Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 AC010900.2-201ENST00000604508 210 ntBASIC4.09□□□□□ -1.75
RNF4P78317 AC091979.2-201ENST00000607514 214 ntBASIC4.09□□□□□ -1.75
RNF4P78317 MIR378J-201ENST00000611988 109 ntBASIC4.09□□□□□ -1.75
RNF4P78317 uc_338.13-201ENST00000618243 179 ntBASIC4.09□□□□□ -1.75
RNF4P78317 BCLAF1-207ENST00000527759 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC4.09□□□□□ -1.75
RNF4P78317 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC4.09□□□□□ -1.76
RNF4P78317 ZNF510-201ENST00000223428 5154 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.76
RNF4P78317 PPP1R9A-205ENST00000424654 4058 ntTSL 5 BASIC4.09□□□□□ -1.76
RNF4P78317 PIGN-229ENST00000638936 4233 ntAPPRIS P1 TSL 5 BASIC4.09□□□□□ -1.76
RNF4P78317 LINC01239-202ENST00000436786 2347 ntTSL 2 BASIC4.09□□□□□ -1.76
RNF4P78317 AP1G1-207ENST00000564155 2723 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
RNF4P78317 TFPI-203ENST00000392365 3649 ntAPPRIS P1 TSL 5 BASIC4.08□□□□□ -1.76
RNF4P78317 AC126755.2-208ENST00000327792 462 ntBASIC4.08□□□□□ -1.76
RNF4P78317 AC138969.1-213ENST00000331436 462 ntBASIC4.08□□□□□ -1.76
RNF4P78317 MIR331-201ENST00000362302 94 ntBASIC4.08□□□□□ -1.76
RNF4P78317 RNA5SP307-201ENST00000362863 116 ntBASIC4.08□□□□□ -1.76
RNF4P78317 RN7SKP280-201ENST00000364196 304 ntBASIC4.08□□□□□ -1.76
RNF4P78317 RNU6-898P-201ENST00000365627 104 ntBASIC4.08□□□□□ -1.76
RNF4P78317 RNU4-70P-201ENST00000384579 139 ntBASIC4.08□□□□□ -1.76
RNF4P78317 U3.37-201ENST00000408528 213 ntBASIC4.08□□□□□ -1.76
RNF4P78317 AC004552.1-201ENST00000419089 348 ntBASIC4.08□□□□□ -1.76
RNF4P78317 LINC01768-201ENST00000453347 476 ntTSL 3 BASIC4.08□□□□□ -1.76
RNF4P78317 SNRPGP5-201ENST00000456003 220 ntBASIC4.08□□□□□ -1.76
RNF4P78317 RPS26P3-201ENST00000470205 348 ntBASIC4.08□□□□□ -1.76
RNF4P78317 AC090543.2-201ENST00000483963 348 ntBASIC4.08□□□□□ -1.76
RNF4P78317 AC004057.1-201ENST00000485827 348 ntBASIC4.08□□□□□ -1.76
RNF4P78317 RN7SL812P-201ENST00000493791 279 ntBASIC4.08□□□□□ -1.76
RNF4P78317 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC4.08□□□□□ -1.76
RNF4P78317 SNORA43.2-201ENST00000516652 128 ntBASIC4.08□□□□□ -1.76
RNF4P78317 Y_RNA.713-201ENST00000517013 96 ntBASIC4.08□□□□□ -1.76
RNF4P78317 IGKV2-23-201ENST00000518729 323 ntBASIC4.08□□□□□ -1.76
RNF4P78317 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC4.08□□□□□ -1.76
RNF4P78317 AC093023.1-201ENST00000547375 507 ntBASIC4.08□□□□□ -1.76
RNF4P78317 SYF2P1-201ENST00000550658 413 ntBASIC4.08□□□□□ -1.76
RNF4P78317 IGHV4OR15-8-201ENST00000557788 353 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
RNF4P78317 NUDT7-203ENST00000563839 316 ntTSL 3 BASIC4.08□□□□□ -1.76
RNF4P78317 AC113403.1-201ENST00000604910 193 ntBASIC4.08□□□□□ -1.76
RNF4P78317 MIR376A1-201ENST00000616574 68 ntBASIC4.08□□□□□ -1.76
RNF4P78317 AC135068.2-201ENST00000622410 353 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
RNF4P78317 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
RNF4P78317 PLCB1-233ENST00000637919 5074 ntTSL 5 BASIC4.08□□□□□ -1.76
RNF4P78317 AC241585.2-209ENST00000638217 143 ntBASIC4.08□□□□□ -1.76
RNF4P78317 ABI3BP-201ENST00000284322 4498 ntAPPRIS P2 TSL 1 (best) BASIC4.08□□□□□ -1.76
RNF4P78317 LINC02432-202ENST00000509161 2839 ntTSL 2 BASIC4.08□□□□□ -1.76
RNF4P78317 ARAP2-210ENST00000618163 2592 ntTSL 5 BASIC4.08□□□□□ -1.76
RNF4P78317 ARL15-202ENST00000504924 2486 ntAPPRIS P2 TSL 1 (best) BASIC4.07□□□□□ -1.76
RNF4P78317 ARL15-207ENST00000620747 2486 ntAPPRIS ALT1 TSL 5 BASIC4.07□□□□□ -1.76
RNF4P78317 OTOGL-202ENST00000458043 8083 ntAPPRIS P5 TSL 5 BASIC4.07□□□□□ -1.76
RNF4P78317 FAM169A-203ENST00000510496 5810 ntTSL 5 BASIC4.07□□□□□ -1.76
RNF4P78317 BMPR1B-203ENST00000440890 5388 ntTSL 2 BASIC4.07□□□□□ -1.76
