Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 IL7-206ENST00000520269 456 ntTSL 3 BASIC3.16□□□□□ -1.9
HOXC11O43248 AC027807.1-201ENST00000559921 996 ntBASIC3.16□□□□□ -1.9
HOXC11O43248 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC3.16□□□□□ -1.9
HOXC11O43248 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC3.16□□□□□ -1.9
HOXC11O43248 AP005530.1-201ENST00000572608 567 ntTSL 3 BASIC3.16□□□□□ -1.9
HOXC11O43248 AC015908.4-201ENST00000582334 575 ntTSL 4 BASIC3.16□□□□□ -1.9
HOXC11O43248 AC005261.5-201ENST00000596280 355 ntBASIC3.16□□□□□ -1.9
HOXC11O43248 AC019159.1-201ENST00000605094 187 ntBASIC3.16□□□□□ -1.9
HOXC11O43248 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC3.16□□□□□ -1.9
HOXC11O43248 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC3.16□□□□□ -1.9
HOXC11O43248 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC3.16□□□□□ -1.9
HOXC11O43248 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
HOXC11O43248 AC093536.2-201ENST00000565257 1406 ntBASIC3.16□□□□□ -1.9
HOXC11O43248 AC093908.1-201ENST00000623125 8092 ntBASIC3.16□□□□□ -1.9
HOXC11O43248 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC3.16□□□□□ -1.9
HOXC11O43248 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC3.15□□□□□ -1.9
HOXC11O43248 AK9-203ENST00000368948 2478 ntTSL 5 BASIC3.15□□□□□ -1.9
HOXC11O43248 CDC27P3-201ENST00000635418 1910 ntBASIC3.15□□□□□ -1.9
HOXC11O43248 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.9
HOXC11O43248 MIR22-201ENST00000362190 85 ntBASIC3.15□□□□□ -1.91
HOXC11O43248 SNORD56.5-201ENST00000364281 72 ntBASIC3.15□□□□□ -1.91
HOXC11O43248 Y_RNA.255-201ENST00000364581 97 ntBASIC3.15□□□□□ -1.91
HOXC11O43248 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
HOXC11O43248 MIR147B-201ENST00000390185 80 ntBASIC3.15□□□□□ -1.91
HOXC11O43248 SNORD37.1-201ENST00000390968 65 ntBASIC3.15□□□□□ -1.91
HOXC11O43248 RN7SKP123-201ENST00000410732 291 ntBASIC3.15□□□□□ -1.91
HOXC11O43248 OFD1P1Y-201ENST00000411756 1225 ntBASIC3.15□□□□□ -1.91
HOXC11O43248 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC3.15□□□□□ -1.91
HOXC11O43248 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC3.15□□□□□ -1.91
HOXC11O43248 AL513477.1-202ENST00000417061 214 ntBASIC3.15□□□□□ -1.91
HOXC11O43248 RPL7P37-201ENST00000425095 738 ntBASIC3.15□□□□□ -1.91
HOXC11O43248 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC3.15□□□□□ -1.91
HOXC11O43248 RNU6-261P-201ENST00000459506 102 ntBASIC3.15□□□□□ -1.91
HOXC11O43248 AC116655.1-201ENST00000508324 901 ntBASIC3.15□□□□□ -1.91
HOXC11O43248 CSN1S2AP-204ENST00000512167 671 ntTSL 3 BASIC3.15□□□□□ -1.91
HOXC11O43248 AC074344.1-201ENST00000512823 224 ntBASIC3.15□□□□□ -1.91
HOXC11O43248 MIR892C-201ENST00000516410 77 ntBASIC3.15□□□□□ -1.91
HOXC11O43248 AC245166.1-201ENST00000521012 253 ntBASIC3.15□□□□□ -1.91
HOXC11O43248 AC104383.1-201ENST00000530297 370 ntBASIC3.15□□□□□ -1.91
HOXC11O43248 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC3.15□□□□□ -1.91
HOXC11O43248 HIF1AP1-201ENST00000553642 175 ntBASIC3.15□□□□□ -1.91
HOXC11O43248 AL512360.1-201ENST00000555346 234 ntBASIC3.15□□□□□ -1.91
HOXC11O43248 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC3.15□□□□□ -1.91
HOXC11O43248 EIF1P4-201ENST00000572664 335 ntBASIC3.15□□□□□ -1.91
HOXC11O43248 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
HOXC11O43248 AL033523.1-201ENST00000605153 153 ntBASIC3.15□□□□□ -1.91
HOXC11O43248 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC3.15□□□□□ -1.91
HOXC11O43248 AP001596.2-201ENST00000608410 312 ntBASIC3.15□□□□□ -1.91
HOXC11O43248 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC3.15□□□□□ -1.91
HOXC11O43248 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC3.15□□□□□ -1.91
