Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 SNORA62.6-201ENST00000606322 83 ntBASIC4.16□□□□□ -1.74
COL6A1P12109 AC090740.1-201ENST00000623193 2262 ntBASIC4.16□□□□□ -1.74
COL6A1P12109 RAPH1-203ENST00000374493 3909 ntAPPRIS ALT2 TSL 5 BASIC4.16□□□□□ -1.74
COL6A1P12109 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
COL6A1P12109 C6orf10-209ENST00000612031 2179 ntAPPRIS ALT2 TSL 5 BASIC4.16□□□□□ -1.74
COL6A1P12109 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC4.16□□□□□ -1.74
COL6A1P12109 NKTR-219ENST00000617821 7319 ntTSL 5 BASIC4.15□□□□□ -1.74
COL6A1P12109 EFHC1-205ENST00000538167 5308 ntTSL 5 BASIC4.15□□□□□ -1.74
COL6A1P12109 ABCC9-201ENST00000261200 8293 ntAPPRIS P5 TSL 5 BASIC4.15□□□□□ -1.74
COL6A1P12109 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.74
COL6A1P12109 DEFB108F-201ENST00000344638 222 ntBASIC4.15□□□□□ -1.75
COL6A1P12109 RNA5SP52-201ENST00000362448 134 ntBASIC4.15□□□□□ -1.75
COL6A1P12109 RNU1-115P-201ENST00000365329 160 ntBASIC4.15□□□□□ -1.75
COL6A1P12109 Y_RNA.510-201ENST00000384511 114 ntBASIC4.15□□□□□ -1.75
COL6A1P12109 RNU6-95P-201ENST00000384697 107 ntBASIC4.15□□□□□ -1.75
COL6A1P12109 SNORA48.5-201ENST00000391143 135 ntBASIC4.15□□□□□ -1.75
COL6A1P12109 AC008267.5-201ENST00000424928 265 ntBASIC4.15□□□□□ -1.75
COL6A1P12109 GSTA11P-201ENST00000452866 669 ntBASIC4.15□□□□□ -1.75
COL6A1P12109 AL136097.1-201ENST00000456945 913 ntBASIC4.15□□□□□ -1.75
COL6A1P12109 RPL31P60-201ENST00000478450 367 ntBASIC4.15□□□□□ -1.75
COL6A1P12109 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC4.15□□□□□ -1.75
COL6A1P12109 AC116655.1-201ENST00000508324 901 ntBASIC4.15□□□□□ -1.75
COL6A1P12109 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC4.15□□□□□ -1.75
COL6A1P12109 RNU2-27P-201ENST00000516185 142 ntBASIC4.15□□□□□ -1.75
COL6A1P12109 RNU6-699P-201ENST00000517081 110 ntBASIC4.15□□□□□ -1.75
COL6A1P12109 RNU6-264P-201ENST00000517134 104 ntBASIC4.15□□□□□ -1.75
COL6A1P12109 RNU6-711P-201ENST00000517255 106 ntBASIC4.15□□□□□ -1.75
COL6A1P12109 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
COL6A1P12109 OR4H12P-201ENST00000556269 907 ntBASIC4.15□□□□□ -1.75
COL6A1P12109 AC007619.2-201ENST00000605743 379 ntBASIC4.15□□□□□ -1.75
COL6A1P12109 AL450472.3-201ENST00000615578 367 ntBASIC4.15□□□□□ -1.75
COL6A1P12109 AL773545.4-201ENST00000637262 310 ntBASIC4.15□□□□□ -1.75
COL6A1P12109 AL513478.4-201ENST00000641636 310 ntBASIC4.15□□□□□ -1.75
COL6A1P12109 AL732372.2-225ENST00000642124 456 ntBASIC4.15□□□□□ -1.75
COL6A1P12109 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
COL6A1P12109 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC4.15□□□□□ -1.75
COL6A1P12109 OSBPL8-202ENST00000393249 7047 ntAPPRIS ALT1 TSL 1 (best) BASIC4.15□□□□□ -1.75
COL6A1P12109 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC4.15□□□□□ -1.75
COL6A1P12109 RNF38-201ENST00000259605 5012 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
COL6A1P12109 PCDH15-234ENST00000622048 6820 ntTSL 5 BASIC4.15□□□□□ -1.75
COL6A1P12109 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC4.14□□□□□ -1.75
COL6A1P12109 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC4.14□□□□□ -1.75
COL6A1P12109 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC4.14□□□□□ -1.75
COL6A1P12109 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC4.14□□□□□ -1.75
COL6A1P12109 AC096751.1-201ENST00000515178 2202 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
COL6A1P12109 MAPK10-253ENST00000641010 4072 ntBASIC4.14□□□□□ -1.75
COL6A1P12109 SLC15A5-201ENST00000344941 2923 ntAPPRIS P1 TSL 5 BASIC4.14□□□□□ -1.75
COL6A1P12109 PIGN-229ENST00000638936 4233 ntAPPRIS P1 TSL 5 BASIC4.14□□□□□ -1.75
COL6A1P12109 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
COL6A1P12109 SNORA38.1-201ENST00000364172 131 ntBASIC4.14□□□□□ -1.75
COL6A1P12109 Y_RNA.476-201ENST00000384347 108 ntBASIC4.14□□□□□ -1.75
