Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC3.39□□□□□ -1.87
CIITAP33076 AC091885.1-201ENST00000506658 268 ntBASIC3.39□□□□□ -1.87
CIITAP33076 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC3.39□□□□□ -1.87
CIITAP33076 Y_RNA.689-201ENST00000516589 107 ntBASIC3.39□□□□□ -1.87
CIITAP33076 AC106038.1-203ENST00000522132 362 ntTSL 2 BASIC3.39□□□□□ -1.87
CIITAP33076 AL137161.1-201ENST00000532231 390 ntBASIC3.39□□□□□ -1.87
CIITAP33076 PSMA3P-201ENST00000555485 635 ntBASIC3.39□□□□□ -1.87
CIITAP33076 ZNF667-AS1-209ENST00000601875 495 ntTSL 3 BASIC3.39□□□□□ -1.87
CIITAP33076 AC093732.2-201ENST00000607950 274 ntBASIC3.39□□□□□ -1.87
CIITAP33076 ATP5A1P2-202ENST00000616464 443 ntBASIC3.39□□□□□ -1.87
CIITAP33076 AC007405.1-203ENST00000623667 932 ntTSL 5 BASIC3.39□□□□□ -1.87
CIITAP33076 AL359697.1-201ENST00000624879 587 ntBASIC3.39□□□□□ -1.87
CIITAP33076 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC3.39□□□□□ -1.87
CIITAP33076 MTND5P42-201ENST00000637720 498 ntBASIC3.39□□□□□ -1.87
CIITAP33076 SENP7-204ENST00000394085 1483 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
CIITAP33076 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
CIITAP33076 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC3.39□□□□□ -1.87
CIITAP33076 IL33-203ENST00000456383 2501 ntTSL 5 BASIC3.38□□□□□ -1.87
CIITAP33076 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC3.38□□□□□ -1.87
CIITAP33076 RNU6-1287P-201ENST00000362914 107 ntBASIC3.38□□□□□ -1.87
CIITAP33076 Y_RNA.509-201ENST00000384506 99 ntBASIC3.38□□□□□ -1.87
CIITAP33076 RNU6-1127P-201ENST00000384580 107 ntBASIC3.38□□□□□ -1.87
CIITAP33076 RNU6-1060P-201ENST00000384664 107 ntBASIC3.38□□□□□ -1.87
CIITAP33076 MIR514A1-201ENST00000385133 98 ntBASIC3.38□□□□□ -1.87
CIITAP33076 SNORD37.1-201ENST00000390968 65 ntBASIC3.38□□□□□ -1.87
CIITAP33076 RNU1-101P-201ENST00000391171 127 ntBASIC3.38□□□□□ -1.87
CIITAP33076 RNA5SP38-201ENST00000410750 119 ntBASIC3.38□□□□□ -1.87
CIITAP33076 OFD1P1Y-201ENST00000411756 1225 ntBASIC3.38□□□□□ -1.87
CIITAP33076 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC3.38□□□□□ -1.87
CIITAP33076 TAAR7P-201ENST00000436141 242 ntBASIC3.38□□□□□ -1.87
CIITAP33076 AL590639.1-201ENST00000456484 337 ntBASIC3.38□□□□□ -1.87
CIITAP33076 NDUFA6-201ENST00000470753 475 ntTSL 2 BASIC3.38□□□□□ -1.87
CIITAP33076 RPL31P60-201ENST00000478450 367 ntBASIC3.38□□□□□ -1.87
CIITAP33076 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC3.38□□□□□ -1.87
CIITAP33076 AC025524.1-201ENST00000518489 606 ntTSL 4 BASIC3.38□□□□□ -1.87
CIITAP33076 MAL2-206ENST00000522187 547 ntTSL 4 BASIC3.38□□□□□ -1.87
CIITAP33076 AC100768.1-201ENST00000525512 506 ntTSL 3 BASIC3.38□□□□□ -1.87
CIITAP33076 AC010185.1-201ENST00000542489 456 ntTSL 3 BASIC3.38□□□□□ -1.87
CIITAP33076 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC3.38□□□□□ -1.87
CIITAP33076 BNIP3P6-201ENST00000549284 499 ntBASIC3.38□□□□□ -1.87
CIITAP33076 RPS3AP23-202ENST00000574601 686 ntBASIC3.38□□□□□ -1.87
CIITAP33076 MIR3609-201ENST00000582661 80 ntBASIC3.38□□□□□ -1.87
CIITAP33076 AC016866.2-201ENST00000585251 502 ntTSL 2 BASIC3.38□□□□□ -1.87
CIITAP33076 AC174048.1-201ENST00000603389 144 ntBASIC3.38□□□□□ -1.87
CIITAP33076 AC104763.2-201ENST00000604179 382 ntBASIC3.38□□□□□ -1.87
CIITAP33076 AC244093.3-201ENST00000615419 411 ntTSL 3 BASIC3.38□□□□□ -1.87
CIITAP33076 uc_338.34-201ENST00000617467 174 ntBASIC3.38□□□□□ -1.87
CIITAP33076 AC027309.3-201ENST00000623419 351 ntBASIC3.38□□□□□ -1.87
CIITAP33076 AC112487.2-201ENST00000637950 304 ntBASIC3.38□□□□□ -1.87
CIITAP33076 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC3.38□□□□□ -1.87
