Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 UQCRHP4-201ENST00000471686 272 ntBASIC4.04□□□□□ -1.76
PTCHD1Q96NR3 AC105137.1-201ENST00000484355 562 ntBASIC4.04□□□□□ -1.76
PTCHD1Q96NR3 AC091167.1-201ENST00000492017 396 ntBASIC4.04□□□□□ -1.76
PTCHD1Q96NR3 AC078817.1-201ENST00000492623 435 ntBASIC4.04□□□□□ -1.76
PTCHD1Q96NR3 RNU6-377P-201ENST00000515965 102 ntBASIC4.04□□□□□ -1.76
PTCHD1Q96NR3 AC034114.1-201ENST00000520293 285 ntBASIC4.04□□□□□ -1.76
PTCHD1Q96NR3 IGLV3-26-201ENST00000520756 302 ntBASIC4.04□□□□□ -1.76
PTCHD1Q96NR3 AC090281.1-201ENST00000523019 276 ntBASIC4.04□□□□□ -1.76
PTCHD1Q96NR3 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC4.04□□□□□ -1.76
PTCHD1Q96NR3 AC005476.1-201ENST00000554427 397 ntBASIC4.04□□□□□ -1.76
PTCHD1Q96NR3 TRAV28-201ENST00000557548 323 ntBASIC4.04□□□□□ -1.76
PTCHD1Q96NR3 AC018904.1-201ENST00000560594 542 ntTSL 3 BASIC4.04□□□□□ -1.76
PTCHD1Q96NR3 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC4.04□□□□□ -1.76
PTCHD1Q96NR3 LINC02079-201ENST00000582518 294 ntTSL 2 BASIC4.04□□□□□ -1.76
PTCHD1Q96NR3 AC053481.4-201ENST00000583164 216 ntBASIC4.04□□□□□ -1.76
PTCHD1Q96NR3 AC005046.1-201ENST00000608515 625 ntBASIC4.04□□□□□ -1.76
PTCHD1Q96NR3 AC015813.4-201ENST00000610469 179 ntBASIC4.04□□□□□ -1.76
PTCHD1Q96NR3 AL731566.2-201ENST00000618971 317 ntBASIC4.04□□□□□ -1.76
PTCHD1Q96NR3 LINC01002-227ENST00000633363 541 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
PTCHD1Q96NR3 PSMD5-AS1-215ENST00000640622 205 ntBASIC4.04□□□□□ -1.76
PTCHD1Q96NR3 PLCB1-233ENST00000637919 5074 ntTSL 5 BASIC4.04□□□□□ -1.76
PTCHD1Q96NR3 RRAS2-202ENST00000414023 1884 ntTSL 2 BASIC4.04□□□□□ -1.76
PTCHD1Q96NR3 ZPLD1-202ENST00000466937 1531 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
PTCHD1Q96NR3 MS4A1-201ENST00000345732 3331 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
PTCHD1Q96NR3 F8-202ENST00000360256 9059 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
PTCHD1Q96NR3 PRKACB-208ENST00000394839 4200 ntTSL 2 BASIC4.03□□□□□ -1.76
PTCHD1Q96NR3 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC4.03□□□□□ -1.76
PTCHD1Q96NR3 POSTN-201ENST00000379742 3071 ntAPPRIS ALT2 TSL 1 (best) BASIC4.03□□□□□ -1.76
PTCHD1Q96NR3 CENPF-201ENST00000366955 10307 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
PTCHD1Q96NR3 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC4.03□□□□□ -1.76
PTCHD1Q96NR3 VEZT-201ENST00000261219 3435 ntTSL 5 BASIC4.03□□□□□ -1.76
PTCHD1Q96NR3 CCDC91-201ENST00000381259 2334 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