COL6A1P12109 Y_RNA.480-201ENST00000384364 102 ntBASIC4.14□□□□□ -1.75
COL6A1P12109 MIR493-201ENST00000385254 89 ntBASIC4.14□□□□□ -1.75
COL6A1P12109 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC4.14□□□□□ -1.75
COL6A1P12109 RNU6-817P-201ENST00000391083 104 ntBASIC4.14□□□□□ -1.75
COL6A1P12109 RNU1-101P-201ENST00000391171 127 ntBASIC4.14□□□□□ -1.75
COL6A1P12109 RNU6-847P-201ENST00000411115 108 ntBASIC4.14□□□□□ -1.75
COL6A1P12109 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC4.14□□□□□ -1.75
COL6A1P12109 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC4.14□□□□□ -1.75
COL6A1P12109 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC4.14□□□□□ -1.75
COL6A1P12109 RPL23AP50-201ENST00000434149 455 ntBASIC4.14□□□□□ -1.75
COL6A1P12109 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC4.14□□□□□ -1.75
COL6A1P12109 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC4.14□□□□□ -1.75
COL6A1P12109 SNORD5.1-201ENST00000458800 75 ntBASIC4.14□□□□□ -1.75
COL6A1P12109 HMGN2P13-201ENST00000476476 274 ntBASIC4.14□□□□□ -1.75
COL6A1P12109 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC4.14□□□□□ -1.75
COL6A1P12109 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC4.14□□□□□ -1.75
COL6A1P12109 Y_RNA.721-201ENST00000517207 102 ntBASIC4.14□□□□□ -1.75
COL6A1P12109 RNU6-840P-201ENST00000517275 65 ntBASIC4.14□□□□□ -1.75
COL6A1P12109 AP006287.2-201ENST00000529036 502 ntTSL 2 BASIC4.14□□□□□ -1.75
COL6A1P12109 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC4.14□□□□□ -1.75
COL6A1P12109 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC4.14□□□□□ -1.75
COL6A1P12109 AC025423.5-201ENST00000550230 219 ntBASIC4.14□□□□□ -1.75
COL6A1P12109 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC4.14□□□□□ -1.75
COL6A1P12109 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC4.14□□□□□ -1.75
COL6A1P12109 AC011373.1-201ENST00000607270 237 ntBASIC4.14□□□□□ -1.75
COL6A1P12109 SDR42E1P2-201ENST00000614861 481 ntBASIC4.14□□□□□ -1.75
COL6A1P12109 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC4.14□□□□□ -1.75
COL6A1P12109 HSPA8P4-201ENST00000511877 1920 ntBASIC4.14□□□□□ -1.75
COL6A1P12109 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
COL6A1P12109 CENPF-201ENST00000366955 10307 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
COL6A1P12109 KLRD1-204ENST00000381908 15549 ntAPPRIS P4 TSL 1 (best) BASIC4.14□□□□□ -1.75
COL6A1P12109 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC4.14□□□□□ -1.75
COL6A1P12109 BTAF1-204ENST00000544642 6938 ntAPPRIS ALT1 TSL 5 BASIC4.14□□□□□ -1.75
COL6A1P12109 AC005592.1-201ENST00000566527 1640 ntBASIC4.13□□□□□ -1.75
COL6A1P12109 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC4.13□□□□□ -1.75
COL6A1P12109 POSTN-203ENST00000379747 3373 ntAPPRIS P3 TSL 1 (best) BASIC4.13□□□□□ -1.75
COL6A1P12109 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC4.13□□□□□ -1.75
COL6A1P12109 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC4.13□□□□□ -1.75
COL6A1P12109 ASAH1-265ENST00000637922 2297 ntTSL 5 BASIC4.13□□□□□ -1.75
COL6A1P12109 Y_RNA.2-201ENST00000362330 96 ntBASIC4.13□□□□□ -1.75
COL6A1P12109 Y_RNA.473-201ENST00000384333 102 ntBASIC4.13□□□□□ -1.75
COL6A1P12109 RNU6-45P-201ENST00000384471 107 ntBASIC4.13□□□□□ -1.75
COL6A1P12109 Y_RNA.574-201ENST00000384766 95 ntBASIC4.13□□□□□ -1.75
COL6A1P12109 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC4.13□□□□□ -1.75
COL6A1P12109 U3.26-201ENST00000391236 204 ntBASIC4.13□□□□□ -1.75
COL6A1P12109 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC4.13□□□□□ -1.75
COL6A1P12109 AC092809.3-201ENST00000415453 231 ntBASIC4.13□□□□□ -1.75
COL6A1P12109 DPH3P2-201ENST00000422618 250 ntBASIC4.13□□□□□ -1.75
COL6A1P12109 AL160275.3-201ENST00000423876 471 ntBASIC4.13□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 80.6 ms