Protein–RNA interactions for Protein: Q9H4W6

EBF3, Transcription factor COE3, humanhuman

Predictions only

Length 596 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EBF3Q9H4W6 PAPPA-AS1-201ENST00000445861 2450 ntBASIC3.4□□□□□ -1.87
EBF3Q9H4W6 AL080313.2-201ENST00000456440 489 ntTSL 3 BASIC3.4□□□□□ -1.87
EBF3Q9H4W6 S100A11P2-201ENST00000467589 312 ntBASIC3.4□□□□□ -1.87
EBF3Q9H4W6 AC021205.2-201ENST00000480069 347 ntBASIC3.4□□□□□ -1.87
EBF3Q9H4W6 AC116562.3-201ENST00000506136 177 ntBASIC3.4□□□□□ -1.87
EBF3Q9H4W6 AC091885.1-201ENST00000506658 268 ntBASIC3.4□□□□□ -1.87
EBF3Q9H4W6 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC3.4□□□□□ -1.87
EBF3Q9H4W6 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC3.4□□□□□ -1.87
EBF3Q9H4W6 SNORA70.19-201ENST00000516717 90 ntBASIC3.4□□□□□ -1.87
EBF3Q9H4W6 Y_RNA.720-201ENST00000517166 92 ntBASIC3.4□□□□□ -1.87
EBF3Q9H4W6 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC3.4□□□□□ -1.87
EBF3Q9H4W6 HMGB1P41-201ENST00000520234 440 ntBASIC3.4□□□□□ -1.87
EBF3Q9H4W6 HMGN1P28-201ENST00000521340 364 ntBASIC3.4□□□□□ -1.87
EBF3Q9H4W6 DEFB108D-201ENST00000527787 222 ntBASIC3.4□□□□□ -1.87
EBF3Q9H4W6 AC068587.5-201ENST00000528506 175 ntBASIC3.4□□□□□ -1.87
EBF3Q9H4W6 AC090092.1-201ENST00000530576 510 ntTSL 2 BASIC3.4□□□□□ -1.87
EBF3Q9H4W6 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC3.4□□□□□ -1.87
EBF3Q9H4W6 SNRPGP18-201ENST00000553000 214 ntBASIC3.4□□□□□ -1.87
EBF3Q9H4W6 MIR4703-201ENST00000577728 79 ntBASIC3.4□□□□□ -1.87
EBF3Q9H4W6 AL451007.1-201ENST00000595491 289 ntBASIC3.4□□□□□ -1.87
EBF3Q9H4W6 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC3.4□□□□□ -1.87
EBF3Q9H4W6 AL022099.1-201ENST00000604551 712 ntBASIC3.4□□□□□ -1.87
EBF3Q9H4W6 IGHV3-29-201ENST00000604817 344 ntBASIC3.4□□□□□ -1.87
EBF3Q9H4W6 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC3.4□□□□□ -1.87
EBF3Q9H4W6 AC091925.1-201ENST00000623204 462 ntBASIC3.4□□□□□ -1.87
EBF3Q9H4W6 AL078596.1-201ENST00000624856 447 ntBASIC3.4□□□□□ -1.87
EBF3Q9H4W6 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
EBF3Q9H4W6 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
EBF3Q9H4W6 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC3.4□□□□□ -1.87
EBF3Q9H4W6 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC3.4□□□□□ -1.87
EBF3Q9H4W6 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
EBF3Q9H4W6 RAD21-210ENST00000523986 2506 ntTSL 2 BASIC3.39□□□□□ -1.87
EBF3Q9H4W6 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC3.39□□□□□ -1.87
EBF3Q9H4W6 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC3.39□□□□□ -1.87
EBF3Q9H4W6 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC3.39□□□□□ -1.87
EBF3Q9H4W6 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
EBF3Q9H4W6 Y_RNA.28-201ENST00000362554 111 ntBASIC3.39□□□□□ -1.87
EBF3Q9H4W6 SNORD56.3-201ENST00000363507 71 ntBASIC3.39□□□□□ -1.87
EBF3Q9H4W6 RNU6-1155P-201ENST00000363554 107 ntBASIC3.39□□□□□ -1.87
EBF3Q9H4W6 Y_RNA.187-201ENST00000363918 113 ntBASIC3.39□□□□□ -1.87
EBF3Q9H4W6 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
EBF3Q9H4W6 Y_RNA.530-201ENST00000384587 101 ntBASIC3.39□□□□□ -1.87
EBF3Q9H4W6 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC3.39□□□□□ -1.87
EBF3Q9H4W6 U3.26-201ENST00000391236 204 ntBASIC3.39□□□□□ -1.87
EBF3Q9H4W6 AL109755.1-201ENST00000401791 649 ntBASIC3.39□□□□□ -1.87
EBF3Q9H4W6 RNU4-78P-201ENST00000410940 126 ntBASIC3.39□□□□□ -1.87
EBF3Q9H4W6 OFD1P1Y-201ENST00000411756 1225 ntBASIC3.39□□□□□ -1.87
EBF3Q9H4W6 AL137014.1-201ENST00000420490 1226 ntBASIC3.39□□□□□ -1.87
EBF3Q9H4W6 AL109947.1-201ENST00000423747 382 ntTSL 2 BASIC3.39□□□□□ -1.87