CIITAP33076 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC3.38□□□□□ -1.87
CIITAP33076 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC3.38□□□□□ -1.87
CIITAP33076 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
CIITAP33076 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
CIITAP33076 AC000403.1-201ENST00000613696 3585 ntBASIC3.38□□□□□ -1.87
CIITAP33076 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC3.38□□□□□ -1.87
CIITAP33076 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
CIITAP33076 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC3.38□□□□□ -1.87
CIITAP33076 HSPA8P4-201ENST00000511877 1920 ntBASIC3.37□□□□□ -1.87
CIITAP33076 MTND5P27-201ENST00000428871 1720 ntBASIC3.37□□□□□ -1.87
CIITAP33076 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
CIITAP33076 Y_RNA.142-201ENST00000363491 102 ntBASIC3.37□□□□□ -1.87
CIITAP33076 Y_RNA.529-201ENST00000384586 119 ntBASIC3.37□□□□□ -1.87
CIITAP33076 CD3D-202ENST00000392884 476 ntTSL 2 BASIC3.37□□□□□ -1.87
CIITAP33076 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
CIITAP33076 AL356432.1-201ENST00000405809 419 ntBASIC3.37□□□□□ -1.87
CIITAP33076 RNA5SP274-201ENST00000410484 108 ntBASIC3.37□□□□□ -1.87
CIITAP33076 CALM2P2-201ENST00000428512 440 ntBASIC3.37□□□□□ -1.87
CIITAP33076 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC3.37□□□□□ -1.87
CIITAP33076 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC3.37□□□□□ -1.87
CIITAP33076 RNU7-66P-201ENST00000459469 62 ntBASIC3.37□□□□□ -1.87
CIITAP33076 RPL21P8-201ENST00000465083 535 ntBASIC3.37□□□□□ -1.87
CIITAP33076 MIR1302-2HG-201ENST00000469289 535 ntTSL 5 BASIC3.37□□□□□ -1.87
CIITAP33076 AL627309.4-201ENST00000496488 457 ntTSL 5 BASIC3.37□□□□□ -1.87
CIITAP33076 LINC02110-201ENST00000503870 546 ntTSL 3 BASIC3.37□□□□□ -1.87
CIITAP33076 AC009901.1-201ENST00000506703 541 ntBASIC3.37□□□□□ -1.87
CIITAP33076 FAM206BP-201ENST00000510179 541 ntBASIC3.37□□□□□ -1.87
CIITAP33076 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC3.37□□□□□ -1.87
CIITAP33076 RN7SKP272-201ENST00000516988 232 ntBASIC3.37□□□□□ -1.87
CIITAP33076 RNA5SP291-201ENST00000517222 105 ntBASIC3.37□□□□□ -1.87
CIITAP33076 BTF3P12-201ENST00000519620 469 ntBASIC3.37□□□□□ -1.87
CIITAP33076 RPL7P20-201ENST00000520308 745 ntBASIC3.37□□□□□ -1.87
CIITAP33076 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC3.37□□□□□ -1.87
CIITAP33076 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC3.37□□□□□ -1.87
CIITAP33076 MDM2-233ENST00000545204 398 ntTSL 5 BASIC3.37□□□□□ -1.87
CIITAP33076 SCOCP1-201ENST00000554676 349 ntBASIC3.37□□□□□ -1.87
CIITAP33076 AL355836.1-201ENST00000555951 870 ntBASIC3.37□□□□□ -1.87
CIITAP33076 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC3.37□□□□□ -1.87
CIITAP33076 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC3.37□□□□□ -1.87
CIITAP33076 BNIP3P25-201ENST00000596023 559 ntBASIC3.37□□□□□ -1.87
CIITAP33076 AL133393.1-201ENST00000603277 287 ntBASIC3.37□□□□□ -1.87
CIITAP33076 AC009233.1-201ENST00000616477 371 ntBASIC3.37□□□□□ -1.87
CIITAP33076 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC3.37□□□□□ -1.87
CIITAP33076 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC3.37□□□□□ -1.87
CIITAP33076 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC3.37□□□□□ -1.87
CIITAP33076 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC3.37□□□□□ -1.87
CIITAP33076 AC096644.4-201ENST00000563417 2912 ntBASIC3.37□□□□□ -1.87
CIITAP33076 OR4G2P-202ENST00000641004 1759 ntBASIC3.36□□□□□ -1.87
CIITAP33076 RNU6-288P-201ENST00000363690 104 ntBASIC3.36□□□□□ -1.87
CIITAP33076 RNU6-831P-201ENST00000384548 107 ntBASIC3.36□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 108.7 ms