Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 snoU13.28-201ENST00000459235 104 ntBASIC2.72□□□□□ -1.97
CCDC3Q9BQI4 AC117522.3-201ENST00000507974 584 ntBASIC2.72□□□□□ -1.97
CCDC3Q9BQI4 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC2.72□□□□□ -1.97
CCDC3Q9BQI4 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC2.72□□□□□ -1.97
CCDC3Q9BQI4 RANP3-201ENST00000530970 276 ntBASIC2.72□□□□□ -1.97
CCDC3Q9BQI4 HPRT1P3-201ENST00000539521 576 ntBASIC2.72□□□□□ -1.97
CCDC3Q9BQI4 AL512310.1-201ENST00000548639 172 ntBASIC2.72□□□□□ -1.97
CCDC3Q9BQI4 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC2.72□□□□□ -1.97
CCDC3Q9BQI4 AC012507.3-201ENST00000603556 477 ntBASIC2.72□□□□□ -1.97
CCDC3Q9BQI4 Z84480.1-201ENST00000605131 311 ntBASIC2.72□□□□□ -1.97
CCDC3Q9BQI4 HOTTIP_4.1-201ENST00000618195 165 ntBASIC2.72□□□□□ -1.97
CCDC3Q9BQI4 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC2.72□□□□□ -1.97
CCDC3Q9BQI4 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC2.72□□□□□ -1.97
CCDC3Q9BQI4 AL157786.1-207ENST00000627771 695 ntBASIC2.72□□□□□ -1.97
CCDC3Q9BQI4 AC084035.1-201ENST00000634543 607 ntBASIC2.72□□□□□ -1.97
CCDC3Q9BQI4 ATM-228ENST00000639240 498 ntTSL 5 BASIC2.72□□□□□ -1.97
CCDC3Q9BQI4 ATM-230ENST00000640388 578 ntTSL 5 BASIC2.72□□□□□ -1.97
CCDC3Q9BQI4 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC2.72□□□□□ -1.97
CCDC3Q9BQI4 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC2.72□□□□□ -1.97
CCDC3Q9BQI4 ELF2P3-201ENST00000445099 1506 ntBASIC2.72□□□□□ -1.97
CCDC3Q9BQI4 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
CCDC3Q9BQI4 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
CCDC3Q9BQI4 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC2.71□□□□□ -1.97
CCDC3Q9BQI4 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC2.71□□□□□ -1.98
CCDC3Q9BQI4 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.98
CCDC3Q9BQI4 RNU6-859P-201ENST00000362728 107 ntBASIC2.71□□□□□ -1.98
CCDC3Q9BQI4 SNORA4.3-201ENST00000365564 137 ntBASIC2.71□□□□□ -1.98
CCDC3Q9BQI4 RNU1-73P-201ENST00000383971 164 ntBASIC2.71□□□□□ -1.98
CCDC3Q9BQI4 Y_RNA.576-201ENST00000384781 102 ntBASIC2.71□□□□□ -1.98
CCDC3Q9BQI4 MIR181A1-201ENST00000385026 110 ntBASIC2.71□□□□□ -1.98
CCDC3Q9BQI4 MIR34A-201ENST00000385130 110 ntBASIC2.71□□□□□ -1.98
CCDC3Q9BQI4 AL138827.1-201ENST00000402666 306 ntBASIC2.71□□□□□ -1.98
CCDC3Q9BQI4 RNU6ATAC40P-201ENST00000408580 137 ntBASIC2.71□□□□□ -1.98
CCDC3Q9BQI4 AL158840.1-201ENST00000414132 523 ntTSL 3 BASIC2.71□□□□□ -1.98
CCDC3Q9BQI4 AC062039.1-201ENST00000414394 565 ntTSL 2 BASIC2.71□□□□□ -1.98
CCDC3Q9BQI4 BMS1P22-201ENST00000414726 313 ntBASIC2.71□□□□□ -1.98
CCDC3Q9BQI4 AC092809.3-201ENST00000415453 231 ntBASIC2.71□□□□□ -1.98
CCDC3Q9BQI4 AL031779.1-201ENST00000415663 330 ntBASIC2.71□□□□□ -1.98
CCDC3Q9BQI4 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC2.71□□□□□ -1.98
CCDC3Q9BQI4 AL160275.3-201ENST00000423876 471 ntBASIC2.71□□□□□ -1.98
CCDC3Q9BQI4 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC2.71□□□□□ -1.98
CCDC3Q9BQI4 RPL36AP53-201ENST00000432891 316 ntBASIC2.71□□□□□ -1.98
CCDC3Q9BQI4 AL596276.1-201ENST00000434465 418 ntBASIC2.71□□□□□ -1.98
CCDC3Q9BQI4 AC098831.1-201ENST00000440661 216 ntBASIC2.71□□□□□ -1.98
CCDC3Q9BQI4 AC018693.1-201ENST00000442829 550 ntTSL 4 BASIC2.71□□□□□ -1.98
CCDC3Q9BQI4 RPL32P28-201ENST00000443577 397 ntBASIC2.71□□□□□ -1.98
CCDC3Q9BQI4 LINC00395-202ENST00000451570 415 ntTSL 3 BASIC2.71□□□□□ -1.98
CCDC3Q9BQI4 SUMO2P6-201ENST00000505273 288 ntBASIC2.71□□□□□ -1.98
CCDC3Q9BQI4 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC2.71□□□□□ -1.98
CCDC3Q9BQI4 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC2.71□□□□□ -1.98
