Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 VN1R36P-201ENST00000414936 291 ntBASIC2.25□□□□□ -2.05
COL4A4P53420 AC016710.1-201ENST00000421326 466 ntTSL 3 BASIC2.25□□□□□ -2.05
COL4A4P53420 LSM1P1-201ENST00000438629 273 ntBASIC2.25□□□□□ -2.05
COL4A4P53420 CALM1P1-201ENST00000442082 433 ntBASIC2.25□□□□□ -2.05
COL4A4P53420 BX248409.1-201ENST00000455497 255 ntBASIC2.25□□□□□ -2.05
COL4A4P53420 MTND1P3-201ENST00000484956 952 ntBASIC2.25□□□□□ -2.05
COL4A4P53420 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC2.25□□□□□ -2.05
COL4A4P53420 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC2.25□□□□□ -2.05
COL4A4P53420 AC105417.1-201ENST00000514691 285 ntBASIC2.25□□□□□ -2.05
COL4A4P53420 RNU6-430P-201ENST00000517078 107 ntBASIC2.25□□□□□ -2.05
COL4A4P53420 AP000889.2-201ENST00000532684 490 ntBASIC2.25□□□□□ -2.05
COL4A4P53420 AC136188.1-201ENST00000546770 342 ntTSL 3 BASIC2.25□□□□□ -2.05
COL4A4P53420 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC2.25□□□□□ -2.05
COL4A4P53420 AC107954.1-201ENST00000565906 727 ntBASIC2.25□□□□□ -2.05
COL4A4P53420 AL355375.2-201ENST00000574825 175 ntBASIC2.25□□□□□ -2.05
COL4A4P53420 AC245014.2-201ENST00000603689 287 ntBASIC2.25□□□□□ -2.05
COL4A4P53420 AC246785.4-201ENST00000605374 287 ntBASIC2.25□□□□□ -2.05
COL4A4P53420 AC104010.1-201ENST00000616889 150 ntBASIC2.25□□□□□ -2.05
COL4A4P53420 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC2.25□□□□□ -2.05
COL4A4P53420 AC244517.1-201ENST00000606030 2086 ntBASIC2.25□□□□□ -2.05
COL4A4P53420 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC2.24□□□□□ -2.05
COL4A4P53420 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC2.24□□□□□ -2.05
COL4A4P53420 XIAPP3-201ENST00000312918 795 ntBASIC2.24□□□□□ -2.05
COL4A4P53420 MT-ND3-201ENST00000361227 346 ntAPPRIS P1 BASIC2.24□□□□□ -2.05
COL4A4P53420 Y_RNA.128-201ENST00000363391 112 ntBASIC2.24□□□□□ -2.05
COL4A4P53420 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC2.24□□□□□ -2.05
COL4A4P53420 RNU6-510P-201ENST00000391239 108 ntBASIC2.24□□□□□ -2.05
COL4A4P53420 RPL23AP29-201ENST00000397284 453 ntBASIC2.24□□□□□ -2.05
COL4A4P53420 RPL23AP47-201ENST00000408017 460 ntBASIC2.24□□□□□ -2.05
COL4A4P53420 MIR1284-201ENST00000408337 120 ntBASIC2.24□□□□□ -2.05
COL4A4P53420 Y_RNA.608-201ENST00000410647 95 ntBASIC2.24□□□□□ -2.05
COL4A4P53420 OR9R1P-201ENST00000412200 877 ntBASIC2.24□□□□□ -2.05
COL4A4P53420 EI24P1-201ENST00000416584 867 ntBASIC2.24□□□□□ -2.05
COL4A4P53420 GTF2IP20-201ENST00000431663 360 ntBASIC2.24□□□□□ -2.05
COL4A4P53420 AL139230.1-201ENST00000440094 425 ntTSL 3 BASIC2.24□□□□□ -2.05
COL4A4P53420 RPL17P49-201ENST00000443728 411 ntBASIC2.24□□□□□ -2.05
COL4A4P53420 TTTY19-201ENST00000453955 269 ntTSL 1 (best) BASIC2.24□□□□□ -2.05
COL4A4P53420 AC097493.1-201ENST00000463958 372 ntBASIC2.24□□□□□ -2.05
COL4A4P53420 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC2.24□□□□□ -2.05
COL4A4P53420 AC006390.1-201ENST00000508068 283 ntBASIC2.24□□□□□ -2.05
COL4A4P53420 AC107398.2-201ENST00000508081 601 ntTSL 5 BASIC2.24□□□□□ -2.05
COL4A4P53420 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC2.24□□□□□ -2.05
COL4A4P53420 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC2.24□□□□□ -2.05
COL4A4P53420 SNORA19.2-201ENST00000516013 114 ntBASIC2.24□□□□□ -2.05
COL4A4P53420 RNA5SP135-201ENST00000517019 125 ntBASIC2.24□□□□□ -2.05
COL4A4P53420 AP001189.2-201ENST00000527320 189 ntBASIC2.24□□□□□ -2.05
COL4A4P53420 RERG-IT1-201ENST00000539734 301 ntTSL 3 BASIC2.24□□□□□ -2.05
COL4A4P53420 AL353708.2-201ENST00000567486 447 ntTSL 3 BASIC2.24□□□□□ -2.05
COL4A4P53420 AC020978.4-201ENST00000569088 460 ntTSL 3 BASIC2.24□□□□□ -2.05
COL4A4P53420 AC091043.1-201ENST00000579830 453 ntTSL 3 BASIC2.24□□□□□ -2.05
