Protein–RNA interactions for Protein: Q00056

HOXA4, Homeobox protein Hox-A4, humanhuman

Predicted RBP Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4Q00056 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
HOXA4Q00056 SPINK1-201ENST00000296695 542 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
HOXA4Q00056 FTLP6-201ENST00000355274 422 ntBASIC3.17□□□□□ -1.9
HOXA4Q00056 RNU6-50P-201ENST00000362356 103 ntBASIC3.17□□□□□ -1.9
HOXA4Q00056 U8.8-201ENST00000365399 135 ntBASIC3.17□□□□□ -1.9
HOXA4Q00056 RNU2-71P-201ENST00000411395 189 ntBASIC3.17□□□□□ -1.9
HOXA4Q00056 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC3.17□□□□□ -1.9
HOXA4Q00056 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
HOXA4Q00056 AL159987.2-201ENST00000432754 307 ntBASIC3.17□□□□□ -1.9
HOXA4Q00056 IPO7P1-201ENST00000442031 636 ntBASIC3.17□□□□□ -1.9
HOXA4Q00056 AL078601.1-201ENST00000444542 271 ntBASIC3.17□□□□□ -1.9
HOXA4Q00056 AL500522.2-201ENST00000448562 343 ntBASIC3.17□□□□□ -1.9
HOXA4Q00056 BTF3P15-201ENST00000455606 336 ntBASIC3.17□□□□□ -1.9
HOXA4Q00056 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC3.17□□□□□ -1.9
HOXA4Q00056 AC105758.1-201ENST00000506038 399 ntBASIC3.17□□□□□ -1.9
HOXA4Q00056 GYPA-208ENST00000512064 441 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
HOXA4Q00056 AC023141.12-201ENST00000512399 199 ntBASIC3.17□□□□□ -1.9
HOXA4Q00056 ACA59.1-201ENST00000515966 143 ntBASIC3.17□□□□□ -1.9
HOXA4Q00056 COX6CP5-201ENST00000527162 228 ntBASIC3.17□□□□□ -1.9
HOXA4Q00056 AP004242.1-201ENST00000533701 349 ntBASIC3.17□□□□□ -1.9
HOXA4Q00056 AL117187.1-201ENST00000555482 181 ntBASIC3.17□□□□□ -1.9
HOXA4Q00056 SUB1P3-201ENST00000564581 315 ntBASIC3.17□□□□□ -1.9
HOXA4Q00056 AC006130.2-201ENST00000586202 326 ntBASIC3.17□□□□□ -1.9
HOXA4Q00056 AC008121.1-201ENST00000603244 268 ntBASIC3.17□□□□□ -1.9
HOXA4Q00056 AC009314.1-201ENST00000603871 304 ntBASIC3.17□□□□□ -1.9
HOXA4Q00056 AL161629.2-201ENST00000615347 275 ntBASIC3.17□□□□□ -1.9
HOXA4Q00056 AL132822.1-201ENST00000617063 513 ntBASIC3.17□□□□□ -1.9
HOXA4Q00056 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
HOXA4Q00056 AC090617.7-201ENST00000623952 126 ntBASIC3.17□□□□□ -1.9
HOXA4Q00056 TEX41-300ENST00000631048 69 ntTSL 5 BASIC3.17□□□□□ -1.9
HOXA4Q00056 U6.99-201ENST00000637524 83 ntBASIC3.17□□□□□ -1.9
HOXA4Q00056 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
HOXA4Q00056 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
HOXA4Q00056 WDR49-207ENST00000479765 2108 ntTSL 2 BASIC3.17□□□□□ -1.9
HOXA4Q00056 UACA-202ENST00000379983 4859 ntAPPRIS ALT2 TSL 5 BASIC3.17□□□□□ -1.9
HOXA4Q00056 ADAM29-211ENST00000514159 3010 ntAPPRIS P1 TSL 4 BASIC3.17□□□□□ -1.9
HOXA4Q00056 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
HOXA4Q00056 PTER-201ENST00000298942 3448 ntTSL 5 BASIC3.16□□□□□ -1.9
HOXA4Q00056 SLITRK4-203ENST00000596188 8545 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
HOXA4Q00056 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
HOXA4Q00056 AC007656.2-201ENST00000624902 4547 ntBASIC3.16□□□□□ -1.9
HOXA4Q00056 SLC15A5-201ENST00000344941 2923 ntAPPRIS P1 TSL 5 BASIC3.16□□□□□ -1.9
HOXA4Q00056 RNU6-428P-201ENST00000362942 107 ntBASIC3.16□□□□□ -1.9
HOXA4Q00056 RNU6-99P-201ENST00000364721 107 ntBASIC3.16□□□□□ -1.9
HOXA4Q00056 RNU1-115P-201ENST00000365329 160 ntBASIC3.16□□□□□ -1.9
HOXA4Q00056 CD84-204ENST00000368048 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC3.16□□□□□ -1.9
HOXA4Q00056 AIF1-202ENST00000376049 524 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
HOXA4Q00056 DEFB109C-201ENST00000382575 264 ntBASIC3.16□□□□□ -1.9
HOXA4Q00056 DEFB109B-201ENST00000382656 264 ntBASIC3.16□□□□□ -1.9
HOXA4Q00056 RNU6-26P-201ENST00000383985 107 ntBASIC3.16□□□□□ -1.9
