Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
ZNF541Q9H0D2 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
ZNF541Q9H0D2 MTND5P6-201ENST00000422338 1798 ntBASIC3.01□□□□□ -1.93
ZNF541Q9H0D2 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
ZNF541Q9H0D2 AC092447.7-201ENST00000422212 1621 ntBASIC3□□□□□ -1.93
ZNF541Q9H0D2 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC3□□□□□ -1.93
ZNF541Q9H0D2 LRRC69-201ENST00000343709 720 ntTSL 2 BASIC3□□□□□ -1.93
ZNF541Q9H0D2 RNU6-179P-201ENST00000363350 107 ntBASIC3□□□□□ -1.93
ZNF541Q9H0D2 RNU6-1097P-201ENST00000363586 107 ntBASIC3□□□□□ -1.93
ZNF541Q9H0D2 AC008440.2-201ENST00000413496 423 ntTSL 5 BASIC3□□□□□ -1.93
ZNF541Q9H0D2 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC3□□□□□ -1.93
ZNF541Q9H0D2 MTND3P17-201ENST00000416968 344 ntBASIC3□□□□□ -1.93
ZNF541Q9H0D2 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC3□□□□□ -1.93
ZNF541Q9H0D2 MORF4L1P6-201ENST00000418771 268 ntBASIC3□□□□□ -1.93
ZNF541Q9H0D2 ELOCP14-201ENST00000428070 331 ntBASIC3□□□□□ -1.93
ZNF541Q9H0D2 SNRPEP9-201ENST00000436794 238 ntBASIC3□□□□□ -1.93
ZNF541Q9H0D2 ELOCP7-201ENST00000439968 331 ntBASIC3□□□□□ -1.93
ZNF541Q9H0D2 MTUS2-AS2-203ENST00000452602 651 ntTSL 3 BASIC3□□□□□ -1.93
ZNF541Q9H0D2 AC022364.2-201ENST00000457963 554 ntBASIC3□□□□□ -1.93
ZNF541Q9H0D2 AC233702.1-201ENST00000482905 502 ntBASIC3□□□□□ -1.93
ZNF541Q9H0D2 AC079382.1-201ENST00000493346 557 ntBASIC3□□□□□ -1.93
ZNF541Q9H0D2 AC116562.3-201ENST00000506136 177 ntBASIC3□□□□□ -1.93
ZNF541Q9H0D2 AC079349.1-201ENST00000509096 589 ntTSL 2 BASIC3□□□□□ -1.93
ZNF541Q9H0D2 AC108078.2-201ENST00000510750 236 ntBASIC3□□□□□ -1.93
ZNF541Q9H0D2 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
ZNF541Q9H0D2 AC068587.5-201ENST00000528506 175 ntBASIC3□□□□□ -1.93
ZNF541Q9H0D2 AC009135.1-201ENST00000549303 776 ntTSL 2 BASIC3□□□□□ -1.93
ZNF541Q9H0D2 AC090049.1-201ENST00000551075 1011 ntTSL 3 BASIC3□□□□□ -1.93
ZNF541Q9H0D2 AC245505.1-201ENST00000556398 224 ntBASIC3□□□□□ -1.93
ZNF541Q9H0D2 SUB1P2-201ENST00000556401 297 ntBASIC3□□□□□ -1.93
ZNF541Q9H0D2 AC103810.6-201ENST00000606708 136 ntBASIC3□□□□□ -1.93
ZNF541Q9H0D2 AC064807.4-201ENST00000607201 407 ntBASIC3□□□□□ -1.93
ZNF541Q9H0D2 AC008536.2-201ENST00000607284 349 ntBASIC3□□□□□ -1.93
ZNF541Q9H0D2 AC022893.3-201ENST00000607665 437 ntBASIC3□□□□□ -1.93
ZNF541Q9H0D2 AC007684.1-201ENST00000609671 477 ntBASIC3□□□□□ -1.93
ZNF541Q9H0D2 FTX_3.1-201ENST00000610451 147 ntBASIC3□□□□□ -1.93
ZNF541Q9H0D2 AC004852.3-201ENST00000614131 326 ntBASIC3□□□□□ -1.93
ZNF541Q9H0D2 AC138649.3-201ENST00000622154 254 ntBASIC3□□□□□ -1.93
ZNF541Q9H0D2 SEPT14P19-202ENST00000632397 370 ntTSL 3 BASIC3□□□□□ -1.93
ZNF541Q9H0D2 MTND5P42-201ENST00000637720 498 ntBASIC3□□□□□ -1.93
ZNF541Q9H0D2 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC3□□□□□ -1.93
ZNF541Q9H0D2 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
ZNF541Q9H0D2 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC3□□□□□ -1.93
ZNF541Q9H0D2 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
ZNF541Q9H0D2 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC3□□□□□ -1.93
ZNF541Q9H0D2 AC022336.2-201ENST00000568966 2538 ntBASIC3□□□□□ -1.93
ZNF541Q9H0D2 FAM35CP-201ENST00000554755 2470 ntBASIC2.99□□□□□ -1.93
ZNF541Q9H0D2 RNU6-884P-201ENST00000363889 107 ntBASIC2.99□□□□□ -1.93
ZNF541Q9H0D2 RNU6-282P-201ENST00000365357 103 ntBASIC2.99□□□□□ -1.93
ZNF541Q9H0D2 DYNLT3P1-201ENST00000378574 347 ntBASIC2.99□□□□□ -1.93
ZNF541Q9H0D2 RNU6-217P-201ENST00000384164 104 ntBASIC2.99□□□□□ -1.93
ZNF541Q9H0D2 Y_RNA.517-201ENST00000384551 106 ntBASIC2.99□□□□□ -1.93
