□□□□□ -1.87
PTCHD3Q3KNS1 RNU6-559P-201ENST00000516151 98 ntBASIC3.38□□□□□ -1.87
PTCHD3Q3KNS1 RNU6-572P-201ENST00000516724 80 ntBASIC3.38□□□□□ -1.87
PTCHD3Q3KNS1 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC3.38□□□□□ -1.87
PTCHD3Q3KNS1 AC011602.1-201ENST00000546484 331 ntBASIC3.38□□□□□ -1.87
PTCHD3Q3KNS1 AC025423.5-201ENST00000550230 219 ntBASIC3.38□□□□□ -1.87
PTCHD3Q3KNS1 HIGD1AP1-201ENST00000550979 275 ntBASIC3.38□□□□□ -1.87
PTCHD3Q3KNS1 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC3.38□□□□□ -1.87
PTCHD3Q3KNS1 FRG2DP-202ENST00000566967 323 ntBASIC3.38□□□□□ -1.87
PTCHD3Q3KNS1 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC3.38□□□□□ -1.87
PTCHD3Q3KNS1 OR1M4P-201ENST00000589199 287 ntBASIC3.38□□□□□ -1.87
PTCHD3Q3KNS1 NUTF2P8-201ENST00000604593 363 ntBASIC3.38□□□□□ -1.87
PTCHD3Q3KNS1 AL353621.2-201ENST00000605340 133 ntBASIC3.38□□□□□ -1.87
PTCHD3Q3KNS1 RNVU1-4-201ENST00000612985 164 ntBASIC3.38□□□□□ -1.87
PTCHD3Q3KNS1 MIR8058-201ENST00000615737 89 ntBASIC3.38□□□□□ -1.87
PTCHD3Q3KNS1 AL355365.1-201ENST00000616480 294 ntBASIC3.38□□□□□ -1.87
PTCHD3Q3KNS1 AC126177.8-201ENST00000618339 1015 ntBASIC3.38□□□□□ -1.87
PTCHD3Q3KNS1 XIST_intron.1-201ENST00000619444 68 ntBASIC3.38□□□□□ -1.87
PTCHD3Q3KNS1 AC092628.2-201ENST00000622492 339 ntBASIC3.38□□□□□ -1.87
PTCHD3Q3KNS1 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC3.38□□□□□ -1.87
PTCHD3Q3KNS1 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC3.38□□□□□ -1.87
PTCHD3Q3KNS1 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC3.38□□□□□ -1.87
PTCHD3Q3KNS1 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC3.38□□□□□ -1.87
PTCHD3Q3KNS1 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC3.38□□□□□ -1.87
PTCHD3Q3KNS1 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
PTCHD3Q3KNS1 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC3.37□□□□□ -1.87
PTCHD3Q3KNS1 AF117829.1-206ENST00000621883 3802 ntBASIC3.37□□□□□ -1.87
PTCHD3Q3KNS1 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC3.37□□□□□ -1.87
PTCHD3Q3KNS1 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC3.37□□□□□ -1.87
PTCHD3Q3KNS1 ADGRG2-206ENST00000360279 4702 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
PTCHD3Q3KNS1 RNU6-778P-201ENST00000363269 103 ntBASIC3.37□□□□□ -1.87
PTCHD3Q3KNS1 RNU6-1329P-201ENST00000365664 107 ntBASIC3.37□□□□□ -1.87
PTCHD3Q3KNS1 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
PTCHD3Q3KNS1 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC3.37□□□□□ -1.87
PTCHD3Q3KNS1 MIR34A-201ENST00000385130 110 ntBASIC3.37□□□□□ -1.87
PTCHD3Q3KNS1 RPS4XP3-201ENST00000398541 413 ntBASIC3.37□□□□□ -1.87
PTCHD3Q3KNS1 RPL26P27-201ENST00000414397 437 ntBASIC3.37□□□□□ -1.87
PTCHD3Q3KNS1 ARF4P2-201ENST00000430209 526 ntBASIC3.37□□□□□ -1.87
PTCHD3Q3KNS1 LINC01810-201ENST00000450397 411 ntTSL 3 BASIC3.37□□□□□ -1.87
PTCHD3Q3KNS1 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC3.37□□□□□ -1.87
PTCHD3Q3KNS1 RPL12P25-201ENST00000455592 494 ntBASIC3.37□□□□□ -1.87
PTCHD3Q3KNS1 LINC01510-203ENST00000458082 626 ntTSL 3 BASIC3.37□□□□□ -1.87
PTCHD3Q3KNS1 AC130509.1-201ENST00000464158 433 ntBASIC3.37□□□□□ -1.87
PTCHD3Q3KNS1 AC104472.2-201ENST00000469035 601 ntBASIC3.37□□□□□ -1.87
PTCHD3Q3KNS1 MTND4P17-201ENST00000470444 350 ntBASIC3.37□□□□□ -1.87
PTCHD3Q3KNS1 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC3.37□□□□□ -1.87
PTCHD3Q3KNS1 HMGB3P15-201ENST00000507326 574 ntBASIC3.37□□□□□ -1.87
PTCHD3Q3KNS1 SNORA70.19-201ENST00000516717 90 ntBASIC3.37□□□□□ -1.87
PTCHD3Q3KNS1 AC136777.1-201ENST00000517765 369 ntTSL 4 BASIC3.37□□□□□ -1.87
PTCHD3Q3KNS1 AP005597.4-201ENST00000526762 229 ntBASIC3.37□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 83.9 ms