HOXA4Q00056 RNU6-933P-201ENST00000384424 107 ntBASIC3.16□□□□□ -1.9
HOXA4Q00056 HMGB3P2-201ENST00000411913 584 ntBASIC3.16□□□□□ -1.9
HOXA4Q00056 AL117339.3-201ENST00000418733 162 ntBASIC3.16□□□□□ -1.9
HOXA4Q00056 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC3.16□□□□□ -1.9
HOXA4Q00056 YPEL5P1-201ENST00000419731 367 ntBASIC3.16□□□□□ -1.9
HOXA4Q00056 MTCYBP10-201ENST00000424905 650 ntBASIC3.16□□□□□ -1.9
HOXA4Q00056 AC098614.2-201ENST00000426040 255 ntBASIC3.16□□□□□ -1.9
HOXA4Q00056 AL512844.2-201ENST00000433990 593 ntBASIC3.16□□□□□ -1.9
HOXA4Q00056 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC3.16□□□□□ -1.9
HOXA4Q00056 NDUFB4P6-201ENST00000436819 366 ntBASIC3.16□□□□□ -1.9
HOXA4Q00056 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC3.16□□□□□ -1.9
HOXA4Q00056 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC3.16□□□□□ -1.9
HOXA4Q00056 RPL17P19-201ENST00000489069 552 ntBASIC3.16□□□□□ -1.9
HOXA4Q00056 Y_RNA.687-201ENST00000516558 91 ntBASIC3.16□□□□□ -1.9
HOXA4Q00056 RNU4-77P-201ENST00000516692 156 ntBASIC3.16□□□□□ -1.9
HOXA4Q00056 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
HOXA4Q00056 AC023442.1-201ENST00000531247 422 ntBASIC3.16□□□□□ -1.9
HOXA4Q00056 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC3.16□□□□□ -1.9
HOXA4Q00056 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC3.16□□□□□ -1.9
HOXA4Q00056 AC008269.2-201ENST00000561915 1105 ntBASIC3.16□□□□□ -1.9
HOXA4Q00056 MIR3671-201ENST00000580455 88 ntBASIC3.16□□□□□ -1.9
HOXA4Q00056 MIR4503-201ENST00000582187 83 ntBASIC3.16□□□□□ -1.9
HOXA4Q00056 AL137849.1-201ENST00000604767 169 ntBASIC3.16□□□□□ -1.9
HOXA4Q00056 SNORD58B-201ENST00000607313 66 ntBASIC3.16□□□□□ -1.9
HOXA4Q00056 7SK.10-201ENST00000621414 298 ntBASIC3.16□□□□□ -1.9
HOXA4Q00056 ALG13-230ENST00000623189 458 ntTSL 3 BASIC3.16□□□□□ -1.9
HOXA4Q00056 LINC01232-201ENST00000625254 836 ntTSL 5 BASIC3.16□□□□□ -1.9
HOXA4Q00056 MPP6-209ENST00000625307 126 ntTSL 5 BASIC3.16□□□□□ -1.9
HOXA4Q00056 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC3.16□□□□□ -1.9
HOXA4Q00056 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC3.16□□□□□ -1.9
HOXA4Q00056 CD80-201ENST00000264246 2725 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
HOXA4Q00056 IQCH-206ENST00000546225 3112 ntTSL 5 BASIC3.16□□□□□ -1.9
HOXA4Q00056 CEP170-215ENST00000481987 3031 ntTSL 5 BASIC3.16□□□□□ -1.9
HOXA4Q00056 LINC01094-203ENST00000504675 1985 ntTSL 2 BASIC3.16□□□□□ -1.9
HOXA4Q00056 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
HOXA4Q00056 TM4SF18-201ENST00000296059 3852 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
HOXA4Q00056 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC3.16□□□□□ -1.9
HOXA4Q00056 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC3.15□□□□□ -1.9
HOXA4Q00056 POSTN-203ENST00000379747 3373 ntAPPRIS P3 TSL 1 (best) BASIC3.15□□□□□ -1.9
HOXA4Q00056 AC005592.1-201ENST00000566527 1640 ntBASIC3.15□□□□□ -1.9
HOXA4Q00056 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC3.15□□□□□ -1.9
HOXA4Q00056 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC3.15□□□□□ -1.9
HOXA4Q00056 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC3.15□□□□□ -1.9
HOXA4Q00056 FLG-AS1-205ENST00000445097 2857 ntTSL 1 (best) BASIC3.15□□□□□ -1.9
HOXA4Q00056 MTND5P1-201ENST00000445440 1375 ntBASIC3.15□□□□□ -1.9
HOXA4Q00056 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC3.15□□□□□ -1.9
HOXA4Q00056 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC3.15□□□□□ -1.9
HOXA4Q00056 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC3.15□□□□□ -1.9
HOXA4Q00056 RNU1-64P-201ENST00000365443 163 ntBASIC3.15□□□□□ -1.91
HOXA4Q00056 Y_RNA.557-201ENST00000384680 107 ntBASIC3.15□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 89 ms