Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 OR8R1P-201ENST00000543943 764 ntBASIC3.17□□□□□ -1.9
CCDC28AQ8IWP9 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC3.17□□□□□ -1.9
CCDC28AQ8IWP9 AC113139.1-201ENST00000605049 239 ntBASIC3.17□□□□□ -1.9
CCDC28AQ8IWP9 AL160281.1-201ENST00000605307 311 ntBASIC3.17□□□□□ -1.9
CCDC28AQ8IWP9 AC024940.4-201ENST00000605507 246 ntBASIC3.17□□□□□ -1.9
CCDC28AQ8IWP9 AC244517.12-201ENST00000623581 663 ntBASIC3.17□□□□□ -1.9
CCDC28AQ8IWP9 EFTUD1P2-201ENST00000514817 1603 ntBASIC3.17□□□□□ -1.9
CCDC28AQ8IWP9 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC3.17□□□□□ -1.9
CCDC28AQ8IWP9 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC3.17□□□□□ -1.9
CCDC28AQ8IWP9 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
CCDC28AQ8IWP9 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC3.17□□□□□ -1.9
CCDC28AQ8IWP9 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
CCDC28AQ8IWP9 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC3.16□□□□□ -1.9
CCDC28AQ8IWP9 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
CCDC28AQ8IWP9 AC110774.1-201ENST00000623567 2018 ntBASIC3.16□□□□□ -1.9
CCDC28AQ8IWP9 AC010889.1-201ENST00000566193 2666 ntBASIC3.16□□□□□ -1.9
CCDC28AQ8IWP9 RPL32P3-201ENST00000359025 275 ntBASIC3.16□□□□□ -1.9
CCDC28AQ8IWP9 RNU6-858P-201ENST00000362436 107 ntBASIC3.16□□□□□ -1.9
CCDC28AQ8IWP9 SNORD62.1-201ENST00000362541 86 ntBASIC3.16□□□□□ -1.9
CCDC28AQ8IWP9 Y_RNA.61-201ENST00000362835 102 ntBASIC3.16□□□□□ -1.9
CCDC28AQ8IWP9 TRBV24-1-201ENST00000390397 381 ntAPPRIS P1 BASIC3.16□□□□□ -1.9
CCDC28AQ8IWP9 RNA5SP354-201ENST00000391247 136 ntBASIC3.16□□□□□ -1.9
CCDC28AQ8IWP9 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
CCDC28AQ8IWP9 LINC02526-201ENST00000424162 419 ntTSL 2 BASIC3.16□□□□□ -1.9
CCDC28AQ8IWP9 AL157831.1-201ENST00000426134 473 ntBASIC3.16□□□□□ -1.9
CCDC28AQ8IWP9 RPL21P40-201ENST00000428586 483 ntBASIC3.16□□□□□ -1.9
CCDC28AQ8IWP9 C21orf91-OT1-202ENST00000430815 717 ntTSL 5 BASIC3.16□□□□□ -1.9
CCDC28AQ8IWP9 FABP5P14-201ENST00000437273 393 ntBASIC3.16□□□□□ -1.9
CCDC28AQ8IWP9 CXorf51A-201ENST00000458472 431 ntAPPRIS P1 TSL 2 BASIC3.16□□□□□ -1.9
CCDC28AQ8IWP9 snoU13.1-201ENST00000459157 104 ntBASIC3.16□□□□□ -1.9
CCDC28AQ8IWP9 MTND4P17-201ENST00000470444 350 ntBASIC3.16□□□□□ -1.9
CCDC28AQ8IWP9 AC006483.1-201ENST00000487308 313 ntBASIC3.16□□□□□ -1.9
CCDC28AQ8IWP9 RPL23AP49-201ENST00000492925 468 ntBASIC3.16□□□□□ -1.9
CCDC28AQ8IWP9 RN7SL810P-201ENST00000493031 276 ntBASIC3.16□□□□□ -1.9
CCDC28AQ8IWP9 AC092666.1-202ENST00000493400 442 ntTSL 2 BASIC3.16□□□□□ -1.9
CCDC28AQ8IWP9 RNU1-54P-201ENST00000517181 120 ntBASIC3.16□□□□□ -1.9
CCDC28AQ8IWP9 AC245166.1-201ENST00000521012 253 ntBASIC3.16□□□□□ -1.9
CCDC28AQ8IWP9 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC3.16□□□□□ -1.9
CCDC28AQ8IWP9 AC007619.1-201ENST00000544086 412 ntTSL 5 BASIC3.16□□□□□ -1.9
CCDC28AQ8IWP9 CR383656.8-201ENST00000549046 145 ntBASIC3.16□□□□□ -1.9
CCDC28AQ8IWP9 AC103996.1-201ENST00000555468 102 ntBASIC3.16□□□□□ -1.9
CCDC28AQ8IWP9 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC3.16□□□□□ -1.9
CCDC28AQ8IWP9 AC022523.3-201ENST00000559643 410 ntTSL 3 BASIC3.16□□□□□ -1.9
CCDC28AQ8IWP9 AL133383.1-201ENST00000569292 901 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
CCDC28AQ8IWP9 AC010653.1-201ENST00000571108 881 ntBASIC3.16□□□□□ -1.9
CCDC28AQ8IWP9 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC3.16□□□□□ -1.9
CCDC28AQ8IWP9 POLR3GP2-201ENST00000588366 668 ntBASIC3.16□□□□□ -1.9
CCDC28AQ8IWP9 KLKP1-201ENST00000595979 403 ntBASIC3.16□□□□□ -1.9
CCDC28AQ8IWP9 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC3.16□□□□□ -1.9
CCDC28AQ8IWP9 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC3.16□□□□□ -1.9
