Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC1.59□□□□□ -2.16
COL18A1P39060 DDX43P2-201ENST00000604753 1354 ntBASIC1.59□□□□□ -2.16
COL18A1P39060 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC1.58□□□□□ -2.16
COL18A1P39060 STARD6-201ENST00000307844 663 ntAPPRIS P1 TSL 1 (best) BASIC1.58□□□□□ -2.16
COL18A1P39060 RNU6-343P-201ENST00000364709 104 ntBASIC1.58□□□□□ -2.16
COL18A1P39060 AKAP14-203ENST00000371425 793 ntAPPRIS ALT2 TSL 5 BASIC1.58□□□□□ -2.16
COL18A1P39060 U3.40-201ENST00000408706 208 ntBASIC1.58□□□□□ -2.16
COL18A1P39060 UBE2FP1-201ENST00000416536 447 ntBASIC1.58□□□□□ -2.16
COL18A1P39060 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC1.58□□□□□ -2.16
COL18A1P39060 LINC01037-201ENST00000427337 424 ntTSL 5 BASIC1.58□□□□□ -2.16
COL18A1P39060 ELOCP14-201ENST00000428070 331 ntBASIC1.58□□□□□ -2.16
COL18A1P39060 IFNA20P-201ENST00000436840 528 ntBASIC1.58□□□□□ -2.16
COL18A1P39060 ELOCP7-201ENST00000439968 331 ntBASIC1.58□□□□□ -2.16
COL18A1P39060 AC104629.1-201ENST00000494226 508 ntBASIC1.58□□□□□ -2.16
COL18A1P39060 LINC02484-202ENST00000514877 546 ntTSL 3 BASIC1.58□□□□□ -2.16
COL18A1P39060 AC110296.1-201ENST00000515680 341 ntTSL 3 BASIC1.58□□□□□ -2.16
COL18A1P39060 RNU6-150P-201ENST00000516237 95 ntBASIC1.58□□□□□ -2.16
COL18A1P39060 RN7SKP265-201ENST00000516448 223 ntBASIC1.58□□□□□ -2.16
COL18A1P39060 SCARNA3-201ENST00000517097 143 ntBASIC1.58□□□□□ -2.16
COL18A1P39060 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC1.58□□□□□ -2.16
COL18A1P39060 AC118942.1-201ENST00000529674 1035 ntBASIC1.58□□□□□ -2.16
COL18A1P39060 CYCSP26-201ENST00000534107 320 ntBASIC1.58□□□□□ -2.16
COL18A1P39060 AL357094.1-201ENST00000603845 844 ntBASIC1.58□□□□□ -2.16
COL18A1P39060 AP000676.3-201ENST00000623299 569 ntBASIC1.58□□□□□ -2.16
COL18A1P39060 AC012640.5-201ENST00000623897 319 ntBASIC1.58□□□□□ -2.16
COL18A1P39060 AL359851.1-201ENST00000569460 4997 ntBASIC1.58□□□□□ -2.16
COL18A1P39060 VIM-AS1-201ENST00000437232 1351 ntTSL 2 BASIC1.58□□□□□ -2.16
COL18A1P39060 AC110491.1-201ENST00000562191 2010 ntBASIC1.58□□□□□ -2.16
COL18A1P39060 MIR373-201ENST00000362273 69 ntBASIC1.57□□□□□ -2.16
COL18A1P39060 RNU1-39P-201ENST00000383897 165 ntBASIC1.57□□□□□ -2.16
COL18A1P39060 SNORD116-12-201ENST00000384468 92 ntBASIC1.57□□□□□ -2.16
COL18A1P39060 MIR17-201ENST00000385012 84 ntBASIC1.57□□□□□ -2.16
COL18A1P39060 MIR625-201ENST00000385047 85 ntBASIC1.57□□□□□ -2.16
COL18A1P39060 RNU6-1328P-201ENST00000410938 106 ntBASIC1.57□□□□□ -2.16
COL18A1P39060 AL391704.1-203ENST00000414903 462 ntTSL 3 BASIC1.57□□□□□ -2.16
COL18A1P39060 VN1R108P-201ENST00000431580 830 ntBASIC1.57□□□□□ -2.16
COL18A1P39060 NANOGP2-201ENST00000435391 727 ntBASIC1.57□□□□□ -2.16
COL18A1P39060 AC098831.1-201ENST00000440661 216 ntBASIC1.57□□□□□ -2.16
COL18A1P39060 AC009299.3-202ENST00000445372 538 ntTSL 3 BASIC1.57□□□□□ -2.16
COL18A1P39060 AC104688.1-201ENST00000447158 419 ntTSL 3 BASIC1.57□□□□□ -2.16
COL18A1P39060 SNRPFP3-201ENST00000457792 225 ntBASIC1.57□□□□□ -2.16
COL18A1P39060 MEMO1P3-201ENST00000459811 302 ntBASIC1.57□□□□□ -2.16
COL18A1P39060 BZW1P2-201ENST00000473537 826 ntBASIC1.57□□□□□ -2.16
COL18A1P39060 AC023790.1-201ENST00000482174 347 ntBASIC1.57□□□□□ -2.16
COL18A1P39060 AC026801.1-201ENST00000497178 464 ntBASIC1.57□□□□□ -2.16
COL18A1P39060 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC1.57□□□□□ -2.16
COL18A1P39060 AC108449.1-202ENST00000517632 478 ntTSL 3 BASIC1.57□□□□□ -2.16
COL18A1P39060 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC1.57□□□□□ -2.16
COL18A1P39060 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC1.57□□□□□ -2.16
COL18A1P39060 AC079035.1-201ENST00000551713 848 ntTSL 1 (best) BASIC1.57□□□□□ -2.16
COL18A1P39060 AC005774.1-201ENST00000565247 567 ntTSL 4 BASIC1.57□□□□□ -2.16
