Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AL121917.1-203ENST00000605534 577 ntBASIC3.71□□□□□ -1.82
MSX2P35548 MIR3976-201ENST00000606807 139 ntBASIC3.71□□□□□ -1.82
MSX2P35548 AL691447.3-201ENST00000635020 330 ntBASIC3.71□□□□□ -1.82
MSX2P35548 MCF2-203ENST00000370576 3688 ntAPPRIS P3 TSL 1 (best) BASIC3.71□□□□□ -1.82
MSX2P35548 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC3.71□□□□□ -1.82
MSX2P35548 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC3.71□□□□□ -1.82
MSX2P35548 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC3.71□□□□□ -1.82
MSX2P35548 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC3.71□□□□□ -1.82
MSX2P35548 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
MSX2P35548 GABRG2-222ENST00000639975 3662 ntTSL 5 BASIC3.71□□□□□ -1.82
MSX2P35548 MFN1-201ENST00000263969 2754 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
MSX2P35548 MS4A14-201ENST00000300187 2997 ntAPPRIS P3 TSL 1 (best) BASIC3.7□□□□□ -1.82
MSX2P35548 SDAD1P2-201ENST00000441308 2028 ntBASIC3.7□□□□□ -1.82
MSX2P35548 ACSM3-201ENST00000289416 2845 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
MSX2P35548 SLC2A2-201ENST00000314251 3210 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
MSX2P35548 FAM111B-206ENST00000620384 3405 ntAPPRIS P1 TSL 2 BASIC3.7□□□□□ -1.82
MSX2P35548 RNU6-512P-201ENST00000364438 103 ntBASIC3.7□□□□□ -1.82
MSX2P35548 U8.8-201ENST00000365399 135 ntBASIC3.7□□□□□ -1.82
MSX2P35548 SNORD6-201ENST00000365444 73 ntBASIC3.7□□□□□ -1.82
MSX2P35548 Y_RNA.376-201ENST00000365638 108 ntBASIC3.7□□□□□ -1.82
MSX2P35548 RNU4-70P-201ENST00000384579 139 ntBASIC3.7□□□□□ -1.82
MSX2P35548 Y_RNA.551-201ENST00000384661 102 ntBASIC3.7□□□□□ -1.82
MSX2P35548 MIR129-1-201ENST00000384972 72 ntBASIC3.7□□□□□ -1.82
MSX2P35548 IGLV5-37-201ENST00000390300 374 ntAPPRIS P1 BASIC3.7□□□□□ -1.82
MSX2P35548 U3.22-201ENST00000391120 215 ntBASIC3.7□□□□□ -1.82
MSX2P35548 U3.42-201ENST00000408746 214 ntBASIC3.7□□□□□ -1.82
MSX2P35548 RNA5SP129-201ENST00000410276 118 ntBASIC3.7□□□□□ -1.82
MSX2P35548 HSPE1P12-201ENST00000412576 301 ntBASIC3.7□□□□□ -1.82
MSX2P35548 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC3.7□□□□□ -1.82
MSX2P35548 AL080313.1-201ENST00000434947 405 ntTSL 2 BASIC3.7□□□□□ -1.82
MSX2P35548 ATP6V0E1P2-201ENST00000441771 245 ntBASIC3.7□□□□□ -1.82
MSX2P35548 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC3.7□□□□□ -1.82
MSX2P35548 HMGN2P7-201ENST00000456186 273 ntBASIC3.7□□□□□ -1.82
MSX2P35548 HMGN2P16-201ENST00000456802 261 ntBASIC3.7□□□□□ -1.82
MSX2P35548 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC3.7□□□□□ -1.82
MSX2P35548 RPL21P104-201ENST00000464143 478 ntBASIC3.7□□□□□ -1.82
MSX2P35548 HMGN2P13-201ENST00000476476 274 ntBASIC3.7□□□□□ -1.82
MSX2P35548 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC3.7□□□□□ -1.82
MSX2P35548 ARHGEF3-AS1-202ENST00000495939 336 ntTSL 3 BASIC3.7□□□□□ -1.82
MSX2P35548 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC3.7□□□□□ -1.82
MSX2P35548 AC010255.3-204ENST00000514637 454 ntTSL 2 BASIC3.7□□□□□ -1.82
MSX2P35548 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC3.7□□□□□ -1.82
MSX2P35548 SNORA25.11-201ENST00000515935 105 ntBASIC3.7□□□□□ -1.82
MSX2P35548 MIR892C-201ENST00000516410 77 ntBASIC3.7□□□□□ -1.82
MSX2P35548 RNA5SP468-201ENST00000516782 93 ntBASIC3.7□□□□□ -1.82
MSX2P35548 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC3.7□□□□□ -1.82
MSX2P35548 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC3.7□□□□□ -1.82
MSX2P35548 SOX5-AS1-201ENST00000539583 573 ntTSL 4 BASIC3.7□□□□□ -1.82
MSX2P35548 SARNP-203ENST00000552080 726 ntTSL 2 BASIC3.7□□□□□ -1.82