EBF3Q9H4W6 MTCO3P10-201ENST00000455912 772 ntBASIC3.39□□□□□ -1.87
EBF3Q9H4W6 RNU7-182P-201ENST00000459009 62 ntBASIC3.39□□□□□ -1.87
EBF3Q9H4W6 RPL27AP5-201ENST00000469428 449 ntBASIC3.39□□□□□ -1.87
EBF3Q9H4W6 AP002884.2-201ENST00000471647 395 ntBASIC3.39□□□□□ -1.87
EBF3Q9H4W6 AC109925.1-201ENST00000478069 331 ntBASIC3.39□□□□□ -1.87
EBF3Q9H4W6 AL135752.1-201ENST00000479477 471 ntBASIC3.39□□□□□ -1.87
EBF3Q9H4W6 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
EBF3Q9H4W6 RNU2-58P-201ENST00000516403 183 ntBASIC3.39□□□□□ -1.87
EBF3Q9H4W6 RNU7-51P-201ENST00000516560 62 ntBASIC3.39□□□□□ -1.87
EBF3Q9H4W6 RNU6-64P-201ENST00000517119 105 ntBASIC3.39□□□□□ -1.87
EBF3Q9H4W6 AC100870.1-201ENST00000522035 505 ntBASIC3.39□□□□□ -1.87
EBF3Q9H4W6 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
EBF3Q9H4W6 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC3.39□□□□□ -1.87
EBF3Q9H4W6 AC010185.1-201ENST00000542489 456 ntTSL 3 BASIC3.39□□□□□ -1.87
EBF3Q9H4W6 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC3.39□□□□□ -1.87
EBF3Q9H4W6 AC024619.4-201ENST00000580924 316 ntBASIC3.39□□□□□ -1.87
EBF3Q9H4W6 MIR4293-201ENST00000584305 78 ntBASIC3.39□□□□□ -1.87
EBF3Q9H4W6 AC012594.1-269ENST00000600489 628 ntTSL 5 BASIC3.39□□□□□ -1.87
EBF3Q9H4W6 XIAPP1-201ENST00000603162 600 ntBASIC3.39□□□□□ -1.87
EBF3Q9H4W6 AC130324.3-201ENST00000614165 542 ntBASIC3.39□□□□□ -1.87
EBF3Q9H4W6 AC011155.2-201ENST00000623202 216 ntBASIC3.39□□□□□ -1.87
EBF3Q9H4W6 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
EBF3Q9H4W6 AF127577.6-201ENST00000623352 2191 ntBASIC3.39□□□□□ -1.87
EBF3Q9H4W6 DSG2-AS1-202ENST00000583706 2024 ntTSL 5 BASIC3.39□□□□□ -1.87
EBF3Q9H4W6 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC3.39□□□□□ -1.87
EBF3Q9H4W6 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC3.38□□□□□ -1.87
EBF3Q9H4W6 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
EBF3Q9H4W6 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC3.38□□□□□ -1.87
EBF3Q9H4W6 RNU6-1249P-201ENST00000363237 111 ntBASIC3.38□□□□□ -1.87
EBF3Q9H4W6 Y_RNA.148-201ENST00000363557 117 ntBASIC3.38□□□□□ -1.87
EBF3Q9H4W6 RNU6-196P-201ENST00000384315 107 ntBASIC3.38□□□□□ -1.87
EBF3Q9H4W6 RNU6-505P-201ENST00000384427 107 ntBASIC3.38□□□□□ -1.87
EBF3Q9H4W6 HSPE1P26-201ENST00000405341 275 ntBASIC3.38□□□□□ -1.87
EBF3Q9H4W6 RNU4-65P-201ENST00000410473 140 ntBASIC3.38□□□□□ -1.87
EBF3Q9H4W6 AC090952.1-201ENST00000424242 446 ntTSL 3 BASIC3.38□□□□□ -1.87
EBF3Q9H4W6 SKA2P1-201ENST00000425592 390 ntBASIC3.38□□□□□ -1.87
EBF3Q9H4W6 RPL36AP6-201ENST00000435770 321 ntBASIC3.38□□□□□ -1.87
EBF3Q9H4W6 DARS-AS1-205ENST00000444649 558 ntTSL 3 BASIC3.38□□□□□ -1.87
EBF3Q9H4W6 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC3.38□□□□□ -1.87
EBF3Q9H4W6 AC234775.1-201ENST00000454247 670 ntBASIC3.38□□□□□ -1.87
EBF3Q9H4W6 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC3.38□□□□□ -1.87
EBF3Q9H4W6 RPL23AP11-201ENST00000475260 469 ntBASIC3.38□□□□□ -1.87
EBF3Q9H4W6 TRBV1-201ENST00000476502 284 ntBASIC3.38□□□□□ -1.87
EBF3Q9H4W6 AC010273.2-201ENST00000479830 438 ntTSL 5 BASIC3.38□□□□□ -1.87
EBF3Q9H4W6 TRBVA-201ENST00000498804 316 ntBASIC3.38□□□□□ -1.87
EBF3Q9H4W6 AC005921.1-201ENST00000510589 286 ntBASIC3.38□□□□□ -1.87
EBF3Q9H4W6 SMURF2P1-201ENST00000514992 481 ntBASIC3.38□□□□□ -1.87
EBF3Q9H4W6 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC3.38□□□□□ -1.87
EBF3Q9H4W6 NRG1-IT1-203ENST00000523743 292 ntTSL 3 BASIC3.38□□□□□ -1.87
EBF3Q9H4W6 AP002768.1-201ENST00000526741 320 ntTSL 3 BASIC3.38□□□□□ -1.87
EBF3Q9H4W6 AP000889.2-201ENST00000532684 490 ntBASIC3.38□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 109.4 ms