COL4A4P53420 AP001180.3-201ENST00000582221 145 ntBASIC2.24□□□□□ -2.05
COL4A4P53420 MIR544B-201ENST00000582372 78 ntBASIC2.24□□□□□ -2.05
COL4A4P53420 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC2.24□□□□□ -2.05
COL4A4P53420 LLPHP1-201ENST00000603571 367 ntBASIC2.24□□□□□ -2.05
COL4A4P53420 RNU6-87P-201ENST00000607561 108 ntBASIC2.24□□□□□ -2.05
COL4A4P53420 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC2.24□□□□□ -2.05
COL4A4P53420 SNORA50A-202ENST00000629536 136 ntBASIC2.24□□□□□ -2.05
COL4A4P53420 SOBP-204ENST00000618129 1550 ntTSL 1 (best) BASIC2.24□□□□□ -2.05
COL4A4P53420 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC2.24□□□□□ -2.05
COL4A4P53420 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC2.23□□□□□ -2.05
COL4A4P53420 MIR378A-201ENST00000362177 66 ntBASIC2.23□□□□□ -2.05
COL4A4P53420 RNU5D-1-201ENST00000363299 116 ntBASIC2.23□□□□□ -2.05
COL4A4P53420 RNU6-666P-201ENST00000363499 107 ntBASIC2.23□□□□□ -2.05
COL4A4P53420 RNU6-457P-201ENST00000363999 107 ntBASIC2.23□□□□□ -2.05
COL4A4P53420 RNU6-185P-201ENST00000384421 107 ntBASIC2.23□□□□□ -2.05
COL4A4P53420 RNY1P14-201ENST00000384426 108 ntBASIC2.23□□□□□ -2.05
COL4A4P53420 RNU6-146P-201ENST00000384602 108 ntBASIC2.23□□□□□ -2.05
COL4A4P53420 SNORD116-23-201ENST00000384645 92 ntBASIC2.23□□□□□ -2.05
COL4A4P53420 C1GALT1-202ENST00000402468 930 ntTSL 1 (best) BASIC2.23□□□□□ -2.05
COL4A4P53420 RNA5SP118-201ENST00000410385 109 ntBASIC2.23□□□□□ -2.05
COL4A4P53420 RNU6-373P-201ENST00000411247 98 ntBASIC2.23□□□□□ -2.05
COL4A4P53420 RNA5SP270-201ENST00000411361 118 ntBASIC2.23□□□□□ -2.05
COL4A4P53420 AC114763.2-201ENST00000412593 826 ntTSL 2 BASIC2.23□□□□□ -2.05
COL4A4P53420 IQCA1-AS1-201ENST00000413353 489 ntTSL 3 BASIC2.23□□□□□ -2.05
COL4A4P53420 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC2.23□□□□□ -2.05
COL4A4P53420 AL953862.1-201ENST00000423016 168 ntBASIC2.23□□□□□ -2.05
COL4A4P53420 AC026167.1-201ENST00000435651 299 ntTSL 3 BASIC2.23□□□□□ -2.05
COL4A4P53420 RPS7P5-201ENST00000441482 581 ntBASIC2.23□□□□□ -2.05
COL4A4P53420 LINC01005-202ENST00000451440 531 ntTSL 4 BASIC2.23□□□□□ -2.05
COL4A4P53420 MAST4-AS1-201ENST00000451496 777 ntTSL 2 BASIC2.23□□□□□ -2.05
COL4A4P53420 AP000926.1-201ENST00000479573 241 ntBASIC2.23□□□□□ -2.05
COL4A4P53420 AC104435.1-201ENST00000483483 166 ntBASIC2.23□□□□□ -2.05
COL4A4P53420 GZMAP1-201ENST00000503054 631 ntBASIC2.23□□□□□ -2.05
COL4A4P53420 AC092673.1-201ENST00000510203 428 ntTSL 3 BASIC2.23□□□□□ -2.05
COL4A4P53420 RNU6-583P-201ENST00000516012 92 ntBASIC2.23□□□□□ -2.05
COL4A4P53420 RNU6-1003P-201ENST00000517099 105 ntBASIC2.23□□□□□ -2.05
COL4A4P53420 AP003469.3-201ENST00000518090 473 ntTSL 3 BASIC2.23□□□□□ -2.05
COL4A4P53420 AC022690.1-201ENST00000526681 550 ntBASIC2.23□□□□□ -2.05
COL4A4P53420 AC068587.4-201ENST00000533893 186 ntBASIC2.23□□□□□ -2.05
COL4A4P53420 HIF1AP1-201ENST00000553642 175 ntBASIC2.23□□□□□ -2.05
COL4A4P53420 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC2.23□□□□□ -2.05
COL4A4P53420 AC018638.8-201ENST00000588755 281 ntBASIC2.23□□□□□ -2.05
COL4A4P53420 AC005498.1-201ENST00000592125 465 ntBASIC2.23□□□□□ -2.05
COL4A4P53420 ZEB2-AS1-204ENST00000595109 855 ntTSL 5 BASIC2.23□□□□□ -2.05
COL4A4P53420 AL391646.1-201ENST00000603860 190 ntBASIC2.23□□□□□ -2.05
COL4A4P53420 AL355802.3-201ENST00000607571 545 ntBASIC2.23□□□□□ -2.05
COL4A4P53420 AC006504.8-201ENST00000621046 635 ntBASIC2.23□□□□□ -2.05
COL4A4P53420 MIR6132-201ENST00000622083 109 ntBASIC2.23□□□□□ -2.05
COL4A4P53420 AC010976.1-210ENST00000630740 1005 ntTSL 5 BASIC2.23□□□□□ -2.05
COL4A4P53420 AC134503.1-201ENST00000633048 54 ntBASIC2.23□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 104.7 ms