RNF4P78317 AC233981.2-201ENST00000611524 1614 ntBASIC4.07□□□□□ -1.76
RNF4P78317 MAP3K19-203ENST00000375845 4369 ntAPPRIS P3 TSL 1 (best) BASIC4.07□□□□□ -1.76
RNF4P78317 CCNT2-201ENST00000264157 6917 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
RNF4P78317 RNU6-222P-201ENST00000362438 107 ntBASIC4.07□□□□□ -1.76
RNF4P78317 Y_RNA.237-201ENST00000364439 102 ntBASIC4.07□□□□□ -1.76
RNF4P78317 SNORD96B-201ENST00000386148 79 ntBASIC4.07□□□□□ -1.76
RNF4P78317 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC4.07□□□□□ -1.76
RNF4P78317 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
RNF4P78317 SNORA11F-201ENST00000408237 128 ntBASIC4.07□□□□□ -1.76
RNF4P78317 AP000275.1-201ENST00000411943 390 ntBASIC4.07□□□□□ -1.76
RNF4P78317 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC4.07□□□□□ -1.76
RNF4P78317 AL358453.1-201ENST00000422522 250 ntBASIC4.07□□□□□ -1.76
RNF4P78317 AC139712.2-201ENST00000424302 339 ntBASIC4.07□□□□□ -1.76
RNF4P78317 AC092047.1-201ENST00000424997 240 ntBASIC4.07□□□□□ -1.76
RNF4P78317 RPL21P40-201ENST00000428586 483 ntBASIC4.07□□□□□ -1.76
RNF4P78317 MTND5P15-201ENST00000434246 349 ntBASIC4.07□□□□□ -1.76
RNF4P78317 NDUFB4P6-201ENST00000436819 366 ntBASIC4.07□□□□□ -1.76
RNF4P78317 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
RNF4P78317 MTND2P29-201ENST00000438595 412 ntBASIC4.07□□□□□ -1.76
RNF4P78317 AL356535.1-201ENST00000440335 398 ntBASIC4.07□□□□□ -1.76
RNF4P78317 CYCSP32-201ENST00000440548 321 ntBASIC4.07□□□□□ -1.76
RNF4P78317 AL513124.1-201ENST00000450410 614 ntBASIC4.07□□□□□ -1.76
RNF4P78317 ANXA2P1-201ENST00000505539 926 ntBASIC4.07□□□□□ -1.76
RNF4P78317 RNU1-103P-201ENST00000516502 125 ntBASIC4.07□□□□□ -1.76
RNF4P78317 IGHVII-53-1-201ENST00000519538 255 ntBASIC4.07□□□□□ -1.76
RNF4P78317 CASP1P1-201ENST00000526345 212 ntBASIC4.07□□□□□ -1.76
RNF4P78317 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
RNF4P78317 LINC01479-202ENST00000546170 444 ntTSL 2 BASIC4.07□□□□□ -1.76
RNF4P78317 AC107016.1-201ENST00000550463 337 ntBASIC4.07□□□□□ -1.76
RNF4P78317 HSPE1P5-201ENST00000561489 272 ntBASIC4.07□□□□□ -1.76
RNF4P78317 AC136932.1-201ENST00000574771 208 ntBASIC4.07□□□□□ -1.76
RNF4P78317 LINC01533-202ENST00000588694 632 ntTSL 2 BASIC4.07□□□□□ -1.76
RNF4P78317 AL160290.3-201ENST00000604869 165 ntBASIC4.07□□□□□ -1.76
RNF4P78317 AC010201.1-201ENST00000605051 540 ntBASIC4.07□□□□□ -1.76
RNF4P78317 LINC00993-204ENST00000606476 500 ntTSL 5 BASIC4.07□□□□□ -1.76
RNF4P78317 AC005086.4-201ENST00000623065 213 ntBASIC4.07□□□□□ -1.76
RNF4P78317 AC007546.2-201ENST00000623996 360 ntBASIC4.07□□□□□ -1.76
RNF4P78317 ZNF660-201ENST00000322734 5834 ntAPPRIS P1 TSL 2 BASIC4.07□□□□□ -1.76
RNF4P78317 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC4.07□□□□□ -1.76
RNF4P78317 COPG2-201ENST00000330992 3073 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
RNF4P78317 MBNL1-211ENST00000463374 5092 ntAPPRIS P4 TSL 1 (best) BASIC4.07□□□□□ -1.76
RNF4P78317 UNC13C-201ENST00000260323 12946 ntAPPRIS P1 TSL 5 BASIC4.07□□□□□ -1.76
RNF4P78317 TES-202ENST00000393481 2763 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
RNF4P78317 ADGRL2-201ENST00000319517 5479 ntAPPRIS P2 TSL 1 (best) BASIC4.07□□□□□ -1.76
RNF4P78317 KCNJ1-202ENST00000324036 2614 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
RNF4P78317 CASK-207ENST00000421587 8204 ntAPPRIS ALT2 TSL 1 (best) BASIC4.06□□□□□ -1.76
RNF4P78317 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC4.06□□□□□ -1.76
RNF4P78317 snoU2_19.2-201ENST00000363024 80 ntBASIC4.06□□□□□ -1.76
RNF4P78317 Y_RNA.416-201ENST00000384014 113 ntBASIC4.06□□□□□ -1.76
RNF4P78317 Y_RNA.439-201ENST00000384119 94 ntBASIC4.06□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 141.7 ms