Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 RNU5B-2P-201ENST00000363036 113 ntBASIC4.75□□□□□ -1.65
USP3Q9Y6I4 Y_RNA.262-201ENST00000364641 102 ntBASIC4.75□□□□□ -1.65
USP3Q9Y6I4 RNU6-1175P-201ENST00000365200 107 ntBASIC4.75□□□□□ -1.65
USP3Q9Y6I4 SNORA29-201ENST00000384183 140 ntBASIC4.75□□□□□ -1.65
USP3Q9Y6I4 RNU6-281P-201ENST00000384212 103 ntBASIC4.75□□□□□ -1.65
USP3Q9Y6I4 MIR10B-201ENST00000385011 110 ntBASIC4.75□□□□□ -1.65
USP3Q9Y6I4 RNU2-51P-201ENST00000410708 197 ntBASIC4.75□□□□□ -1.65
USP3Q9Y6I4 RN7SKP51-201ENST00000410781 304 ntBASIC4.75□□□□□ -1.65
USP3Q9Y6I4 KCNJ6-AS1-201ENST00000435001 357 ntTSL 5 BASIC4.75□□□□□ -1.65
USP3Q9Y6I4 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC4.75□□□□□ -1.65
USP3Q9Y6I4 AC025741.1-201ENST00000506100 544 ntTSL 4 BASIC4.75□□□□□ -1.65
USP3Q9Y6I4 GYPA-208ENST00000512064 441 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
USP3Q9Y6I4 RNA5SP464-201ENST00000516251 108 ntBASIC4.75□□□□□ -1.65
USP3Q9Y6I4 SNORA70.16-201ENST00000516390 95 ntBASIC4.75□□□□□ -1.65
USP3Q9Y6I4 MTND5P41-201ENST00000517498 206 ntBASIC4.75□□□□□ -1.65
USP3Q9Y6I4 BPIFA4P-203ENST00000603168 689 ntBASIC4.75□□□□□ -1.65
USP3Q9Y6I4 AP005019.3-201ENST00000620418 560 ntBASIC4.75□□□□□ -1.65
USP3Q9Y6I4 AC006001.4-201ENST00000622243 395 ntBASIC4.75□□□□□ -1.65
USP3Q9Y6I4 MIR6715B-201ENST00000637172 77 ntBASIC4.75□□□□□ -1.65
USP3Q9Y6I4 CACNB4-273ENST00000638091 4061 ntTSL 5 BASIC4.75□□□□□ -1.65
USP3Q9Y6I4 AC126323.6-202ENST00000568092 3511 ntBASIC4.75□□□□□ -1.65
USP3Q9Y6I4 FAM197Y9-201ENST00000451062 2332 ntTSL 5 BASIC4.75□□□□□ -1.65
USP3Q9Y6I4 ZNF534-204ENST00000433050 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC4.75□□□□□ -1.65
USP3Q9Y6I4 ARHGAP21-218ENST00000636789 4210 ntTSL 2 BASIC4.75□□□□□ -1.65
USP3Q9Y6I4 PSMD1-213ENST00000619128 3161 ntAPPRIS ALT1 TSL 5 BASIC4.75□□□□□ -1.65
USP3Q9Y6I4 CHM-201ENST00000357749 5442 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
USP3Q9Y6I4 AC079062.1-203ENST00000581862 3610 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
USP3Q9Y6I4 EXOC1-202ENST00000349598 3248 ntAPPRIS ALT1 TSL 2 BASIC4.74□□□□□ -1.65
USP3Q9Y6I4 USP8-202ENST00000396444 19026 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
USP3Q9Y6I4 CCNYL2-202ENST00000637719 3311 ntTSL 2 BASIC4.74□□□□□ -1.65
USP3Q9Y6I4 ATP2C1-212ENST00000507488 3579 ntAPPRIS ALT2 TSL 2 BASIC4.74□□□□□ -1.65
USP3Q9Y6I4 USP44-201ENST00000258499 4022 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