MSX2P35548 AL157871.3-201ENST00000557231 293 ntBASIC3.7□□□□□ -1.82
MSX2P35548 MED28P6-201ENST00000558776 231 ntBASIC3.7□□□□□ -1.82
MSX2P35548 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
MSX2P35548 AC244505.7-201ENST00000599675 272 ntBASIC3.7□□□□□ -1.82
MSX2P35548 AC012531.5-201ENST00000611375 151 ntBASIC3.7□□□□□ -1.82
MSX2P35548 FP236240.3-201ENST00000623061 327 ntBASIC3.7□□□□□ -1.82
MSX2P35548 CRB1-201ENST00000367397 9023 ntTSL 2 BASIC3.7□□□□□ -1.82
MSX2P35548 AC010615.1-201ENST00000594254 1764 ntBASIC3.7□□□□□ -1.82
MSX2P35548 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
MSX2P35548 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
MSX2P35548 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC3.7□□□□□ -1.82
MSX2P35548 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC3.7□□□□□ -1.82
MSX2P35548 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC3.69□□□□□ -1.82
MSX2P35548 AC087521.2-201ENST00000499066 2190 ntTSL 2 BASIC3.69□□□□□ -1.82
MSX2P35548 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
MSX2P35548 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
MSX2P35548 HSP90AA4P-202ENST00000506915 2228 ntBASIC3.69□□□□□ -1.82
MSX2P35548 NKTR-219ENST00000617821 7319 ntTSL 5 BASIC3.69□□□□□ -1.82
MSX2P35548 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
MSX2P35548 RNU5A-1-201ENST00000362698 116 ntBASIC3.69□□□□□ -1.82
MSX2P35548 RNU6-384P-201ENST00000364900 104 ntBASIC3.69□□□□□ -1.82
MSX2P35548 RNU6-806P-201ENST00000365147 105 ntBASIC3.69□□□□□ -1.82
MSX2P35548 Y_RNA.518-201ENST00000384552 113 ntBASIC3.69□□□□□ -1.82
MSX2P35548 AL513475.1-201ENST00000406602 315 ntBASIC3.69□□□□□ -1.82
MSX2P35548 RNU2-64P-201ENST00000411315 191 ntBASIC3.69□□□□□ -1.82
MSX2P35548 RPL17P36-201ENST00000420302 549 ntBASIC3.69□□□□□ -1.82
MSX2P35548 AC092573.2-201ENST00000434546 243 ntBASIC3.69□□□□□ -1.82
MSX2P35548 AC083863.1-201ENST00000438811 231 ntBASIC3.69□□□□□ -1.82
MSX2P35548 SUMO1P3-201ENST00000439961 304 ntBASIC3.69□□□□□ -1.82
MSX2P35548 RPS3AP12-201ENST00000443616 753 ntBASIC3.69□□□□□ -1.82
MSX2P35548 FCF1P4-201ENST00000448326 183 ntBASIC3.69□□□□□ -1.82
MSX2P35548 MTCO3P8-201ENST00000453691 755 ntBASIC3.69□□□□□ -1.82
MSX2P35548 CEACAMP4-201ENST00000457676 421 ntBASIC3.69□□□□□ -1.82
MSX2P35548 RPL7P5-201ENST00000471472 736 ntBASIC3.69□□□□□ -1.82
MSX2P35548 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC3.69□□□□□ -1.82
MSX2P35548 VN1R104P-201ENST00000505115 1009 ntBASIC3.69□□□□□ -1.82
MSX2P35548 MIR4715-201ENST00000584117 79 ntBASIC3.69□□□□□ -1.82
MSX2P35548 VN1R91P-201ENST00000594377 169 ntBASIC3.69□□□□□ -1.82
MSX2P35548 AL161798.1-201ENST00000604630 131 ntBASIC3.69□□□□□ -1.82
MSX2P35548 AC107294.1-201ENST00000609524 467 ntBASIC3.69□□□□□ -1.82
MSX2P35548 MIR6868-201ENST00000611215 58 ntBASIC3.69□□□□□ -1.82
MSX2P35548 MIR6830-201ENST00000636015 70 ntBASIC3.69□□□□□ -1.82
MSX2P35548 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC3.69□□□□□ -1.82
MSX2P35548 CCNYL2-202ENST00000637719 3311 ntTSL 2 BASIC3.69□□□□□ -1.82
MSX2P35548 AC004160.1-212ENST00000421121 2078 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
MSX2P35548 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
MSX2P35548 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC3.69□□□□□ -1.82
MSX2P35548 PGGT1B-203ENST00000419445 9545 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
MSX2P35548 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC3.68□□□□□ -1.82
MSX2P35548 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC3.68□□□□□ -1.82
MSX2P35548 SNCA-213ENST00000618500 3022 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 143.3 ms