Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 RNU6-1200P-201ENST00000384162 107 ntBASIC1.54□□□□□ -2.16
FOXA1P55317 AL627390.1-201ENST00000396055 340 ntBASIC1.54□□□□□ -2.16
FOXA1P55317 RNU6-1140P-201ENST00000410517 106 ntBASIC1.54□□□□□ -2.16
FOXA1P55317 AL158840.1-201ENST00000414132 523 ntTSL 3 BASIC1.54□□□□□ -2.16
FOXA1P55317 CYCSP49-201ENST00000420810 319 ntBASIC1.54□□□□□ -2.16
FOXA1P55317 LINC01724-201ENST00000430519 621 ntTSL 3 BASIC1.54□□□□□ -2.16
FOXA1P55317 AL161651.1-201ENST00000440882 223 ntBASIC1.54□□□□□ -2.16
FOXA1P55317 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC1.54□□□□□ -2.16
FOXA1P55317 SSXP1-201ENST00000453640 473 ntBASIC1.54□□□□□ -2.16
FOXA1P55317 CKS1BP2-201ENST00000497342 240 ntBASIC1.54□□□□□ -2.16
FOXA1P55317 AC093752.1-212ENST00000500559 453 ntTSL 1 (best) BASIC1.54□□□□□ -2.16
FOXA1P55317 LINC02377-202ENST00000505436 523 ntTSL 5 BASIC1.54□□□□□ -2.16
FOXA1P55317 LINC01216-201ENST00000515728 824 ntTSL 5 BASIC1.54□□□□□ -2.16
FOXA1P55317 RN7SKP219-201ENST00000516825 296 ntBASIC1.54□□□□□ -2.16
FOXA1P55317 SNORD19.2-201ENST00000516978 73 ntBASIC1.54□□□□□ -2.16
FOXA1P55317 SCARNA3-201ENST00000517097 143 ntBASIC1.54□□□□□ -2.16
FOXA1P55317 AP005902.1-201ENST00000521358 186 ntBASIC1.54□□□□□ -2.16
FOXA1P55317 AC108471.2-204ENST00000526807 784 ntTSL 5 BASIC1.54□□□□□ -2.16
FOXA1P55317 AC023050.2-201ENST00000544968 387 ntBASIC1.54□□□□□ -2.16
FOXA1P55317 AL157955.1-201ENST00000554433 331 ntTSL 3 BASIC1.54□□□□□ -2.16
FOXA1P55317 AL121821.2-201ENST00000556081 394 ntBASIC1.54□□□□□ -2.16
FOXA1P55317 LINC2194-202ENST00000567624 506 ntTSL 3 BASIC1.54□□□□□ -2.16
FOXA1P55317 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC1.54□□□□□ -2.16
FOXA1P55317 AC011494.1-201ENST00000596454 237 ntBASIC1.54□□□□□ -2.16
FOXA1P55317 KC877982.1-201ENST00000602313 470 ntBASIC1.54□□□□□ -2.16
FOXA1P55317 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC1.54□□□□□ -2.16
FOXA1P55317 AC091152.3-201ENST00000604227 325 ntBASIC1.54□□□□□ -2.16
FOXA1P55317 AL021997.1-201ENST00000605757 193 ntBASIC1.54□□□□□ -2.16
FOXA1P55317 RNF219-AS1-205ENST00000605996 792 ntTSL 5 BASIC1.54□□□□□ -2.16
FOXA1P55317 AC107952.2-201ENST00000606048 486 ntBASIC1.54□□□□□ -2.16
FOXA1P55317 AC108747.1-201ENST00000609508 535 ntBASIC1.54□□□□□ -2.16
FOXA1P55317 AC245297.3-203ENST00000612135 405 ntTSL 5 BASIC1.54□□□□□ -2.16
FOXA1P55317 AC011939.3-201ENST00000613686 466 ntBASIC1.54□□□□□ -2.16