PTCHD1Q96NR3 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
PTCHD1Q96NR3 AC008568.2-201ENST00000623862 2313 ntBASIC4.03□□□□□ -1.76
PTCHD1Q96NR3 AC068254.2-201ENST00000623938 3577 ntBASIC4.03□□□□□ -1.76
PTCHD1Q96NR3 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC4.03□□□□□ -1.76
PTCHD1Q96NR3 Y_RNA.14-201ENST00000362415 103 ntBASIC4.03□□□□□ -1.76
PTCHD1Q96NR3 AKAP14-204ENST00000371431 977 ntAPPRIS P3 TSL 1 (best) BASIC4.03□□□□□ -1.76
PTCHD1Q96NR3 AL157831.1-201ENST00000426134 473 ntBASIC4.03□□□□□ -1.76
PTCHD1Q96NR3 GSTA9P-202ENST00000448991 521 ntTSL 3 BASIC4.03□□□□□ -1.76
PTCHD1Q96NR3 AC079354.2-201ENST00000453523 154 ntBASIC4.03□□□□□ -1.76
PTCHD1Q96NR3 RPL23AP81-201ENST00000455252 467 ntBASIC4.03□□□□□ -1.76
PTCHD1Q96NR3 SNORA31.9-201ENST00000516429 84 ntBASIC4.03□□□□□ -1.76
PTCHD1Q96NR3 RNA5SP49-201ENST00000516450 115 ntBASIC4.03□□□□□ -1.76
PTCHD1Q96NR3 RNU6-1073P-201ENST00000517182 106 ntBASIC4.03□□□□□ -1.76
PTCHD1Q96NR3 AL590705.4-201ENST00000532209 134 ntBASIC4.03□□□□□ -1.76
PTCHD1Q96NR3 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC4.03□□□□□ -1.76
PTCHD1Q96NR3 AL109918.3-201ENST00000603072 338 ntBASIC4.03□□□□□ -1.76
PTCHD1Q96NR3 AC006557.5-201ENST00000603126 811 ntBASIC4.03□□□□□ -1.76
PTCHD1Q96NR3 AC096772.1-201ENST00000609146 564 ntBASIC4.03□□□□□ -1.76
PTCHD1Q96NR3 AC090617.7-201ENST00000623952 126 ntBASIC4.03□□□□□ -1.76
PTCHD1Q96NR3 MIR3653-201ENST00000625572 110 ntBASIC4.03□□□□□ -1.76
PTCHD1Q96NR3 CCT7-217ENST00000626868 249 ntTSL 5 BASIC4.03□□□□□ -1.76
PTCHD1Q96NR3 NEDD4-201ENST00000338963 7019 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
PTCHD1Q96NR3 PTPN22-201ENST00000359785 3654 ntAPPRIS P2 TSL 1 (best) BASIC4.03□□□□□ -1.76
PTCHD1Q96NR3 ETV1-203ENST00000403527 3363 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
PTCHD1Q96NR3 PCDH15-234ENST00000622048 6820 ntTSL 5 BASIC4.02□□□□□ -1.77
PTCHD1Q96NR3 SMG1P1-206ENST00000431681 2913 ntTSL 2 BASIC4.02□□□□□ -1.77
PTCHD1Q96NR3 FGD4-213ENST00000546442 3503 ntTSL 5 BASIC4.02□□□□□ -1.77
PTCHD1Q96NR3 UBE2D3-233ENST00000618836 3472 ntAPPRIS ALT1 TSL 5 BASIC4.02□□□□□ -1.77
PTCHD1Q96NR3 FAM49B-212ENST00000519110 1902 ntAPPRIS P1 TSL 5 BASIC4.02□□□□□ -1.77
PTCHD1Q96NR3 AP000560.1-201ENST00000624150 1937 ntBASIC4.02□□□□□ -1.77
PTCHD1Q96NR3 KCNJ13-201ENST00000233826 2950 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
PTCHD1Q96NR3 MIR383-201ENST00000362257 73 ntBASIC4.02□□□□□ -1.77
PTCHD1Q96NR3 RNU1-108P-201ENST00000362556 161 ntBASIC4.02□□□□□ -1.77
PTCHD1Q96NR3 RNU1-14P-201ENST00000362759 152 ntBASIC4.02□□□□□ -1.77