CCDC28AQ8IWP9 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
CCDC28AQ8IWP9 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC3.16□□□□□ -1.9
CCDC28AQ8IWP9 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
CCDC28AQ8IWP9 TRIQK-211ENST00000520430 1829 ntAPPRIS P1 TSL 2 BASIC3.16□□□□□ -1.9
CCDC28AQ8IWP9 FGD4-213ENST00000546442 3503 ntTSL 5 BASIC3.15□□□□□ -1.91
CCDC28AQ8IWP9 MIR331-201ENST00000362302 94 ntBASIC3.15□□□□□ -1.91
CCDC28AQ8IWP9 RNU6-593P-201ENST00000364716 112 ntBASIC3.15□□□□□ -1.91
CCDC28AQ8IWP9 Y_RNA.384-201ENST00000383909 102 ntBASIC3.15□□□□□ -1.91
CCDC28AQ8IWP9 SNORD116-20-201ENST00000384529 92 ntBASIC3.15□□□□□ -1.91
CCDC28AQ8IWP9 RNU6-19P-201ENST00000384718 107 ntBASIC3.15□□□□□ -1.91
CCDC28AQ8IWP9 MIR192-201ENST00000384915 110 ntBASIC3.15□□□□□ -1.91
CCDC28AQ8IWP9 MIR129-1-201ENST00000384972 72 ntBASIC3.15□□□□□ -1.91
CCDC28AQ8IWP9 AL031121.1-201ENST00000406553 254 ntBASIC3.15□□□□□ -1.91
CCDC28AQ8IWP9 RNA5SP36-201ENST00000410197 133 ntBASIC3.15□□□□□ -1.91
CCDC28AQ8IWP9 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC3.15□□□□□ -1.91
CCDC28AQ8IWP9 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC3.15□□□□□ -1.91
CCDC28AQ8IWP9 PTGES3P4-201ENST00000426243 356 ntBASIC3.15□□□□□ -1.91
CCDC28AQ8IWP9 RPL23AP46-201ENST00000438548 490 ntBASIC3.15□□□□□ -1.91
CCDC28AQ8IWP9 FO393408.1-201ENST00000458577 582 ntTSL 5 BASIC3.15□□□□□ -1.91
CCDC28AQ8IWP9 MED28P2-201ENST00000475771 317 ntBASIC3.15□□□□□ -1.91
CCDC28AQ8IWP9 AC068587.1-201ENST00000483613 781 ntBASIC3.15□□□□□ -1.91
CCDC28AQ8IWP9 RPS27P26-201ENST00000494583 239 ntBASIC3.15□□□□□ -1.91
CCDC28AQ8IWP9 Y_RNA.675-201ENST00000516389 149 ntBASIC3.15□□□□□ -1.91
CCDC28AQ8IWP9 RNU7-143P-201ENST00000516781 65 ntBASIC3.15□□□□□ -1.91
CCDC28AQ8IWP9 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC3.15□□□□□ -1.91
CCDC28AQ8IWP9 TMEM106C-220ENST00000552561 810 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
CCDC28AQ8IWP9 IMMP1LP2-201ENST00000552954 492 ntBASIC3.15□□□□□ -1.91
CCDC28AQ8IWP9 TRAV32-201ENST00000553993 340 ntBASIC3.15□□□□□ -1.91
CCDC28AQ8IWP9 AC005476.1-201ENST00000554427 397 ntBASIC3.15□□□□□ -1.91
CCDC28AQ8IWP9 AL355375.2-201ENST00000574825 175 ntBASIC3.15□□□□□ -1.91
CCDC28AQ8IWP9 AC009163.5-201ENST00000575421 637 ntBASIC3.15□□□□□ -1.91
CCDC28AQ8IWP9 AL355877.2-201ENST00000603670 358 ntBASIC3.15□□□□□ -1.91
CCDC28AQ8IWP9 AC009314.1-201ENST00000603871 304 ntBASIC3.15□□□□□ -1.91
CCDC28AQ8IWP9 AC091152.3-201ENST00000604227 325 ntBASIC3.15□□□□□ -1.91
CCDC28AQ8IWP9 AC113403.1-201ENST00000604910 193 ntBASIC3.15□□□□□ -1.91
CCDC28AQ8IWP9 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
CCDC28AQ8IWP9 AL662844.3-201ENST00000606909 517 ntTSL 5 BASIC3.15□□□□□ -1.91
CCDC28AQ8IWP9 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC3.15□□□□□ -1.91
CCDC28AQ8IWP9 SUCNR1-201ENST00000362032 4181 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
CCDC28AQ8IWP9 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC3.15□□□□□ -1.91
CCDC28AQ8IWP9 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
CCDC28AQ8IWP9 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
CCDC28AQ8IWP9 MT-ND4L-201ENST00000361335 297 ntAPPRIS P1 BASIC3.14□□□□□ -1.91
CCDC28AQ8IWP9 RNU6-428P-201ENST00000362942 107 ntBASIC3.14□□□□□ -1.91
CCDC28AQ8IWP9 RNU6-527P-201ENST00000363425 104 ntBASIC3.14□□□□□ -1.91
CCDC28AQ8IWP9 RNU6-105P-201ENST00000363909 104 ntBASIC3.14□□□□□ -1.91
CCDC28AQ8IWP9 RN7SKP227-201ENST00000364445 330 ntBASIC3.14□□□□□ -1.91
CCDC28AQ8IWP9 RNU6-336P-201ENST00000364891 107 ntBASIC3.14□□□□□ -1.91
CCDC28AQ8IWP9 CD24P4-201ENST00000382840 243 ntBASIC3.14□□□□□ -1.91
CCDC28AQ8IWP9 Y_RNA.387-201ENST00000383918 102 ntBASIC3.14□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 108.7 ms