COL18A1P39060 AC091043.1-201ENST00000579830 453 ntTSL 3 BASIC1.57□□□□□ -2.16
COL18A1P39060 AC004805.2-201ENST00000605382 482 ntBASIC1.57□□□□□ -2.16
COL18A1P39060 MIR6840-201ENST00000611937 71 ntBASIC1.57□□□□□ -2.16
COL18A1P39060 AP002791.1-201ENST00000623291 381 ntBASIC1.57□□□□□ -2.16
COL18A1P39060 AC079416.3-201ENST00000624479 549 ntBASIC1.57□□□□□ -2.16
COL18A1P39060 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC1.57□□□□□ -2.16
COL18A1P39060 OR5B3-201ENST00000309403 945 ntAPPRIS P1 BASIC1.57□□□□□ -2.16
COL18A1P39060 RNU6-1083P-201ENST00000384022 107 ntBASIC1.57□□□□□ -2.16
COL18A1P39060 SNORA40.4-201ENST00000390971 128 ntBASIC1.57□□□□□ -2.16
COL18A1P39060 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC1.57□□□□□ -2.16
COL18A1P39060 LANCL1-AS1-202ENST00000420418 476 ntTSL 3 BASIC1.57□□□□□ -2.16
COL18A1P39060 USP9YP26-201ENST00000421008 661 ntBASIC1.57□□□□□ -2.16
COL18A1P39060 AL953862.1-201ENST00000423016 168 ntBASIC1.57□□□□□ -2.16
COL18A1P39060 RPS3AP44-201ENST00000425466 790 ntBASIC1.57□□□□□ -2.16
COL18A1P39060 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC1.57□□□□□ -2.16
COL18A1P39060 PGBD4P3-201ENST00000440731 581 ntBASIC1.57□□□□□ -2.16
COL18A1P39060 AC013267.1-201ENST00000458227 267 ntBASIC1.57□□□□□ -2.16
COL18A1P39060 MTND1P16-201ENST00000465177 898 ntBASIC1.57□□□□□ -2.16
COL18A1P39060 GUCA1C-203ENST00000471108 633 ntTSL 2 BASIC1.57□□□□□ -2.16
COL18A1P39060 AC093895.1-203ENST00000506814 591 ntTSL 5 BASIC1.57□□□□□ -2.16
COL18A1P39060 AC079395.1-201ENST00000510981 262 ntBASIC1.57□□□□□ -2.16
COL18A1P39060 AC108517.1-201ENST00000512546 327 ntTSL 3 BASIC1.57□□□□□ -2.16
COL18A1P39060 AC096736.1-201ENST00000512609 947 ntTSL 3 BASIC1.57□□□□□ -2.16
COL18A1P39060 RNU6-390P-201ENST00000516259 103 ntBASIC1.57□□□□□ -2.16
COL18A1P39060 AC026991.1-201ENST00000520815 463 ntTSL 3 BASIC1.57□□□□□ -2.16
COL18A1P39060 AC107909.2-201ENST00000520844 493 ntTSL 3 BASIC1.57□□□□□ -2.16
COL18A1P39060 OR5AQ1P-201ENST00000527596 927 ntBASIC1.57□□□□□ -2.16
COL18A1P39060 VN1R83P-201ENST00000595685 445 ntBASIC1.57□□□□□ -2.16
COL18A1P39060 AL445584.2-201ENST00000614030 616 ntTSL 5 BASIC1.57□□□□□ -2.16
COL18A1P39060 MIR7157-201ENST00000635801 60 ntBASIC1.57□□□□□ -2.16
COL18A1P39060 AC013437.2-201ENST00000639587 677 ntBASIC1.57□□□□□ -2.16
COL18A1P39060 OR5B3-202ENST00000641865 1046 ntAPPRIS P1 BASIC1.57□□□□□ -2.16
COL18A1P39060 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC1.56□□□□□ -2.16
COL18A1P39060 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC1.56□□□□□ -2.16
COL18A1P39060 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.56□□□□□ -2.16
COL18A1P39060 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC1.56□□□□□ -2.16
COL18A1P39060 OR13C4-201ENST00000277216 957 ntAPPRIS P1 BASIC1.56□□□□□ -2.16
COL18A1P39060 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC1.56□□□□□ -2.16
COL18A1P39060 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC1.56□□□□□ -2.16
COL18A1P39060 RNU4-91P-201ENST00000364778 135 ntBASIC1.56□□□□□ -2.16
COL18A1P39060 RNU6-744P-201ENST00000365557 107 ntBASIC1.56□□□□□ -2.16
COL18A1P39060 RNU6-1316P-201ENST00000384242 108 ntBASIC1.56□□□□□ -2.16
COL18A1P39060 SNORD23.1-201ENST00000408212 104 ntBASIC1.56□□□□□ -2.16
COL18A1P39060 MRPL30-202ENST00000409145 562 ntTSL 2 BASIC1.56□□□□□ -2.16
COL18A1P39060 AC019070.1-201ENST00000415008 1024 ntBASIC1.56□□□□□ -2.16
COL18A1P39060 PCYT1B-AS1-201ENST00000432626 275 ntTSL 2 BASIC1.56□□□□□ -2.16
COL18A1P39060 ZNF385D-AS2-201ENST00000436306 424 ntTSL 5 BASIC1.56□□□□□ -2.16
COL18A1P39060 MTCO3P45-201ENST00000443036 613 ntBASIC1.56□□□□□ -2.16
COL18A1P39060 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC1.56□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 110.4 ms