CCDC3Q9BQI4 AC114786.4-201ENST00000508771 728 ntBASIC2.71□□□□□ -1.98
CCDC3Q9BQI4 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC2.71□□□□□ -1.98
CCDC3Q9BQI4 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC2.71□□□□□ -1.98
CCDC3Q9BQI4 AC108727.1-201ENST00000513802 393 ntTSL 2 BASIC2.71□□□□□ -1.98
CCDC3Q9BQI4 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC2.71□□□□□ -1.98
CCDC3Q9BQI4 AP003469.3-201ENST00000518090 473 ntTSL 3 BASIC2.71□□□□□ -1.98
CCDC3Q9BQI4 C14orf105-204ENST00000526336 598 ntTSL 4 BASIC2.71□□□□□ -1.98
CCDC3Q9BQI4 AC007536.1-201ENST00000533382 349 ntBASIC2.71□□□□□ -1.98
CCDC3Q9BQI4 AC022880.1-201ENST00000534017 973 ntBASIC2.71□□□□□ -1.98
CCDC3Q9BQI4 AHI1-217ENST00000534469 680 ntTSL 3 BASIC2.71□□□□□ -1.98
CCDC3Q9BQI4 ZNF519P2-201ENST00000557032 169 ntBASIC2.71□□□□□ -1.98
CCDC3Q9BQI4 AC009269.4-201ENST00000557828 440 ntTSL 3 BASIC2.71□□□□□ -1.98
CCDC3Q9BQI4 AC020661.3-201ENST00000558101 414 ntTSL 3 BASIC2.71□□□□□ -1.98
CCDC3Q9BQI4 AC068135.2-201ENST00000569293 1028 ntBASIC2.71□□□□□ -1.98
CCDC3Q9BQI4 MIR4435-1-201ENST00000582552 80 ntBASIC2.71□□□□□ -1.98
CCDC3Q9BQI4 AC016229.1-201ENST00000589242 487 ntTSL 5 BASIC2.71□□□□□ -1.98
CCDC3Q9BQI4 AC002115.1-201ENST00000589603 568 ntTSL 4 BASIC2.71□□□□□ -1.98
CCDC3Q9BQI4 AC078899.3-201ENST00000599065 212 ntBASIC2.71□□□□□ -1.98
CCDC3Q9BQI4 AC007938.3-201ENST00000604965 623 ntBASIC2.71□□□□□ -1.98
CCDC3Q9BQI4 AC084782.3-201ENST00000612282 578 ntBASIC2.71□□□□□ -1.98
CCDC3Q9BQI4 C8orf59-208ENST00000612809 475 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.98
CCDC3Q9BQI4 AL161629.2-201ENST00000615347 275 ntBASIC2.71□□□□□ -1.98
CCDC3Q9BQI4 AL158209.2-201ENST00000619266 216 ntBASIC2.71□□□□□ -1.98
CCDC3Q9BQI4 U6.114-201ENST00000636407 96 ntBASIC2.71□□□□□ -1.98
CCDC3Q9BQI4 Z99571.1-201ENST00000636677 394 ntBASIC2.71□□□□□ -1.98
CCDC3Q9BQI4 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC2.71□□□□□ -1.98
CCDC3Q9BQI4 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.98
CCDC3Q9BQI4 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC2.71□□□□□ -1.98
CCDC3Q9BQI4 AC093831.2-201ENST00000624393 3427 ntBASIC2.71□□□□□ -1.98
CCDC3Q9BQI4 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC2.71□□□□□ -1.98
CCDC3Q9BQI4 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC2.7□□□□□ -1.98
CCDC3Q9BQI4 MTND5P19-201ENST00000424872 1794 ntBASIC2.7□□□□□ -1.98
CCDC3Q9BQI4 NACAP2-201ENST00000318548 624 ntBASIC2.7□□□□□ -1.98
CCDC3Q9BQI4 RNU1-35P-201ENST00000362782 153 ntBASIC2.7□□□□□ -1.98
CCDC3Q9BQI4 RNU6-884P-201ENST00000363889 107 ntBASIC2.7□□□□□ -1.98
CCDC3Q9BQI4 RNU1-112P-201ENST00000364401 164 ntBASIC2.7□□□□□ -1.98
CCDC3Q9BQI4 RNU6-395P-201ENST00000365662 106 ntBASIC2.7□□□□□ -1.98
CCDC3Q9BQI4 AKAP14-203ENST00000371425 793 ntAPPRIS ALT2 TSL 5 BASIC2.7□□□□□ -1.98
CCDC3Q9BQI4 MIR9-1-201ENST00000385198 89 ntBASIC2.7□□□□□ -1.98
CCDC3Q9BQI4 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
CCDC3Q9BQI4 RNU2-29P-201ENST00000410423 189 ntBASIC2.7□□□□□ -1.98
CCDC3Q9BQI4 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC2.7□□□□□ -1.98
CCDC3Q9BQI4 AC093157.2-201ENST00000414686 671 ntTSL 5 BASIC2.7□□□□□ -1.98
CCDC3Q9BQI4 TTTY3-201ENST00000417334 344 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
CCDC3Q9BQI4 RPL7P10-201ENST00000417407 739 ntBASIC2.7□□□□□ -1.98
CCDC3Q9BQI4 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC2.7□□□□□ -1.98
CCDC3Q9BQI4 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
CCDC3Q9BQI4 HMGN2P30-201ENST00000423237 256 ntBASIC2.7□□□□□ -1.98
CCDC3Q9BQI4 SKA2P1-201ENST00000425592 390 ntBASIC2.7□□□□□ -1.98
CCDC3Q9BQI4 MYL8P-204ENST00000431574 518 ntBASIC2.7□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 86.5 ms