ZNF541Q9H0D2 RNU6-14P-201ENST00000384630 106 ntBASIC2.99□□□□□ -1.93
ZNF541Q9H0D2 GSTA9P-201ENST00000406231 611 ntBASIC2.99□□□□□ -1.93
ZNF541Q9H0D2 SDCBPP3-201ENST00000419629 891 ntBASIC2.99□□□□□ -1.93
ZNF541Q9H0D2 AL592045.1-201ENST00000429867 352 ntBASIC2.99□□□□□ -1.93
ZNF541Q9H0D2 USP9YP14-201ENST00000430663 563 ntBASIC2.99□□□□□ -1.93
ZNF541Q9H0D2 AC112518.1-201ENST00000436089 575 ntTSL 4 BASIC2.99□□□□□ -1.93
ZNF541Q9H0D2 AL137789.1-201ENST00000439443 682 ntTSL 3 BASIC2.99□□□□□ -1.93
ZNF541Q9H0D2 LINC01069-201ENST00000452933 546 ntTSL 5 BASIC2.99□□□□□ -1.93
ZNF541Q9H0D2 AC006512.1-201ENST00000468816 291 ntBASIC2.99□□□□□ -1.93
ZNF541Q9H0D2 RPL23AP45-201ENST00000476406 468 ntBASIC2.99□□□□□ -1.93
ZNF541Q9H0D2 SUB1-206ENST00000506237 908 ntAPPRIS P1 TSL 2 BASIC2.99□□□□□ -1.93
ZNF541Q9H0D2 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC2.99□□□□□ -1.93
ZNF541Q9H0D2 SNORA31.3-201ENST00000516029 96 ntBASIC2.99□□□□□ -1.93
ZNF541Q9H0D2 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC2.99□□□□□ -1.93
ZNF541Q9H0D2 AC068135.2-201ENST00000569293 1028 ntBASIC2.99□□□□□ -1.93
ZNF541Q9H0D2 MTCO3P24-201ENST00000572729 782 ntBASIC2.99□□□□□ -1.93
ZNF541Q9H0D2 MIR4506-201ENST00000584693 77 ntBASIC2.99□□□□□ -1.93
ZNF541Q9H0D2 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC2.99□□□□□ -1.93
ZNF541Q9H0D2 MTND4LP5-201ENST00000605152 292 ntBASIC2.99□□□□□ -1.93
ZNF541Q9H0D2 AL359547.2-201ENST00000615810 418 ntBASIC2.99□□□□□ -1.93
ZNF541Q9H0D2 AL353997.5-201ENST00000618886 171 ntBASIC2.99□□□□□ -1.93
ZNF541Q9H0D2 AC215522.3-201ENST00000635602 354 ntTSL 5 BASIC2.99□□□□□ -1.93
ZNF541Q9H0D2 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC2.99□□□□□ -1.93
ZNF541Q9H0D2 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
ZNF541Q9H0D2 AC091564.4-201ENST00000533934 2194 ntBASIC2.98□□□□□ -1.93
ZNF541Q9H0D2 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC2.98□□□□□ -1.93
ZNF541Q9H0D2 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC2.98□□□□□ -1.93
ZNF541Q9H0D2 SNORA14A-201ENST00000364773 135 ntBASIC2.98□□□□□ -1.93
ZNF541Q9H0D2 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC2.98□□□□□ -1.93
ZNF541Q9H0D2 MIR301A-201ENST00000385261 86 ntBASIC2.98□□□□□ -1.93
ZNF541Q9H0D2 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC2.98□□□□□ -1.93
ZNF541Q9H0D2 Y_RNA.582-201ENST00000391023 95 ntBASIC2.98□□□□□ -1.93
ZNF541Q9H0D2 RNA5SP354-201ENST00000391247 136 ntBASIC2.98□□□□□ -1.93
ZNF541Q9H0D2 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC2.98□□□□□ -1.93
ZNF541Q9H0D2 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC2.98□□□□□ -1.93
ZNF541Q9H0D2 LINC01724-201ENST00000430519 621 ntTSL 3 BASIC2.98□□□□□ -1.93
ZNF541Q9H0D2 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC2.98□□□□□ -1.93
ZNF541Q9H0D2 RPS12P2-201ENST00000439728 269 ntBASIC2.98□□□□□ -1.93
ZNF541Q9H0D2 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
ZNF541Q9H0D2 AC079448.1-201ENST00000449377 373 ntBASIC2.98□□□□□ -1.93
ZNF541Q9H0D2 RPL9P6-201ENST00000492764 598 ntBASIC2.98□□□□□ -1.93
ZNF541Q9H0D2 CKS1BP2-201ENST00000497342 240 ntBASIC2.98□□□□□ -1.93
ZNF541Q9H0D2 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC2.98□□□□□ -1.93
ZNF541Q9H0D2 SNORA9.3-201ENST00000516383 129 ntBASIC2.98□□□□□ -1.93
ZNF541Q9H0D2 AC090572.1-201ENST00000519251 160 ntBASIC2.98□□□□□ -1.93
ZNF541Q9H0D2 UTP23-205ENST00000520733 369 ntTSL 3 BASIC2.98□□□□□ -1.93
ZNF541Q9H0D2 OR5AL2P-201ENST00000532185 920 ntBASIC2.98□□□□□ -1.93
ZNF541Q9H0D2 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC2.98□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 107.8 ms