FOXA1P55317 AL445584.2-201ENST00000614030 616 ntTSL 5 BASIC1.54□□□□□ -2.16
FOXA1P55317 OR5H6-201ENST00000615035 1113 ntAPPRIS P1 BASIC1.54□□□□□ -2.16
FOXA1P55317 MTND4P23-201ENST00000447723 1363 ntBASIC1.54□□□□□ -2.16
FOXA1P55317 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC1.54□□□□□ -2.16
FOXA1P55317 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC1.53□□□□□ -2.16
FOXA1P55317 AL391994.1-201ENST00000254724 282 ntBASIC1.53□□□□□ -2.16
FOXA1P55317 Y_RNA.18-201ENST00000362461 102 ntBASIC1.53□□□□□ -2.16
FOXA1P55317 SNORD113-6-201ENST00000363345 75 ntBASIC1.53□□□□□ -2.16
FOXA1P55317 RNU6-188P-201ENST00000364207 107 ntBASIC1.53□□□□□ -2.16
FOXA1P55317 RNU6-234P-201ENST00000365229 104 ntBASIC1.53□□□□□ -2.16
FOXA1P55317 RNY3P13-201ENST00000365542 102 ntBASIC1.53□□□□□ -2.16
FOXA1P55317 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC1.53□□□□□ -2.16
FOXA1P55317 MIR147B-201ENST00000390185 80 ntBASIC1.53□□□□□ -2.16
FOXA1P55317 U8.14-201ENST00000390843 143 ntBASIC1.53□□□□□ -2.16
FOXA1P55317 RPS20P2-201ENST00000402520 389 ntBASIC1.53□□□□□ -2.16
FOXA1P55317 ELOCP17-201ENST00000414751 326 ntBASIC1.53□□□□□ -2.16
FOXA1P55317 CYCSP48-201ENST00000417124 323 ntBASIC1.53□□□□□ -2.16
FOXA1P55317 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC1.53□□□□□ -2.16
FOXA1P55317 AC016710.1-201ENST00000421326 466 ntTSL 3 BASIC1.53□□□□□ -2.16
FOXA1P55317 AL596220.1-202ENST00000429768 314 ntTSL 3 BASIC1.53□□□□□ -2.16
FOXA1P55317 AL592045.1-201ENST00000429867 352 ntBASIC1.53□□□□□ -2.16
FOXA1P55317 LINC00392-201ENST00000430033 557 ntTSL 3 BASIC1.53□□□□□ -2.16
FOXA1P55317 MICF-203ENST00000432679 129 ntBASIC1.53□□□□□ -2.16
FOXA1P55317 KCNJ6-AS1-201ENST00000435001 357 ntTSL 5 BASIC1.53□□□□□ -2.16
FOXA1P55317 NEFMP1-201ENST00000443423 1006 ntBASIC1.53□□□□□ -2.16
FOXA1P55317 FGF14-AS1-202ENST00000451630 321 ntTSL 2 BASIC1.53□□□□□ -2.16
FOXA1P55317 MTND5P30-201ENST00000452896 1731 ntBASIC1.53□□□□□ -2.16
FOXA1P55317 AC026801.1-201ENST00000497178 464 ntBASIC1.53□□□□□ -2.16
FOXA1P55317 HMGB3P17-201ENST00000504195 649 ntBASIC1.53□□□□□ -2.16
FOXA1P55317 AC034244.1-201ENST00000507687 207 ntBASIC1.53□□□□□ -2.16
FOXA1P55317 AC117522.2-201ENST00000510049 657 ntBASIC1.53□□□□□ -2.16
FOXA1P55317 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC1.53□□□□□ -2.16
FOXA1P55317 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC1.53□□□□□ -2.16
FOXA1P55317 ZNF706-202ENST00000517844 604 ntAPPRIS P1 TSL 3 BASIC1.53□□□□□ -2.16