HOXC11O43248 AC006020.1-201ENST00000420179 1854 ntBASIC3.15□□□□□ -1.91
HOXC11O43248 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
HOXC11O43248 TTN-204ENST00000360870 18218 ntTSL 5 BASIC3.14□□□□□ -1.91
HOXC11O43248 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC3.14□□□□□ -1.91
HOXC11O43248 AL139276.1-201ENST00000311910 1001 ntBASIC3.14□□□□□ -1.91
HOXC11O43248 SNORD14B-201ENST00000364533 90 ntBASIC3.14□□□□□ -1.91
HOXC11O43248 RNU6-7-201ENST00000364784 107 ntBASIC3.14□□□□□ -1.91
HOXC11O43248 RNU6-8-201ENST00000365467 107 ntBASIC3.14□□□□□ -1.91
HOXC11O43248 RNU6-434P-201ENST00000384376 107 ntBASIC3.14□□□□□ -1.91
HOXC11O43248 RNU6-393P-201ENST00000384475 107 ntBASIC3.14□□□□□ -1.91
HOXC11O43248 Y_RNA.510-201ENST00000384511 114 ntBASIC3.14□□□□□ -1.91
HOXC11O43248 SNORD67-201ENST00000390833 111 ntBASIC3.14□□□□□ -1.91
HOXC11O43248 CALM2P3-201ENST00000400429 449 ntBASIC3.14□□□□□ -1.91
HOXC11O43248 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC3.14□□□□□ -1.91
HOXC11O43248 PTGES3P4-201ENST00000426243 356 ntBASIC3.14□□□□□ -1.91
HOXC11O43248 AC016691.1-201ENST00000441321 413 ntBASIC3.14□□□□□ -1.91
HOXC11O43248 AL359771.1-201ENST00000441809 379 ntTSL 5 BASIC3.14□□□□□ -1.91
HOXC11O43248 UBBP3-201ENST00000445497 241 ntBASIC3.14□□□□□ -1.91
HOXC11O43248 AC073415.1-201ENST00000449240 153 ntBASIC3.14□□□□□ -1.91
HOXC11O43248 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC3.14□□□□□ -1.91
HOXC11O43248 HMGN1P18-201ENST00000457642 277 ntBASIC3.14□□□□□ -1.91
HOXC11O43248 AC083798.1-201ENST00000472671 131 ntBASIC3.14□□□□□ -1.91
HOXC11O43248 AC082651.2-201ENST00000496833 166 ntBASIC3.14□□□□□ -1.91
HOXC11O43248 LINC02100-201ENST00000512978 238 ntTSL 3 BASIC3.14□□□□□ -1.91
HOXC11O43248 SNORA40.12-201ENST00000516329 111 ntBASIC3.14□□□□□ -1.91
HOXC11O43248 SCARNA20.6-201ENST00000517251 106 ntBASIC3.14□□□□□ -1.91
HOXC11O43248 AP001205.1-201ENST00000521625 449 ntTSL 3 BASIC3.14□□□□□ -1.91
HOXC11O43248 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC3.14□□□□□ -1.91
HOXC11O43248 OR5AQ1P-201ENST00000527596 927 ntBASIC3.14□□□□□ -1.91
HOXC11O43248 AP005435.4-201ENST00000529514 284 ntBASIC3.14□□□□□ -1.91
HOXC11O43248 AL512310.1-201ENST00000548639 172 ntBASIC3.14□□□□□ -1.91
HOXC11O43248 BNIP3P6-201ENST00000549284 499 ntBASIC3.14□□□□□ -1.91
HOXC11O43248 AC009558.1-201ENST00000561174 581 ntTSL 4 BASIC3.14□□□□□ -1.91
HOXC11O43248 AL391813.1-201ENST00000603098 260 ntBASIC3.14□□□□□ -1.91
HOXC11O43248 AC007621.1-201ENST00000604544 437 ntBASIC3.14□□□□□ -1.91
HOXC11O43248 AC068792.1-201ENST00000621354 417 ntBASIC3.14□□□□□ -1.91
HOXC11O43248 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC3.14□□□□□ -1.91
HOXC11O43248 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC3.13□□□□□ -1.91
HOXC11O43248 AL021368.2-201ENST00000606125 5352 ntBASIC3.13□□□□□ -1.91
HOXC11O43248 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
HOXC11O43248 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC3.13□□□□□ -1.91
HOXC11O43248 DLEU2_6.3-201ENST00000340052 136 ntBASIC3.13□□□□□ -1.91
HOXC11O43248 Y_RNA.3-201ENST00000362331 103 ntBASIC3.13□□□□□ -1.91
HOXC11O43248 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC3.13□□□□□ -1.91
HOXC11O43248 SNORD70.1-201ENST00000391007 85 ntBASIC3.13□□□□□ -1.91
HOXC11O43248 AL606923.1-201ENST00000406616 190 ntBASIC3.13□□□□□ -1.91
HOXC11O43248 U3.37-201ENST00000408528 213 ntBASIC3.13□□□□□ -1.91
HOXC11O43248 RNU6ATAC40P-201ENST00000408580 137 ntBASIC3.13□□□□□ -1.91
HOXC11O43248 AL592148.1-201ENST00000413568 445 ntBASIC3.13□□□□□ -1.91
HOXC11O43248 AL353621.1-201ENST00000418219 243 ntBASIC3.13□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 92.9 ms