USP3Q9Y6I4 SNORD115-8-201ENST00000363856 82 ntBASIC4.74□□□□□ -1.65
USP3Q9Y6I4 SNORD115-38-201ENST00000365037 82 ntBASIC4.74□□□□□ -1.65
USP3Q9Y6I4 Y_RNA.398-201ENST00000383952 99 ntBASIC4.74□□□□□ -1.65
USP3Q9Y6I4 RNU6-20P-201ENST00000384106 107 ntBASIC4.74□□□□□ -1.65
USP3Q9Y6I4 RNU6-1145P-201ENST00000384246 107 ntBASIC4.74□□□□□ -1.65
USP3Q9Y6I4 RNU6-159P-201ENST00000391080 106 ntBASIC4.74□□□□□ -1.65
USP3Q9Y6I4 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
USP3Q9Y6I4 RNU6-651P-201ENST00000411040 105 ntBASIC4.74□□□□□ -1.65
USP3Q9Y6I4 AL356387.2-201ENST00000422272 243 ntBASIC4.74□□□□□ -1.65
USP3Q9Y6I4 AL732292.1-201ENST00000426692 226 ntBASIC4.74□□□□□ -1.65
USP3Q9Y6I4 AC105940.1-201ENST00000434265 353 ntTSL 3 BASIC4.74□□□□□ -1.65
USP3Q9Y6I4 AC004837.2-201ENST00000435766 731 ntTSL 3 BASIC4.74□□□□□ -1.65
USP3Q9Y6I4 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC4.74□□□□□ -1.65
USP3Q9Y6I4 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
USP3Q9Y6I4 AC243964.1-201ENST00000441814 261 ntBASIC4.74□□□□□ -1.65
USP3Q9Y6I4 SSXP4-201ENST00000451349 245 ntBASIC4.74□□□□□ -1.65
USP3Q9Y6I4 CYCSP23-201ENST00000519781 313 ntBASIC4.74□□□□□ -1.65
USP3Q9Y6I4 AC090281.1-201ENST00000523019 276 ntBASIC4.74□□□□□ -1.65
USP3Q9Y6I4 CYCSP39-201ENST00000565821 309 ntBASIC4.74□□□□□ -1.65
USP3Q9Y6I4 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC4.74□□□□□ -1.65
USP3Q9Y6I4 MIR6891-201ENST00000618788 93 ntBASIC4.74□□□□□ -1.65
USP3Q9Y6I4 CUL2-209ENST00000537177 4271 ntTSL 5 BASIC4.74□□□□□ -1.65
USP3Q9Y6I4 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC4.74□□□□□ -1.65
USP3Q9Y6I4 CCNT1-205ENST00000618666 6915 ntTSL 2 BASIC4.74□□□□□ -1.65
USP3Q9Y6I4 AC139713.2-214ENST00000642059 1811 ntBASIC4.74□□□□□ -1.65
USP3Q9Y6I4 AC093591.2-201ENST00000565254 3843 ntBASIC4.74□□□□□ -1.65
USP3Q9Y6I4 ZNF594-201ENST00000399604 4862 ntAPPRIS P1 BASIC4.74□□□□□ -1.65
USP3Q9Y6I4 TAX1BP1-202ENST00000396319 2892 ntAPPRIS P3 TSL 1 (best) BASIC4.74□□□□□ -1.65
USP3Q9Y6I4 GPATCH2L-214ENST00000621494 12396 ntAPPRIS P1 TSL 2 BASIC4.74□□□□□ -1.65
USP3Q9Y6I4 CENPI-201ENST00000372926 2375 ntAPPRIS ALT2 TSL 5 BASIC4.73□□□□□ -1.65
USP3Q9Y6I4 ETV1-205ENST00000405192 4402 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
USP3Q9Y6I4 ABCA8-215ENST00000615593 3264 ntTSL 5 BASIC4.73□□□□□ -1.65
USP3Q9Y6I4 Z95331.1-201ENST00000623075 23112 ntBASIC4.73□□□□□ -1.65
USP3Q9Y6I4 EEF1A1-211ENST00000615060 3508 ntTSL 5 BASIC4.73□□□□□ -1.65
USP3Q9Y6I4 CEP295-201ENST00000325212 8057 ntAPPRIS P2 TSL 2 BASIC4.73□□□□□ -1.65