FOXA1P55317 AP003498.1-201ENST00000532530 347 ntTSL 3 BASIC1.53□□□□□ -2.16
FOXA1P55317 LINC02235-201ENST00000534675 466 ntTSL 5 BASIC1.53□□□□□ -2.16
FOXA1P55317 AC010186.2-204ENST00000537668 439 ntBASIC1.53□□□□□ -2.16
FOXA1P55317 AC123904.2-201ENST00000548059 300 ntBASIC1.53□□□□□ -2.16
FOXA1P55317 AL135746.1-201ENST00000554205 547 ntTSL 3 BASIC1.53□□□□□ -2.16
FOXA1P55317 RPS3AP4-201ENST00000555161 764 ntBASIC1.53□□□□□ -2.16
FOXA1P55317 ROCK1P1-201ENST00000573767 549 ntBASIC1.53□□□□□ -2.16
FOXA1P55317 MIR5571-201ENST00000577998 113 ntBASIC1.53□□□□□ -2.16
FOXA1P55317 MIR3146-201ENST00000580367 79 ntBASIC1.53□□□□□ -2.16
FOXA1P55317 AC069114.1-201ENST00000580927 287 ntTSL 2 BASIC1.53□□□□□ -2.16
FOXA1P55317 MIR4765-201ENST00000585007 77 ntBASIC1.53□□□□□ -2.16
FOXA1P55317 MIR4999-201ENST00000585029 91 ntBASIC1.53□□□□□ -2.16
FOXA1P55317 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC1.53□□□□□ -2.16
FOXA1P55317 AL358072.1-201ENST00000604156 575 ntBASIC1.53□□□□□ -2.16
FOXA1P55317 AC112187.2-201ENST00000604345 283 ntBASIC1.53□□□□□ -2.16
FOXA1P55317 AC007363.1-201ENST00000604736 620 ntBASIC1.53□□□□□ -2.16
FOXA1P55317 C8orf59-209ENST00000612977 586 ntAPPRIS P1 TSL 2 BASIC1.53□□□□□ -2.16
FOXA1P55317 AC010678.1-201ENST00000614118 713 ntBASIC1.53□□□□□ -2.16
FOXA1P55317 AL031667.3-201ENST00000620124 655 ntBASIC1.53□□□□□ -2.16
FOXA1P55317 AP002782.1-201ENST00000623107 614 ntBASIC1.53□□□□□ -2.16
FOXA1P55317 AC103710.2-202ENST00000641454 2853 ntBASIC1.53□□□□□ -2.17
FOXA1P55317 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC1.52□□□□□ -2.17
FOXA1P55317 RNY4P24-201ENST00000362735 96 ntBASIC1.52□□□□□ -2.17
FOXA1P55317 Y_RNA.97-201ENST00000363094 102 ntBASIC1.52□□□□□ -2.17
FOXA1P55317 RNU6-288P-201ENST00000363690 104 ntBASIC1.52□□□□□ -2.17
FOXA1P55317 RNU6-660P-201ENST00000364566 109 ntBASIC1.52□□□□□ -2.17
FOXA1P55317 RNA5SP213-201ENST00000391031 106 ntBASIC1.52□□□□□ -2.17
FOXA1P55317 CIR1P3-201ENST00000405137 479 ntBASIC1.52□□□□□ -2.17
FOXA1P55317 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC1.52□□□□□ -2.17
FOXA1P55317 AL162726.4-201ENST00000422010 673 ntTSL 5 BASIC1.52□□□□□ -2.17
FOXA1P55317 RPL31P63-201ENST00000422565 375 ntBASIC1.52□□□□□ -2.17
FOXA1P55317 RAC1P6-201ENST00000423911 575 ntBASIC1.52□□□□□ -2.17
FOXA1P55317 RPL30P4-201ENST00000429309 333 ntBASIC1.52□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 96.8 ms