PTCHD1Q96NR3 Y_RNA.60-201ENST00000362831 98 ntBASIC4.02□□□□□ -1.77
PTCHD1Q96NR3 RNU5E-7P-201ENST00000365290 117 ntBASIC4.02□□□□□ -1.77
PTCHD1Q96NR3 RNU6-708P-201ENST00000384217 107 ntBASIC4.02□□□□□ -1.77
PTCHD1Q96NR3 RNU6-611P-201ENST00000384276 104 ntBASIC4.02□□□□□ -1.77
PTCHD1Q96NR3 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC4.02□□□□□ -1.77
PTCHD1Q96NR3 SNORD66.1-201ENST00000391230 76 ntBASIC4.02□□□□□ -1.77
PTCHD1Q96NR3 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC4.02□□□□□ -1.77
PTCHD1Q96NR3 GAS5-208ENST00000425771 242 ntTSL 3 BASIC4.02□□□□□ -1.77
PTCHD1Q96NR3 AC098614.2-201ENST00000426040 255 ntBASIC4.02□□□□□ -1.77
PTCHD1Q96NR3 FTH1P6-201ENST00000430768 320 ntBASIC4.02□□□□□ -1.77
PTCHD1Q96NR3 AC006037.1-201ENST00000437967 287 ntTSL 5 BASIC4.02□□□□□ -1.77
PTCHD1Q96NR3 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC4.02□□□□□ -1.77
PTCHD1Q96NR3 RPEP5-201ENST00000441137 268 ntBASIC4.02□□□□□ -1.77
PTCHD1Q96NR3 AC009237.8-201ENST00000445492 379 ntBASIC4.02□□□□□ -1.77
PTCHD1Q96NR3 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
PTCHD1Q96NR3 SNRPGP5-201ENST00000456003 220 ntBASIC4.02□□□□□ -1.77
PTCHD1Q96NR3 RN7SKP210-201ENST00000459176 261 ntBASIC4.02□□□□□ -1.77
PTCHD1Q96NR3 RPS29P27-201ENST00000463711 170 ntBASIC4.02□□□□□ -1.77
PTCHD1Q96NR3 RPL39P38-201ENST00000467018 153 ntBASIC4.02□□□□□ -1.77
PTCHD1Q96NR3 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC4.02□□□□□ -1.77
PTCHD1Q96NR3 RN7SKP122-201ENST00000515923 296 ntBASIC4.02□□□□□ -1.77
PTCHD1Q96NR3 RNA5SP519-201ENST00000516480 119 ntBASIC4.02□□□□□ -1.77
PTCHD1Q96NR3 RNA5SP73-201ENST00000516744 108 ntBASIC4.02□□□□□ -1.77
PTCHD1Q96NR3 AP003733.2-201ENST00000529409 171 ntBASIC4.02□□□□□ -1.77
PTCHD1Q96NR3 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC4.02□□□□□ -1.77
PTCHD1Q96NR3 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC4.02□□□□□ -1.77
PTCHD1Q96NR3 PARP1P2-201ENST00000556806 195 ntBASIC4.02□□□□□ -1.77
PTCHD1Q96NR3 AC006077.1-201ENST00000604746 343 ntBASIC4.02□□□□□ -1.77
PTCHD1Q96NR3 MIR6716-201ENST00000613413 80 ntBASIC4.02□□□□□ -1.77
PTCHD1Q96NR3 AC141273.2-201ENST00000618989 130 ntBASIC4.02□□□□□ -1.77
PTCHD1Q96NR3 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC4.02□□□□□ -1.77
PTCHD1Q96NR3 AC244196.2-201ENST00000621184 411 ntAPPRIS P1 BASIC4.02□□□□□ -1.77
PTCHD1Q96NR3 AC099506.2-201ENST00000623074 221 ntBASIC4.02□□□□□ -1.77
PTCHD1Q96NR3 ERICH3-AS1-202ENST00000612390 4874 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 122.9 ms