USP3Q9Y6I4 PTPN13-209ENST00000511467 8076 ntAPPRIS P4 TSL 2 BASIC4.73□□□□□ -1.65
USP3Q9Y6I4 RNA5SP447-201ENST00000363749 119 ntBASIC4.73□□□□□ -1.65
USP3Q9Y6I4 Y_RNA.418-201ENST00000384029 102 ntBASIC4.73□□□□□ -1.65
USP3Q9Y6I4 Y_RNA.446-201ENST00000384178 104 ntBASIC4.73□□□□□ -1.65
USP3Q9Y6I4 U8.10-201ENST00000384260 133 ntBASIC4.73□□□□□ -1.65
USP3Q9Y6I4 Y_RNA.580-201ENST00000391004 95 ntBASIC4.73□□□□□ -1.65
USP3Q9Y6I4 RPL23AP26-201ENST00000412728 464 ntBASIC4.73□□□□□ -1.65
USP3Q9Y6I4 UQCRBP2-201ENST00000447827 297 ntBASIC4.73□□□□□ -1.65
USP3Q9Y6I4 RNU6-479P-201ENST00000516348 105 ntBASIC4.73□□□□□ -1.65
USP3Q9Y6I4 RNU6-62P-201ENST00000516526 102 ntBASIC4.73□□□□□ -1.65
USP3Q9Y6I4 RAB9BP1-201ENST00000519581 626 ntBASIC4.73□□□□□ -1.65
USP3Q9Y6I4 AC064807.2-201ENST00000521188 672 ntTSL 3 BASIC4.73□□□□□ -1.65
USP3Q9Y6I4 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC4.73□□□□□ -1.65
USP3Q9Y6I4 AL133383.1-201ENST00000569292 901 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
USP3Q9Y6I4 MIR5692C2-201ENST00000577959 77 ntBASIC4.73□□□□□ -1.65
USP3Q9Y6I4 MIR5695-201ENST00000579717 85 ntBASIC4.73□□□□□ -1.65
USP3Q9Y6I4 AL356218.2-201ENST00000605264 187 ntBASIC4.73□□□□□ -1.65
USP3Q9Y6I4 AC140113.4-201ENST00000622087 222 ntBASIC4.73□□□□□ -1.65
USP3Q9Y6I4 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
USP3Q9Y6I4 OR10D3-202ENST00000641351 3561 ntAPPRIS P1 BASIC4.73□□□□□ -1.65
USP3Q9Y6I4 BAZ2B-203ENST00000392782 8058 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
USP3Q9Y6I4 XIRP2-203ENST00000409195 12675 ntTSL 5 BASIC4.73□□□□□ -1.65
USP3Q9Y6I4 DNAJC9-AS1-204ENST00000440197 2865 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
USP3Q9Y6I4 KIF21A-201ENST00000361418 5044 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
USP3Q9Y6I4 OR8H2-203ENST00000641311 3092 ntAPPRIS P2 BASIC4.73□□□□□ -1.65
USP3Q9Y6I4 DST-202ENST00000312431 17756 ntAPPRIS P2 TSL 5 BASIC4.73□□□□□ -1.65
USP3Q9Y6I4 TCF4-281ENST00000636822 7640 ntTSL 5 BASIC4.72□□□□□ -1.65
USP3Q9Y6I4 AC022336.2-201ENST00000568966 2538 ntBASIC4.72□□□□□ -1.65
USP3Q9Y6I4 ZBBX-202ENST00000392764 2849 ntAPPRIS ALT2 TSL 1 (best) BASIC4.72□□□□□ -1.65
USP3Q9Y6I4 LDHAL6CP-202ENST00000550738 3224 ntBASIC4.72□□□□□ -1.65
USP3Q9Y6I4 Y_RNA.331-201ENST00000365267 102 ntBASIC4.72□□□□□ -1.65
USP3Q9Y6I4 MIR329-1-201ENST00000385028 80 ntBASIC4.72□□□□□ -1.65
USP3Q9Y6I4 U3.22-201ENST00000391120 215 ntBASIC4.72□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 119.8 ms